Wall clock time and date at job start Tue Mar 31 2020 13:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35734 * 116.99438 * 2 1 4 4 C 1.41860 * 126.78373 * 180.02562 * 3 2 1 5 5 C 1.36661 * 103.80774 * 179.70711 * 4 3 2 6 6 C 1.47544 * 126.87427 * 180.28221 * 5 4 3 7 7 O 1.21580 * 120.00299 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99814 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00152 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.47343 * 179.97438 * 9 8 6 11 11 C 1.50699 * 109.47221 * 180.02562 * 10 9 8 12 12 C 1.29453 * 117.70015 * 94.99678 * 11 10 9 13 13 C 1.50317 * 123.65652 * 180.85647 * 12 11 10 14 14 N 1.47015 * 109.16327 * 349.02538 * 13 12 11 15 15 C 1.36932 * 121.37372 * 222.96420 * 14 13 12 16 16 H 1.08002 * 119.99724 * 155.97001 * 15 14 13 17 17 C 1.38814 * 120.00257 * 335.97535 * 15 14 13 18 18 N 1.31625 * 119.99706 * 344.51362 * 17 15 14 19 19 Si 1.86798 * 119.99973 * 164.50994 * 17 15 14 20 20 H 1.48496 * 109.47479 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46624 * 120.00274 * 19 17 15 22 22 H 1.48500 * 109.47189 * 239.99481 * 19 17 15 23 23 C 1.47337 * 117.24807 * 42.94808 * 14 13 12 24 24 C 1.49976 * 117.69058 * 274.73871 * 11 10 9 25 25 O 1.34662 * 106.24636 * 0.25803 * 5 4 3 26 26 N 1.20872 * 111.62965 * 0.02562 * 25 5 4 27 27 H 1.09001 * 109.46505 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46996 * 299.99550 * 1 2 3 29 29 H 1.08996 * 109.47221 * 60.00216 * 1 2 3 30 30 H 1.08002 * 128.09272 * 359.96446 * 4 3 2 31 31 H 0.97000 * 120.00290 * 359.97438 * 8 6 5 32 32 H 1.09007 * 109.47245 * 299.99575 * 9 8 6 33 33 H 1.09000 * 109.47498 * 59.99460 * 9 8 6 34 34 H 1.09001 * 109.46892 * 299.99346 * 10 9 8 35 35 H 1.09000 * 109.47167 * 59.99377 * 10 9 8 36 36 H 1.08004 * 118.17129 * 0.88383 * 12 11 10 37 37 H 1.09003 * 109.52207 * 108.92965 * 13 12 11 38 38 H 1.08994 * 109.52311 * 229.11695 * 13 12 11 39 39 H 0.97006 * 119.99661 * 180.02562 * 18 17 15 40 40 H 1.08997 * 109.78334 * 57.81156 * 23 14 13 41 41 H 1.09005 * 109.77756 * 178.61935 * 23 14 13 42 42 H 1.09001 * 109.31196 * 281.28994 * 24 11 10 43 43 H 1.08997 * 109.31772 * 40.71694 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2095 0.0000 4 6 3.4431 1.4507 -0.0005 5 6 3.5388 2.8139 -0.0071 6 6 4.7783 3.6143 -0.0162 7 8 5.8602 3.0597 -0.0180 8 7 4.7111 4.9604 -0.0214 9 6 5.9416 5.7552 -0.0310 10 6 5.5874 7.2437 -0.0360 11 6 6.8533 8.0613 -0.0465 12 6 7.2986 8.4663 -1.1926 13 6 8.5562 9.2724 -1.3601 14 7 9.0164 9.7286 -0.0404 15 6 9.4690 11.0062 0.1543 16 1 9.4346 11.4469 1.1397 17 6 9.9721 11.7349 -0.9148 18 7 10.2998 11.1221 -2.0327 19 14 10.1837 13.5849 -0.7669 20 1 9.7461 14.0271 0.5814 21 1 11.6130 13.9368 -0.9632 22 1 9.3609 14.2615 -1.8016 23 6 8.9701 8.7544 1.0640 24 6 7.5053 8.3533 1.2722 25 8 2.2756 3.2803 -0.0041 26 7 1.4685 2.3806 0.0037 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 4.2442 0.7263 -0.0004 31 1 3.8479 5.4030 -0.0195 32 1 6.5302 5.5245 0.8570 33 1 6.5212 5.5170 -0.9229 34 1 4.9992 7.4742 -0.9242 35 1 5.0077 7.4822 0.8557 36 1 6.7347 8.2112 -2.0777 37 1 9.3266 8.6540 -1.8207 38 1 8.3538 10.1358 -1.9937 39 1 10.6517 11.6313 -2.7796 40 1 9.5638 7.8772 0.8072 41 1 9.3591 9.2103 1.9745 42 1 6.9719 9.1656 1.7660 43 1 7.4628 7.4636 1.9003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001159885895.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:31 Heat of formation + Delta-G solvation = 34.320629 kcal Electronic energy + Delta-G solvation = -25741.709970 eV Core-core repulsion = 21792.282109 eV Total energy + Delta-G solvation = -3949.427861 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.41788 -39.96823 -39.34573 -37.93756 -35.67290 -33.77770 -33.60439 -32.35613 -31.32200 -29.85943 -28.80916 -28.13423 -25.74980 -24.21895 -23.75566 -22.90591 -22.40322 -21.23682 -20.92402 -19.35590 -18.39918 -17.61380 -17.32063 -16.59276 -16.44130 -16.07759 -15.76169 -15.56897 -15.28357 -15.01607 -14.37127 -14.15730 -14.07947 -13.85252 -13.59186 -13.34162 -12.74384 -12.67090 -12.40004 -12.26930 -12.05796 -11.91290 -11.62224 -11.43705 -11.06201 -10.93128 -10.75704 -10.68121 -10.30850 -10.28236 -10.22679 -9.81819 -9.80942 -9.55684 -9.38233 -8.65611 -7.93857 -6.72008 -5.78250 -3.16865 0.34059 1.64441 2.15603 2.17576 2.63646 2.82967 3.09698 3.38022 3.45669 3.47777 3.62884 4.29542 4.47775 4.50356 4.56715 4.63922 4.74483 4.97023 5.05202 5.07775 5.23250 5.23986 5.40207 5.53393 5.60412 5.73329 5.92530 5.95756 6.09270 6.16330 6.21182 6.38653 6.41488 6.55512 6.78817 6.91075 6.98357 7.23144 7.32644 7.40301 7.56308 7.68974 7.76029 7.88011 8.39852 9.21377 9.84270 10.42711 11.32143 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.044914 B = 0.001834 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.264885 B =15262.785390 C =15366.349459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.281 6.281 3 C 0.205 3.795 4 C -0.154 4.154 5 C -0.056 4.056 6 C 0.602 3.398 7 O -0.505 6.505 8 N -0.710 5.710 9 C 0.122 3.878 10 C -0.093 4.093 11 C -0.144 4.144 12 C -0.144 4.144 13 C 0.195 3.805 14 N -0.596 5.596 15 C -0.244 4.244 16 H 0.069 0.931 17 C -0.002 4.002 18 N -0.909 5.909 19 Si 0.904 3.096 20 H -0.278 1.278 21 H -0.291 1.291 22 H -0.290 1.290 23 C 0.143 3.857 24 C -0.091 4.091 25 O 0.117 5.883 26 N -0.389 5.389 27 H 0.108 0.892 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.191 0.809 31 H 0.407 0.593 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.039 0.961 38 H 0.091 0.909 39 H 0.253 0.747 40 H 0.024 0.976 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.072 -19.016 3.791 27.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.187 6.187 3 C 0.008 3.992 4 C -0.176 4.176 5 C -0.122 4.122 6 C 0.384 3.616 7 O -0.380 6.380 8 N -0.361 5.361 9 C 0.000 4.000 10 C -0.130 4.130 11 C -0.145 4.145 12 C -0.164 4.164 13 C 0.070 3.930 14 N -0.319 5.319 15 C -0.374 4.374 16 H 0.086 0.914 17 C -0.200 4.200 18 N -0.555 5.555 19 Si 0.734 3.266 20 H -0.203 1.203 21 H -0.218 1.218 22 H -0.216 1.216 23 C 0.016 3.984 24 C -0.130 4.130 25 O 0.051 5.949 26 N -0.113 5.113 27 H 0.126 0.874 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.209 0.791 31 H 0.242 0.758 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.056 0.944 38 H 0.109 0.891 39 H 0.063 0.937 40 H 0.042 0.958 41 H 0.074 0.926 42 H 0.081 0.919 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.339 -19.205 3.661 27.500 hybrid contribution -0.056 0.682 -0.115 0.694 sum -19.395 -18.523 3.546 27.052 Atomic orbital electron populations 1.23125 0.76411 1.04420 1.02530 1.86234 1.22887 1.20277 1.89275 1.21910 0.90651 0.85858 1.00827 1.22210 0.94476 0.95003 1.05941 1.24127 0.87044 0.93923 1.07097 1.16460 0.85027 0.82126 0.77971 1.90921 1.26389 1.71201 1.49528 1.46013 1.11588 1.05170 1.73328 1.21632 0.84963 0.89958 1.03483 1.20924 0.97510 0.92080 1.02526 1.20209 0.96673 1.01652 0.95960 1.23141 0.99266 0.97922 0.96039 1.19716 0.88727 0.96390 0.88119 1.44141 1.73823 1.09045 1.04877 1.19230 1.34260 0.88460 0.95435 0.91351 1.24991 0.99020 0.98586 0.97408 1.70031 1.46708 1.33960 1.04774 0.86190 0.77322 0.85610 0.77480 1.20328 1.21774 1.21634 1.20995 0.92367 0.92698 0.92344 1.20798 0.98890 0.99521 0.93828 1.84949 1.11788 1.29689 1.68507 1.74001 1.15773 0.96725 1.24801 0.87370 0.92051 0.92038 0.79138 0.75752 0.90493 0.90516 0.91265 0.91174 0.88997 0.94358 0.89129 0.93693 0.95762 0.92562 0.91881 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.73 101.05 1.08 1.25 16 2 O -0.28 -2.46 10.57 -18.91 -0.20 -2.66 16 3 C 0.20 2.00 8.00 -16.72 -0.13 1.87 16 4 C -0.15 -1.44 10.97 -38.77 -0.43 -1.86 16 5 C -0.06 -0.54 7.29 -36.36 -0.26 -0.80 16 6 C 0.60 6.65 7.82 -12.47 -0.10 6.55 16 7 O -0.51 -7.27 16.91 5.30 0.09 -7.18 16 8 N -0.71 -6.71 5.55 -61.35 -0.34 -7.05 16 9 C 0.12 1.38 5.66 -4.04 -0.02 1.36 16 10 C -0.09 -1.09 5.32 -27.88 -0.15 -1.24 16 11 C -0.14 -2.35 5.11 -100.99 -0.52 -2.86 16 12 C -0.14 -2.68 9.47 -35.78 -0.34 -3.02 16 13 C 0.20 4.62 5.23 -5.10 -0.03 4.59 16 14 N -0.60 -14.85 3.01 -173.56 -0.52 -15.37 16 15 C -0.24 -6.68 9.71 -15.06 -0.15 -6.82 16 16 H 0.07 1.83 7.88 -52.49 -0.41 1.42 16 17 C 0.00 -0.06 5.01 -17.43 -0.09 -0.15 16 18 N -0.91 -26.20 11.08 55.49 0.61 -25.58 16 19 Si 0.90 21.63 29.58 -169.99 -5.03 16.60 16 20 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 C 0.14 2.94 6.59 -3.43 -0.02 2.92 16 24 C -0.09 -1.54 5.95 -28.08 -0.17 -1.71 16 25 O 0.12 1.11 11.03 15.50 0.17 1.28 16 26 N -0.39 -3.96 11.50 30.47 0.35 -3.61 16 27 H 0.11 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.19 1.49 8.06 -52.49 -0.42 1.07 16 31 H 0.41 2.84 8.30 -40.82 -0.34 2.50 16 32 H 0.08 0.94 8.11 -51.92 -0.42 0.52 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.75 7.78 -51.93 -0.40 0.35 16 35 H 0.07 0.74 8.11 -51.93 -0.42 0.32 16 36 H 0.09 1.50 7.73 -52.48 -0.41 1.09 16 37 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.09 2.38 6.41 -51.93 -0.33 2.05 16 39 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 1.13 7.96 -51.93 -0.41 0.71 16 42 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.05 0.76 8.10 -51.93 -0.42 0.34 16 LS Contribution 367.13 15.07 5.53 5.53 Total: -1.00 -31.91 367.13 -6.73 -38.64 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -6.09 Total: -0.66 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: -1.31 Total: 0.07 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: 0.10 Total: -51.62 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.06 Total: -8.56 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.91 -6.73 -38.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159885895.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.964 kcal (2) G-P(sol) polarization free energy of solvation -31.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds