Wall clock time and date at job start Tue Mar 31 2020 13:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20823 * 120.00422 * 2 1 4 4 O 1.34235 * 119.99929 * 180.02562 * 2 1 3 5 5 C 1.45193 * 117.00080 * 179.97438 * 4 2 1 6 6 C 1.53003 * 109.47385 * 180.02562 * 5 4 2 7 7 H 1.09006 * 109.46525 * 55.00122 * 6 5 4 8 8 N 1.46900 * 109.47227 * 295.00460 * 6 5 4 9 9 C 1.50698 * 109.47314 * 175.00321 * 6 5 4 10 10 O 1.21281 * 119.99664 * 99.99920 * 9 6 5 11 11 N 1.34776 * 119.99986 * 279.99973 * 9 6 5 12 12 C 1.46494 * 119.99880 * 0.02562 * 11 9 6 13 13 C 1.50702 * 109.47290 * 269.99539 * 12 11 9 14 14 H 1.08007 * 119.99686 * 0.02562 * 13 12 11 15 15 C 1.37873 * 120.00227 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99840 * 180.02562 * 15 13 12 17 17 Si 1.86794 * 120.00250 * 0.02562 * 15 13 12 18 18 H 1.48506 * 109.47120 * 89.99655 * 17 15 13 19 19 H 1.48496 * 109.47645 * 210.00124 * 17 15 13 20 20 H 1.48503 * 109.47000 * 330.00343 * 17 15 13 21 21 C 1.46493 * 119.99958 * 179.97438 * 11 9 6 22 22 C 1.50706 * 109.47190 * 90.00107 * 21 11 9 23 23 C 1.38675 * 120.41529 * 89.99861 * 22 21 11 24 24 C 1.38631 * 118.41792 * 179.97438 * 23 22 21 25 25 C 1.38221 * 119.16077 * 0.25627 * 24 23 22 26 26 N 1.31860 * 120.76509 * 359.49797 * 25 24 23 27 27 C 1.31882 * 121.72556 * 0.49011 * 26 25 24 28 28 H 1.09009 * 109.46711 * 239.99895 * 1 2 3 29 29 H 1.08997 * 109.47106 * 359.97438 * 1 2 3 30 30 H 1.08995 * 109.47340 * 119.99702 * 1 2 3 31 31 H 1.09004 * 109.46677 * 60.00503 * 5 4 2 32 32 H 1.08995 * 109.47560 * 300.00172 * 5 4 2 33 33 H 1.00898 * 111.00059 * 299.99807 * 8 6 5 34 34 H 1.00906 * 110.99808 * 63.94860 * 8 6 5 35 35 H 1.08995 * 109.47754 * 29.99925 * 12 11 9 36 36 H 1.09001 * 109.47307 * 149.99644 * 12 11 9 37 37 H 0.97001 * 120.00342 * 179.97438 * 16 15 13 38 38 H 1.09008 * 109.47517 * 330.00193 * 21 11 9 39 39 H 1.08998 * 109.47567 * 210.00042 * 21 11 9 40 40 H 1.07998 * 120.79161 * 359.96013 * 23 22 21 41 41 H 1.08002 * 120.41548 * 179.97438 * 24 23 22 42 42 H 1.08002 * 119.62066 * 179.74470 * 25 24 23 43 43 H 1.07993 * 119.62126 * 179.75488 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1112 1.0463 0.0000 4 8 2.1782 -1.1625 -0.0005 5 6 3.6281 -1.0866 -0.0011 6 6 4.2129 -2.5004 -0.0023 7 1 3.8067 -3.0608 -0.8444 8 7 3.8597 -3.1775 1.2526 9 6 5.7128 -2.4235 -0.1266 10 8 6.4097 -2.5409 0.8590 11 7 6.2797 -2.2244 -1.3330 12 6 5.4378 -2.0820 -2.5233 13 6 5.2035 -3.4379 -3.1380 14 1 5.6380 -4.3178 -2.6867 15 6 4.4345 -3.5553 -4.2764 16 7 4.2297 -4.7386 -4.8124 17 14 3.6837 -2.0336 -5.0573 18 1 4.6297 -1.4706 -6.0541 19 1 2.4128 -2.3995 -5.7326 20 1 3.4117 -1.0206 -4.0060 21 6 7.7377 -2.1491 -1.4537 22 6 8.2932 -3.5280 -1.7010 23 6 8.4455 -4.0018 -2.9954 24 6 8.9610 -5.2761 -3.1751 25 6 9.2985 -6.0287 -2.0660 26 7 9.1443 -5.5438 -0.8495 27 6 8.6575 -4.3360 -0.6409 28 1 -0.3633 -0.5139 0.8901 29 1 -0.3633 1.0276 0.0005 30 1 -0.3634 -0.5138 -0.8900 31 1 3.9643 -0.5547 0.8890 32 1 3.9638 -0.5542 -0.8910 33 1 4.2251 -2.6770 2.0489 34 1 2.8609 -3.2991 1.3291 35 1 4.4818 -1.6407 -2.2417 36 1 5.9368 -1.4367 -3.2463 37 1 3.6884 -4.8213 -5.6131 38 1 8.1585 -1.7479 -0.5317 39 1 8.0002 -1.4970 -2.2867 40 1 8.1690 -3.3927 -3.8432 41 1 9.0929 -5.6774 -4.1691 42 1 9.6968 -7.0240 -2.1973 43 1 8.5419 -3.9744 0.3701 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157720095.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:40 Heat of formation + Delta-G solvation = -101.329364 kcal Electronic energy + Delta-G solvation = -27981.443286 eV Core-core repulsion = 24026.133200 eV Total energy + Delta-G solvation = -3955.310086 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.77789 -41.29599 -40.52072 -37.95186 -37.08396 -35.64844 -34.63881 -33.52534 -32.57945 -31.38260 -29.98492 -29.41933 -27.47479 -25.15084 -24.44739 -24.03454 -22.81697 -22.29008 -20.09140 -19.10388 -18.91531 -18.44936 -17.94470 -17.70868 -17.53253 -17.23742 -17.04023 -16.54825 -16.22991 -15.68257 -15.47979 -15.40018 -14.75773 -14.68609 -14.59152 -14.18318 -14.06770 -13.93386 -13.90517 -13.74800 -13.46053 -13.43819 -13.17745 -12.94182 -12.74371 -12.52806 -12.39892 -12.07026 -11.86145 -11.74472 -11.66926 -10.99045 -10.77418 -10.56483 -10.40613 -9.94498 -9.79848 -9.51568 -8.25300 -6.31166 0.19804 0.45580 1.09203 1.29610 1.36677 1.40397 1.46261 1.72963 2.24425 2.33296 2.98904 3.07661 3.45404 3.47951 3.58664 3.62546 3.76399 3.84511 3.94943 3.99344 4.16141 4.17902 4.20676 4.47436 4.49629 4.54925 4.57597 4.61310 4.65504 4.78930 4.81604 4.90822 4.91809 5.29542 5.36904 5.41476 5.45067 5.56819 5.86199 5.97620 6.19214 6.49729 6.50838 6.59837 6.76299 7.06688 7.14078 7.33452 8.90133 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011779 B = 0.005082 C = 0.003960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.485668 B = 5508.048957 C = 7068.758483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.452 3.548 3 O -0.553 6.553 4 O -0.354 6.354 5 C 0.047 3.953 6 C 0.086 3.914 7 H 0.109 0.891 8 N -0.824 5.824 9 C 0.528 3.472 10 O -0.561 6.561 11 N -0.586 5.586 12 C 0.208 3.792 13 C -0.523 4.523 14 H 0.035 0.965 15 C 0.030 3.970 16 N -0.934 5.934 17 Si 0.926 3.074 18 H -0.263 1.263 19 H -0.287 1.287 20 H -0.248 1.248 21 C 0.161 3.839 22 C -0.152 4.152 23 C -0.043 4.043 24 C -0.178 4.178 25 C 0.085 3.915 26 N -0.516 5.516 27 C 0.100 3.900 28 H 0.126 0.874 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.351 0.649 34 H 0.362 0.638 35 H 0.041 0.959 36 H 0.052 0.948 37 H 0.266 0.734 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.137 0.863 41 H 0.152 0.848 42 H 0.178 0.822 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.520 8.153 4.967 9.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.298 3.702 3 O -0.444 6.444 4 O -0.270 6.270 5 C -0.030 4.030 6 C -0.029 4.029 7 H 0.126 0.874 8 N -0.357 5.357 9 C 0.315 3.685 10 O -0.440 6.440 11 N -0.316 5.316 12 C 0.086 3.914 13 C -0.561 4.561 14 H 0.054 0.946 15 C -0.170 4.170 16 N -0.573 5.573 17 Si 0.750 3.250 18 H -0.188 1.188 19 H -0.213 1.213 20 H -0.172 1.172 21 C 0.038 3.962 22 C -0.155 4.155 23 C -0.070 4.070 24 C -0.198 4.198 25 C -0.072 4.072 26 N -0.225 5.225 27 C -0.057 4.057 28 H 0.145 0.855 29 H 0.131 0.869 30 H 0.135 0.865 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.165 0.835 34 H 0.178 0.822 35 H 0.059 0.941 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.113 0.887 39 H 0.127 0.873 40 H 0.155 0.845 41 H 0.169 0.831 42 H 0.195 0.805 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -1.374 7.178 5.776 9.315 hybrid contribution -1.060 1.467 -1.340 2.252 sum -2.434 8.645 4.437 10.017 Atomic orbital electron populations 1.21824 0.82647 1.07322 1.07789 1.25016 0.93983 0.80570 0.70599 1.90677 1.72079 1.34211 1.47408 1.86486 1.21023 1.35754 1.83762 1.23716 0.77659 0.98281 1.03306 1.21250 0.92044 0.92732 0.96911 0.87358 1.58412 1.19864 1.55139 1.02325 1.20183 0.89852 0.75587 0.82873 1.90587 1.64451 1.51244 1.37737 1.47966 1.06756 1.69399 1.07484 1.19868 0.91125 0.96582 0.83809 1.21314 1.31672 0.92806 1.10326 0.94619 1.25574 0.96115 0.98199 0.97084 1.70039 1.40129 1.25083 1.22093 0.86045 0.78631 0.80465 0.79855 1.18800 1.21340 1.17210 1.20380 0.79166 0.92498 1.04132 1.21219 1.00635 0.99451 0.94204 1.21641 0.92302 0.96040 0.96971 1.22367 1.00706 0.95290 1.01440 1.23161 0.96135 1.00505 0.87371 1.67653 1.14742 1.14118 1.26033 1.22702 0.94126 0.89595 0.99297 0.85537 0.86890 0.86516 0.90309 0.90917 0.83475 0.82232 0.94088 0.93039 0.92471 0.88705 0.87299 0.84520 0.83069 0.80478 0.83526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 10.43 71.24 0.74 -1.06 16 2 C 0.45 11.26 8.07 71.24 0.57 11.83 16 3 O -0.55 -17.70 16.83 21.97 0.37 -17.33 16 4 O -0.35 -9.71 9.89 -51.46 -0.51 -10.21 16 5 C 0.05 1.44 4.71 71.98 0.34 1.78 16 6 C 0.09 2.98 2.61 44.17 0.12 3.10 16 7 H 0.11 4.36 6.77 -2.38 -0.02 4.34 16 8 N -0.82 -25.48 8.98 -171.79 -1.54 -27.03 16 9 C 0.53 20.22 6.92 87.66 0.61 20.83 16 10 O -0.56 -22.88 15.39 -3.03 -0.05 -22.93 16 11 N -0.59 -21.82 2.44 -830.52 -2.03 -23.85 16 12 C 0.21 8.25 3.84 85.63 0.33 8.58 16 13 C -0.52 -25.68 8.87 25.60 0.23 -25.46 16 14 H 0.04 2.08 7.83 -2.91 -0.02 2.06 16 15 C 0.03 1.52 5.47 84.65 0.46 1.99 16 16 N -0.93 -52.65 13.96 21.45 0.30 -52.35 16 17 Si 0.93 38.09 27.47 68.60 1.88 39.98 16 18 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 19 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16 20 H -0.25 -9.40 6.54 99.48 0.65 -8.74 16 21 C 0.16 5.25 5.60 85.64 0.48 5.73 16 22 C -0.15 -5.46 5.48 -19.77 -0.11 -5.57 16 23 C -0.04 -1.52 9.09 22.47 0.20 -1.31 16 24 C -0.18 -5.85 10.11 22.36 0.23 -5.63 16 25 C 0.09 2.81 11.18 84.68 0.95 3.76 16 26 N -0.52 -19.59 10.36 -195.85 -2.03 -21.61 16 27 C 0.10 3.79 10.86 84.67 0.92 4.71 16 28 H 0.13 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.11 1.21 8.12 -2.39 -0.02 1.19 16 30 H 0.12 1.24 8.14 -2.39 -0.02 1.23 16 31 H 0.08 2.31 8.13 -2.39 -0.02 2.29 16 32 H 0.07 2.37 6.42 -2.39 -0.02 2.36 16 33 H 0.35 10.09 8.58 -89.70 -0.77 9.32 16 34 H 0.36 9.41 8.75 -89.69 -0.78 8.63 16 35 H 0.04 1.61 3.89 -2.39 -0.01 1.60 16 36 H 0.05 1.88 7.32 -2.39 -0.02 1.87 16 37 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 38 H 0.09 2.92 7.37 -2.38 -0.02 2.90 16 39 H 0.11 2.95 7.85 -2.39 -0.02 2.93 16 40 H 0.14 4.68 8.06 -2.91 -0.02 4.66 16 41 H 0.15 4.16 8.06 -2.91 -0.02 4.14 16 42 H 0.18 4.55 8.06 -2.91 -0.02 4.53 16 43 H 0.15 5.62 7.61 -2.91 -0.02 5.59 16 Total: -1.00 -69.74 366.75 1.92 -67.82 By element: Atomic # 1 Polarization: 44.80 SS G_CDS: -0.55 Total: 44.25 kcal Atomic # 6 Polarization: 17.20 SS G_CDS: 6.07 Total: 23.27 kcal Atomic # 7 Polarization: -119.54 SS G_CDS: -5.30 Total: -124.84 kcal Atomic # 8 Polarization: -50.29 SS G_CDS: -0.19 Total: -50.48 kcal Atomic # 14 Polarization: 38.09 SS G_CDS: 1.88 Total: 39.98 kcal Total: -69.74 1.92 -67.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157720095.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.507 kcal (2) G-P(sol) polarization free energy of solvation -69.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds