Wall clock time and date at job start Tue Mar 31 2020 13:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35734 * 116.99438 * 2 1 4 4 C 1.41860 * 126.78373 * 180.02562 * 3 2 1 5 5 C 1.36661 * 103.80774 * 179.70711 * 4 3 2 6 6 C 1.47544 * 126.87427 * 180.28221 * 5 4 3 7 7 O 1.21580 * 120.00299 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99814 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00152 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.47343 * 179.97438 * 9 8 6 11 11 C 1.50699 * 109.47221 * 180.02562 * 10 9 8 12 12 C 1.29453 * 117.70015 * 94.99678 * 11 10 9 13 13 C 1.50317 * 123.65652 * 180.85647 * 12 11 10 14 14 N 1.47015 * 109.16327 * 349.02538 * 13 12 11 15 15 C 1.36932 * 121.37372 * 222.96420 * 14 13 12 16 16 H 1.08002 * 119.99724 * 155.97001 * 15 14 13 17 17 C 1.38814 * 120.00257 * 335.97535 * 15 14 13 18 18 N 1.31625 * 119.99706 * 344.51362 * 17 15 14 19 19 Si 1.86798 * 119.99973 * 164.50994 * 17 15 14 20 20 H 1.48496 * 109.47479 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46624 * 120.00274 * 19 17 15 22 22 H 1.48500 * 109.47189 * 239.99481 * 19 17 15 23 23 C 1.47337 * 117.24807 * 42.94808 * 14 13 12 24 24 C 1.49976 * 117.69058 * 274.73871 * 11 10 9 25 25 O 1.34662 * 106.24636 * 0.25803 * 5 4 3 26 26 N 1.20872 * 111.62965 * 0.02562 * 25 5 4 27 27 H 1.09001 * 109.46505 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46996 * 299.99550 * 1 2 3 29 29 H 1.08996 * 109.47221 * 60.00216 * 1 2 3 30 30 H 1.08002 * 128.09272 * 359.96446 * 4 3 2 31 31 H 0.97000 * 120.00290 * 359.97438 * 8 6 5 32 32 H 1.09007 * 109.47245 * 299.99575 * 9 8 6 33 33 H 1.09000 * 109.47498 * 59.99460 * 9 8 6 34 34 H 1.09001 * 109.46892 * 299.99346 * 10 9 8 35 35 H 1.09000 * 109.47167 * 59.99377 * 10 9 8 36 36 H 1.08004 * 118.17129 * 0.88383 * 12 11 10 37 37 H 1.09003 * 109.52207 * 108.92965 * 13 12 11 38 38 H 1.08994 * 109.52311 * 229.11695 * 13 12 11 39 39 H 0.97006 * 119.99661 * 180.02562 * 18 17 15 40 40 H 1.08997 * 109.78334 * 57.81156 * 23 14 13 41 41 H 1.09005 * 109.77756 * 178.61935 * 23 14 13 42 42 H 1.09001 * 109.31196 * 281.28994 * 24 11 10 43 43 H 1.08997 * 109.31772 * 40.71694 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2095 0.0000 4 6 3.4431 1.4507 -0.0005 5 6 3.5388 2.8139 -0.0071 6 6 4.7783 3.6143 -0.0162 7 8 5.8602 3.0597 -0.0180 8 7 4.7111 4.9604 -0.0214 9 6 5.9416 5.7552 -0.0310 10 6 5.5874 7.2437 -0.0360 11 6 6.8533 8.0613 -0.0465 12 6 7.2986 8.4663 -1.1926 13 6 8.5562 9.2724 -1.3601 14 7 9.0164 9.7286 -0.0404 15 6 9.4690 11.0062 0.1543 16 1 9.4346 11.4469 1.1397 17 6 9.9721 11.7349 -0.9148 18 7 10.2998 11.1221 -2.0327 19 14 10.1837 13.5849 -0.7669 20 1 9.7461 14.0271 0.5814 21 1 11.6130 13.9368 -0.9632 22 1 9.3609 14.2615 -1.8016 23 6 8.9701 8.7544 1.0640 24 6 7.5053 8.3533 1.2722 25 8 2.2756 3.2803 -0.0041 26 7 1.4685 2.3806 0.0037 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 4.2442 0.7263 -0.0004 31 1 3.8479 5.4030 -0.0195 32 1 6.5302 5.5245 0.8570 33 1 6.5212 5.5170 -0.9229 34 1 4.9992 7.4742 -0.9242 35 1 5.0077 7.4822 0.8557 36 1 6.7347 8.2112 -2.0777 37 1 9.3266 8.6540 -1.8207 38 1 8.3538 10.1358 -1.9937 39 1 10.6517 11.6313 -2.7796 40 1 9.5638 7.8772 0.8072 41 1 9.3591 9.2103 1.9745 42 1 6.9719 9.1656 1.7660 43 1 7.4628 7.4636 1.9003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159885895.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:30 Heat of formation + Delta-G solvation = 11.412679 kcal Electronic energy + Delta-G solvation = -25742.703333 eV Core-core repulsion = 21792.282109 eV Total energy + Delta-G solvation = -3950.421224 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.15137 -40.87487 -39.96173 -39.42994 -36.85460 -35.21900 -34.36803 -33.42455 -32.80572 -31.44212 -30.19907 -28.62924 -27.30131 -25.40624 -24.53747 -24.38649 -23.64475 -22.45848 -21.94599 -20.19856 -19.41614 -19.13202 -17.99154 -17.68674 -17.25556 -17.12306 -16.92764 -16.71082 -16.40533 -15.97309 -15.72773 -15.44410 -15.25809 -15.01290 -14.92003 -14.67632 -14.27550 -13.84525 -13.36378 -13.19364 -13.17531 -12.92513 -12.82130 -12.79752 -12.63062 -12.56496 -12.33285 -12.11288 -11.88892 -11.66530 -11.58859 -11.13367 -11.07178 -10.67327 -10.49174 -10.24608 -9.44801 -8.72379 -7.86428 -5.28095 -0.42071 0.91735 1.30827 1.47103 1.48491 1.50555 1.59261 1.59962 1.80526 2.26635 2.52410 2.94035 3.30429 3.60554 3.68774 3.75300 3.96987 4.01633 4.12931 4.14304 4.23952 4.26768 4.34183 4.56549 4.60450 4.63137 4.63759 4.73172 4.90710 4.94585 5.01613 5.05064 5.22217 5.26864 5.28801 5.46072 5.54848 5.63302 5.80843 5.92361 6.20605 6.33320 6.36103 6.83109 6.91314 7.15515 7.86099 8.40345 9.22151 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.044914 B = 0.001834 C = 0.001822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.264885 B =15262.785390 C =15366.349459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.291 6.291 3 C 0.200 3.800 4 C -0.154 4.154 5 C -0.056 4.056 6 C 0.608 3.392 7 O -0.542 6.542 8 N -0.695 5.695 9 C 0.129 3.871 10 C -0.081 4.081 11 C -0.119 4.119 12 C -0.173 4.173 13 C 0.205 3.795 14 N -0.615 5.615 15 C -0.255 4.255 16 H 0.071 0.929 17 C -0.057 4.057 18 N -0.941 5.941 19 Si 0.969 3.031 20 H -0.265 1.265 21 H -0.293 1.293 22 H -0.291 1.291 23 C 0.134 3.866 24 C -0.088 4.088 25 O 0.123 5.877 26 N -0.398 5.398 27 H 0.136 0.864 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.202 0.798 31 H 0.422 0.578 32 H 0.073 0.927 33 H 0.063 0.937 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.115 0.885 37 H 0.003 0.997 38 H 0.053 0.947 39 H 0.249 0.751 40 H 0.020 0.980 41 H 0.057 0.943 42 H 0.068 0.932 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.529 -19.762 5.199 29.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.197 6.197 3 C 0.003 3.997 4 C -0.176 4.176 5 C -0.122 4.122 6 C 0.391 3.609 7 O -0.420 6.420 8 N -0.346 5.346 9 C 0.006 3.994 10 C -0.119 4.119 11 C -0.120 4.120 12 C -0.193 4.193 13 C 0.080 3.920 14 N -0.340 5.340 15 C -0.386 4.386 16 H 0.089 0.911 17 C -0.252 4.252 18 N -0.589 5.589 19 Si 0.798 3.202 20 H -0.190 1.190 21 H -0.221 1.221 22 H -0.217 1.217 23 C 0.009 3.991 24 C -0.126 4.126 25 O 0.056 5.944 26 N -0.122 5.122 27 H 0.154 0.846 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.220 0.780 31 H 0.260 0.740 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.104 0.896 35 H 0.114 0.886 36 H 0.133 0.867 37 H 0.020 0.980 38 H 0.072 0.928 39 H 0.058 0.942 40 H 0.038 0.962 41 H 0.076 0.924 42 H 0.086 0.914 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -21.850 -19.960 5.098 30.030 hybrid contribution 0.678 0.828 -0.471 1.170 sum -21.171 -19.132 4.627 28.908 Atomic orbital electron populations 1.23394 0.74756 1.06345 1.02574 1.86237 1.24573 1.19803 1.89096 1.22054 0.90886 0.86123 1.00656 1.22437 0.94792 0.95213 1.05188 1.23838 0.86785 0.93838 1.07769 1.16485 0.84817 0.82367 0.77252 1.90910 1.27795 1.71939 1.51369 1.45805 1.11820 1.04618 1.72379 1.21402 0.85424 0.89798 1.02746 1.20828 0.95203 0.91146 1.04699 1.20556 0.97384 0.99444 0.94649 1.22824 0.98366 0.99808 0.98264 1.19365 0.90388 0.95148 0.87113 1.44435 1.74036 1.09284 1.06196 1.19579 1.33599 0.89828 0.95544 0.91124 1.25776 0.99422 1.02702 0.97266 1.70205 1.47965 1.35289 1.05400 0.85166 0.76764 0.80518 0.77778 1.18975 1.22060 1.21745 1.21210 0.95271 0.91631 0.91022 1.20760 0.95824 1.01187 0.94847 1.84939 1.11514 1.29465 1.68441 1.73978 1.15985 0.97050 1.25180 0.84611 0.91951 0.92002 0.78046 0.73975 0.90872 0.91906 0.89598 0.88600 0.86743 0.97963 0.92825 0.94206 0.96223 0.92416 0.91374 0.89259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.73 113.37 1.22 1.43 16 2 O -0.29 -4.64 10.57 -90.57 -0.96 -5.60 16 3 C 0.20 3.60 8.00 85.78 0.69 4.29 16 4 C -0.15 -2.65 10.97 22.80 0.25 -2.40 16 5 C -0.06 -0.99 7.29 24.36 0.18 -0.81 16 6 C 0.61 12.26 7.82 86.70 0.68 12.94 16 7 O -0.54 -14.98 16.91 -3.97 -0.07 -15.05 16 8 N -0.69 -11.10 5.55 -466.26 -2.59 -13.69 16 9 C 0.13 2.55 5.66 86.38 0.49 3.04 16 10 C -0.08 -1.58 5.32 29.85 0.16 -1.42 16 11 C -0.12 -3.61 5.11 -15.14 -0.08 -3.68 16 12 C -0.17 -6.37 9.47 27.11 0.26 -6.11 16 13 C 0.20 10.11 5.23 85.41 0.45 10.55 16 14 N -0.62 -31.32 3.01 -703.02 -2.11 -33.43 16 15 C -0.26 -14.20 9.71 84.03 0.82 -13.38 16 16 H 0.07 3.80 7.88 -2.91 -0.02 3.77 16 17 C -0.06 -3.23 5.01 84.86 0.43 -2.80 16 18 N -0.94 -56.49 11.08 21.65 0.24 -56.25 16 19 Si 0.97 45.26 29.58 68.60 2.03 47.29 16 20 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 21 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 22 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 23 C 0.13 5.47 6.59 86.32 0.57 6.04 16 24 C -0.09 -2.73 5.95 29.72 0.18 -2.56 16 25 O 0.12 2.08 11.03 65.64 0.72 2.81 16 26 N -0.40 -7.41 11.50 -172.00 -1.98 -9.39 16 27 H 0.14 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.20 2.89 8.06 -2.91 -0.02 2.87 16 31 H 0.42 4.34 8.30 -92.71 -0.77 3.57 16 32 H 0.07 1.55 8.11 -2.38 -0.02 1.53 16 33 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.09 1.49 7.78 -2.39 -0.02 1.47 16 35 H 0.10 1.49 8.11 -2.39 -0.02 1.47 16 36 H 0.11 3.62 7.73 -2.91 -0.02 3.60 16 37 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 38 H 0.05 2.98 6.41 -2.39 -0.02 2.97 16 39 H 0.25 14.42 8.31 -92.70 -0.77 13.65 16 40 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.06 2.29 7.96 -2.38 -0.02 2.27 16 42 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.09 2.20 8.10 -2.39 -0.02 2.18 16 Total: -1.00 -71.50 367.13 1.82 -69.68 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: 0.27 Total: 8.51 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 6.27 Total: 5.12 kcal Atomic # 7 Polarization: -106.32 SS G_CDS: -6.44 Total: -112.76 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.30 Total: -17.84 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -71.50 1.82 -69.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159885895.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.093 kcal (2) G-P(sol) polarization free energy of solvation -71.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds