Wall clock time and date at job start Tue Mar 31 2020 13:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20823 * 120.00422 * 2 1 4 4 O 1.34235 * 119.99929 * 180.02562 * 2 1 3 5 5 C 1.45193 * 117.00080 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.47385 * 180.02562 * 5 4 2 7 7 H 1.09006 * 109.46525 * 55.00122 * 6 5 4 8 8 N 1.46900 * 109.47227 * 295.00460 * 6 5 4 9 9 C 1.50698 * 109.47314 * 175.00321 * 6 5 4 10 10 O 1.21281 * 119.99664 * 99.99920 * 9 6 5 11 11 N 1.34776 * 119.99986 * 279.99973 * 9 6 5 12 12 C 1.46494 * 119.99880 * 0.02562 * 11 9 6 13 13 C 1.50702 * 109.47290 * 269.99539 * 12 11 9 14 14 H 1.08007 * 119.99686 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00227 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99840 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 120.00250 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47120 * 89.99655 * 17 15 13 19 19 H 1.48496 * 109.47645 * 210.00124 * 17 15 13 20 20 H 1.48503 * 109.47000 * 330.00343 * 17 15 13 21 21 C 1.46493 * 119.99958 * 179.97438 * 11 9 6 22 22 C 1.50706 * 109.47190 * 90.00107 * 21 11 9 23 23 C 1.38675 * 120.41529 * 89.99861 * 22 21 11 24 24 C 1.38631 * 118.41792 * 179.97438 * 23 22 21 25 25 C 1.38221 * 119.16077 * 0.25627 * 24 23 22 26 26 N 1.31860 * 120.76509 * 359.49797 * 25 24 23 27 27 C 1.31882 * 121.72556 * 0.49011 * 26 25 24 28 28 H 1.09009 * 109.46711 * 239.99895 * 1 2 3 29 29 H 1.08997 * 109.47106 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47340 * 119.99702 * 1 2 3 31 31 H 1.09004 * 109.46677 * 60.00503 * 5 4 2 32 32 H 1.08995 * 109.47560 * 300.00172 * 5 4 2 33 33 H 1.00898 * 111.00059 * 299.99807 * 8 6 5 34 34 H 1.00906 * 110.99808 * 63.94860 * 8 6 5 35 35 H 1.08995 * 109.47754 * 29.99925 * 12 11 9 36 36 H 1.09001 * 109.47307 * 149.99644 * 12 11 9 37 37 H 0.97001 * 120.00342 * 179.97438 * 16 15 13 38 38 H 1.09008 * 109.47517 * 330.00193 * 21 11 9 39 39 H 1.08998 * 109.47567 * 210.00042 * 21 11 9 40 40 H 1.07998 * 120.79161 * 359.96013 * 23 22 21 41 41 H 1.08002 * 120.41548 * 179.97438 * 24 23 22 42 42 H 1.08002 * 119.62066 * 179.74470 * 25 24 23 43 43 H 1.07993 * 119.62126 * 179.75488 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1112 1.0463 0.0000 4 8 2.1782 -1.1625 -0.0005 5 6 3.6281 -1.0866 -0.0011 6 6 4.2129 -2.5004 -0.0023 7 1 3.8067 -3.0608 -0.8444 8 7 3.8597 -3.1775 1.2526 9 6 5.7128 -2.4235 -0.1266 10 8 6.4097 -2.5409 0.8590 11 7 6.2797 -2.2244 -1.3330 12 6 5.4378 -2.0820 -2.5233 13 6 5.2035 -3.4379 -3.1380 14 1 5.6380 -4.3178 -2.6867 15 6 4.4345 -3.5553 -4.2764 16 7 4.2297 -4.7386 -4.8124 17 14 3.6837 -2.0336 -5.0573 18 1 4.6297 -1.4706 -6.0541 19 1 2.4128 -2.3995 -5.7326 20 1 3.4117 -1.0206 -4.0060 21 6 7.7377 -2.1491 -1.4537 22 6 8.2932 -3.5280 -1.7010 23 6 8.4455 -4.0018 -2.9954 24 6 8.9610 -5.2761 -3.1751 25 6 9.2985 -6.0287 -2.0660 26 7 9.1443 -5.5438 -0.8495 27 6 8.6575 -4.3360 -0.6409 28 1 -0.3633 -0.5139 0.8901 29 1 -0.3633 1.0276 0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 3.9643 -0.5547 0.8890 32 1 3.9638 -0.5542 -0.8910 33 1 4.2251 -2.6770 2.0489 34 1 2.8609 -3.2991 1.3291 35 1 4.4818 -1.6407 -2.2417 36 1 5.9368 -1.4367 -3.2463 37 1 3.6884 -4.8213 -5.6131 38 1 8.1585 -1.7479 -0.5317 39 1 8.0002 -1.4970 -2.2867 40 1 8.1690 -3.3927 -3.8432 41 1 9.0929 -5.6774 -4.1691 42 1 9.6968 -7.0240 -2.1973 43 1 8.5419 -3.9744 0.3701 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157720095.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:40 Heat of formation + Delta-G solvation = -79.057953 kcal Electronic energy + Delta-G solvation = -27980.477525 eV Core-core repulsion = 24026.133200 eV Total energy + Delta-G solvation = -3954.344325 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.55746 -39.93805 -39.09497 -36.75025 -35.52960 -34.29824 -32.81924 -32.03585 -31.16857 -30.56985 -28.33990 -28.05337 -26.10931 -23.66123 -23.02693 -22.39222 -21.49428 -21.14842 -18.63504 -17.68088 -17.28077 -17.08419 -16.55534 -16.49297 -16.35702 -15.80216 -15.62218 -15.08288 -14.67461 -14.29784 -14.14757 -14.00470 -13.46571 -13.23627 -13.13128 -13.00825 -12.76138 -12.58392 -12.49051 -12.44494 -12.32394 -12.14775 -11.91261 -11.51324 -11.15436 -11.09584 -10.76795 -10.65616 -10.64231 -10.36122 -9.76809 -9.45515 -9.15454 -8.98219 -8.81093 -8.59180 -8.45797 -7.94917 -6.29045 -4.31470 1.58089 1.86886 2.12054 2.49345 3.07893 3.12954 3.15783 3.19003 3.64418 4.16993 4.39088 4.58622 4.77977 4.89162 4.92604 4.96859 5.00040 5.07749 5.13283 5.15758 5.30757 5.35349 5.41294 5.47541 5.57890 5.60053 5.80928 5.93768 6.00736 6.14148 6.23514 6.29467 6.39186 6.47040 6.67939 6.82436 7.07244 7.22897 7.24656 7.31973 7.64764 7.67238 7.90948 8.28171 8.46703 8.66141 8.81388 9.28824 10.82810 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011779 B = 0.005082 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.485668 B = 5508.048957 C = 7068.758483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.458 3.542 3 O -0.516 6.516 4 O -0.352 6.352 5 C 0.038 3.962 6 C 0.078 3.922 7 H 0.135 0.865 8 N -0.819 5.819 9 C 0.535 3.465 10 O -0.546 6.546 11 N -0.585 5.585 12 C 0.201 3.799 13 C -0.539 4.539 14 H 0.083 0.917 15 C 0.081 3.919 16 N -0.883 5.883 17 Si 0.864 3.136 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.267 1.267 21 C 0.166 3.834 22 C -0.148 4.148 23 C -0.029 4.029 24 C -0.176 4.176 25 C 0.091 3.909 26 N -0.496 5.496 27 C 0.115 3.885 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.344 0.656 34 H 0.349 0.651 35 H 0.034 0.966 36 H 0.032 0.968 37 H 0.267 0.733 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.135 0.865 41 H 0.129 0.871 42 H 0.147 0.853 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.582 6.647 5.191 8.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.301 3.699 3 O -0.405 6.405 4 O -0.268 6.268 5 C -0.039 4.039 6 C -0.037 4.037 7 H 0.152 0.848 8 N -0.350 5.350 9 C 0.322 3.678 10 O -0.425 6.425 11 N -0.316 5.316 12 C 0.080 3.920 13 C -0.577 4.577 14 H 0.101 0.899 15 C -0.123 4.123 16 N -0.520 5.520 17 Si 0.691 3.309 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.191 1.191 21 C 0.042 3.958 22 C -0.151 4.151 23 C -0.056 4.056 24 C -0.196 4.196 25 C -0.066 4.066 26 N -0.205 5.205 27 C -0.042 4.042 28 H 0.118 0.882 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.158 0.842 34 H 0.163 0.837 35 H 0.051 0.949 36 H 0.050 0.950 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.153 0.847 41 H 0.147 0.853 42 H 0.164 0.836 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.435 5.656 5.977 8.241 hybrid contribution -1.379 2.041 -1.467 2.867 sum -1.814 7.697 4.511 9.104 Atomic orbital electron populations 1.21645 0.87045 1.05776 1.05918 1.23870 0.92194 0.81636 0.72162 1.90690 1.71034 1.33184 1.45555 1.86459 1.21978 1.34752 1.83635 1.23985 0.76508 0.99837 1.03520 1.21504 0.93200 0.91923 0.97102 0.84751 1.58450 1.18701 1.55136 1.02726 1.19819 0.89047 0.76035 0.82941 1.90600 1.63887 1.50602 1.37369 1.47954 1.05931 1.69622 1.08057 1.20009 0.90157 0.98686 0.83128 1.21330 1.32937 0.92528 1.10878 0.89899 1.24843 0.95547 0.95495 0.96464 1.69886 1.38435 1.22514 1.21172 0.87045 0.79690 0.83844 0.80327 1.19890 1.20781 1.19150 1.20153 0.80443 0.92628 1.02562 1.21122 1.00705 0.98932 0.94317 1.21461 0.91883 0.95299 0.96951 1.22041 1.01613 0.95666 1.00236 1.22627 0.96694 0.99263 0.88025 1.67661 1.14112 1.13908 1.24802 1.22688 0.93197 0.89112 0.99200 0.88179 0.88195 0.87969 0.90947 0.89907 0.84230 0.83661 0.94852 0.95021 0.92330 0.89587 0.89823 0.84747 0.85339 0.83588 0.82951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 10.43 36.01 0.38 -0.81 16 2 C 0.46 6.15 8.07 36.01 0.29 6.44 16 3 O -0.52 -8.61 16.83 -18.75 -0.32 -8.93 16 4 O -0.35 -5.10 9.89 -39.27 -0.39 -5.49 16 5 C 0.04 0.60 4.71 37.16 0.17 0.77 16 6 C 0.08 1.36 2.61 -68.86 -0.18 1.18 16 7 H 0.13 2.68 6.77 -51.93 -0.35 2.33 16 8 N -0.82 -12.86 8.98 -5.65 -0.05 -12.91 16 9 C 0.54 10.29 6.92 -10.99 -0.08 10.22 16 10 O -0.55 -11.16 15.39 5.56 0.09 -11.08 16 11 N -0.59 -11.06 2.44 -176.44 -0.43 -11.49 16 12 C 0.20 4.11 3.84 -5.20 -0.02 4.09 16 13 C -0.54 -13.17 8.87 -34.44 -0.31 -13.47 16 14 H 0.08 2.35 7.83 -52.48 -0.41 1.94 16 15 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 16 N -0.88 -24.48 13.96 55.43 0.77 -23.70 16 17 Si 0.86 18.94 27.47 -169.99 -4.67 14.27 16 18 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.27 -5.59 6.54 56.52 0.37 -5.22 16 21 C 0.17 2.77 5.60 -5.19 -0.03 2.74 16 22 C -0.15 -2.65 5.48 -104.48 -0.57 -3.22 16 23 C -0.03 -0.52 9.09 -39.28 -0.36 -0.88 16 24 C -0.18 -2.94 10.11 -39.44 -0.40 -3.34 16 25 C 0.09 1.53 11.18 -17.55 -0.20 1.33 16 26 N -0.50 -9.37 10.36 -13.25 -0.14 -9.51 16 27 C 0.12 2.16 10.86 -17.55 -0.19 1.97 16 28 H 0.10 0.59 8.14 -51.92 -0.42 0.17 16 29 H 0.10 0.70 8.12 -51.93 -0.42 0.28 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.07 1.09 8.13 -51.93 -0.42 0.67 16 32 H 0.08 1.40 6.42 -51.93 -0.33 1.07 16 33 H 0.34 5.07 8.58 -39.29 -0.34 4.73 16 34 H 0.35 4.70 8.75 -39.29 -0.34 4.36 16 35 H 0.03 0.68 3.89 -51.93 -0.20 0.48 16 36 H 0.03 0.62 7.32 -51.93 -0.38 0.24 16 37 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.09 1.35 7.37 -51.92 -0.38 0.97 16 39 H 0.08 1.21 7.85 -51.93 -0.41 0.80 16 40 H 0.13 2.33 8.06 -52.49 -0.42 1.91 16 41 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 42 H 0.15 1.99 8.06 -52.49 -0.42 1.57 16 43 H 0.15 2.84 7.61 -52.49 -0.40 2.44 16 LS Contribution 366.75 15.07 5.53 5.53 Total: -1.00 -31.75 366.75 -6.86 -38.61 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: -5.67 Total: 15.72 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: -1.58 Total: 8.98 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: 0.16 Total: -57.61 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.62 Total: -25.49 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.67 Total: 14.27 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.75 -6.86 -38.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157720095.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.445 kcal (2) G-P(sol) polarization free energy of solvation -31.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds