Wall clock time and date at job start Tue Mar 31 2020 13:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35950 * 116.99983 * 2 1 4 4 C 1.38746 * 119.97930 * 180.02562 * 3 2 1 5 5 C 1.38050 * 120.02094 * 180.27440 * 4 3 2 6 6 C 1.38918 * 119.98233 * 359.51729 * 5 4 3 7 7 N 1.39871 * 120.02624 * 180.22754 * 6 5 4 8 8 C 1.34772 * 120.00343 * 213.61647 * 7 6 5 9 9 O 1.21387 * 120.00084 * 5.27316 * 8 7 6 10 10 C 1.49332 * 119.99826 * 185.27735 * 8 7 6 11 11 O 1.21357 * 120.00140 * 0.02562 * 10 8 7 12 12 N 1.34778 * 119.99475 * 179.97438 * 10 8 7 13 13 C 1.46504 * 119.99884 * 180.02562 * 12 10 8 14 14 C 1.52995 * 109.47289 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.47109 * 179.97438 * 14 13 12 16 16 N 1.46498 * 109.47232 * 179.97438 * 15 14 13 17 17 C 1.36936 * 120.00022 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00198 * 0.02562 * 17 16 15 19 19 C 1.38822 * 119.99897 * 179.97438 * 17 16 15 20 20 N 1.31619 * 119.99885 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99596 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47508 * 60.00529 * 21 19 17 23 23 H 1.48508 * 109.46764 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47266 * 299.99677 * 21 19 17 25 25 C 1.38923 * 119.95368 * 0.48640 * 6 5 4 26 26 C 1.38053 * 119.98223 * 359.73980 * 25 6 5 27 27 H 1.09004 * 109.47359 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46850 * 299.99381 * 1 2 3 29 29 H 1.09002 * 109.47426 * 59.99560 * 1 2 3 30 30 H 1.08004 * 119.99083 * 0.02562 * 4 3 2 31 31 H 1.08008 * 120.01288 * 179.74816 * 5 4 3 32 32 H 0.97006 * 119.99326 * 33.61588 * 7 6 5 33 33 H 0.96996 * 120.00608 * 0.02562 * 12 10 8 34 34 H 1.09008 * 109.46697 * 300.00363 * 13 12 10 35 35 H 1.08998 * 109.47411 * 59.99501 * 13 12 10 36 36 H 1.08994 * 109.47265 * 299.99692 * 14 13 12 37 37 H 1.09000 * 109.46995 * 59.99967 * 14 13 12 38 38 H 1.08995 * 109.47687 * 299.99972 * 15 14 13 39 39 H 1.09006 * 109.46966 * 59.99942 * 15 14 13 40 40 H 0.97004 * 119.99905 * 0.02562 * 16 15 14 41 41 H 0.96998 * 119.99366 * 179.97438 * 20 19 17 42 42 H 1.08002 * 120.00651 * 179.72606 * 25 6 5 43 43 H 1.08000 * 119.98938 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 3.4318 1.2834 -0.0005 5 6 4.0594 2.5130 0.0052 6 6 3.3034 3.6784 0.0013 7 7 3.9383 4.9247 0.0023 8 6 3.3760 5.9670 0.6455 9 8 2.3692 5.8027 1.3033 10 6 3.9915 7.3242 0.5486 11 8 4.9978 7.4885 -0.1095 12 7 3.4288 8.3666 1.1914 13 6 4.0322 9.6982 1.0960 14 6 3.2043 10.6930 1.9119 15 6 3.8349 12.0835 1.8128 16 7 3.0418 13.0362 2.5935 17 6 3.4162 14.3520 2.6530 18 1 4.2960 14.6876 2.1241 19 6 2.6644 15.2549 3.3923 20 7 1.5919 14.8460 4.0365 21 14 3.1748 17.0499 3.4729 22 1 3.1810 17.6248 2.1037 23 1 2.2139 17.8002 4.3209 24 1 4.5356 17.1518 4.0587 25 6 1.9161 3.6052 0.0020 26 6 1.2901 2.3747 0.0010 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 4.0196 0.3773 -0.0014 31 1 5.1381 2.5690 0.0089 32 1 4.7835 5.0387 -0.4599 33 1 2.6243 8.2354 1.7171 34 1 5.0491 9.6651 1.4875 35 1 4.0547 10.0131 0.0528 36 1 2.1874 10.7262 1.5209 37 1 3.1823 10.3779 2.9551 38 1 4.8517 12.0502 2.2040 39 1 3.8572 12.3988 0.7695 40 1 2.2513 12.7349 3.0682 41 1 1.0668 15.4769 4.5534 42 1 1.3274 4.5107 0.0035 43 1 0.2116 2.3177 0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161963788.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:41 Heat of formation + Delta-G solvation = -65.028995 kcal Electronic energy + Delta-G solvation = -24953.109437 eV Core-core repulsion = 20999.373453 eV Total energy + Delta-G solvation = -3953.735984 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.37487 -40.33379 -39.10759 -37.67813 -36.31020 -35.00603 -34.29255 -32.04139 -31.55975 -29.91492 -29.59558 -27.69512 -26.14062 -24.48189 -23.38237 -22.62712 -21.88694 -21.30048 -20.42896 -19.03819 -18.57552 -17.75698 -17.08355 -16.78726 -16.47083 -16.15693 -16.13457 -15.60422 -15.24382 -14.95564 -14.63309 -14.28181 -14.17299 -14.10710 -13.67779 -13.30146 -13.21501 -13.18311 -13.06804 -12.54007 -12.40933 -12.00296 -11.86054 -11.74895 -11.31718 -10.99944 -10.95473 -10.81218 -10.66599 -10.41226 -10.13234 -9.88735 -9.71364 -9.44455 -9.35285 -8.89344 -8.18023 -6.95759 -5.78487 -3.07841 0.66702 0.90610 1.32034 2.01317 2.84356 2.88325 3.32195 3.36590 3.43845 3.48023 3.49196 4.14084 4.38634 4.42441 4.57089 4.64418 4.71624 4.80469 4.95419 4.98860 5.03696 5.06403 5.19719 5.37204 5.52095 5.55194 5.57112 5.78471 5.82095 5.92698 5.93391 5.96158 6.11293 6.14959 6.27279 6.30323 6.64997 6.73737 6.77826 6.93338 7.07964 7.41516 7.67947 7.71100 8.40201 9.51338 10.07995 10.42517 11.44318 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.033552 B = 0.001606 C = 0.001543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.326412 B =17430.914293 C =18143.781161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.318 6.318 3 C 0.115 3.885 4 C -0.132 4.132 5 C -0.099 4.099 6 C 0.105 3.895 7 N -0.643 5.643 8 C 0.508 3.492 9 O -0.500 6.500 10 C 0.507 3.493 11 O -0.520 6.520 12 N -0.691 5.691 13 C 0.120 3.880 14 C -0.140 4.140 15 C 0.157 3.843 16 N -0.733 5.733 17 C -0.243 4.243 18 H 0.071 0.929 19 C -0.013 4.013 20 N -0.934 5.934 21 Si 0.909 3.091 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.285 1.285 25 C -0.077 4.077 26 C -0.187 4.187 27 H 0.100 0.900 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.137 0.863 31 H 0.137 0.863 32 H 0.423 0.577 33 H 0.414 0.586 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.384 0.616 41 H 0.256 0.744 42 H 0.139 0.861 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.837 -31.702 -10.167 33.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.231 6.231 3 C 0.069 3.931 4 C -0.151 4.151 5 C -0.119 4.119 6 C 0.011 3.989 7 N -0.291 5.291 8 C 0.290 3.710 9 O -0.374 6.374 10 C 0.286 3.714 11 O -0.397 6.397 12 N -0.343 5.343 13 C -0.003 4.003 14 C -0.178 4.178 15 C 0.029 3.971 16 N -0.378 5.378 17 C -0.374 4.374 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.582 5.582 21 Si 0.740 3.260 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 C -0.097 4.097 26 C -0.207 4.207 27 H 0.118 0.882 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.155 0.845 31 H 0.154 0.846 32 H 0.261 0.739 33 H 0.251 0.749 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.040 0.960 39 H 0.040 0.960 40 H 0.218 0.782 41 H 0.066 0.934 42 H 0.157 0.843 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 1.003 -31.635 -10.181 33.248 hybrid contribution -0.286 1.090 0.314 1.170 sum 0.716 -30.545 -9.868 32.107 Atomic orbital electron populations 1.23086 0.78196 1.04054 1.01569 1.86072 1.21536 1.26761 1.88777 1.19058 0.92372 0.84253 0.97402 1.20204 0.91340 0.98066 1.05533 1.20738 0.99989 0.90155 1.00992 1.17619 0.91964 0.84202 1.05077 1.43097 1.26021 1.07580 1.52378 1.20403 0.84890 0.86051 0.79653 1.90798 1.24021 1.84538 1.37996 1.19767 0.84923 0.85377 0.81321 1.90788 1.24074 1.84795 1.40021 1.45900 1.30406 1.08434 1.49582 1.21574 0.97649 0.79409 1.01697 1.21977 0.99904 0.95640 1.00293 1.20510 0.94376 0.86888 0.95341 1.42320 1.31255 1.05358 1.58847 1.19200 1.08068 0.84855 1.25284 0.91116 1.24759 0.97639 0.98306 1.00245 1.69652 1.18005 1.34219 1.36338 0.86235 0.77488 0.84842 0.77422 1.21218 1.21658 1.21218 1.20971 0.92848 0.98338 0.97578 1.21147 1.00342 0.91601 1.07579 0.88158 0.92461 0.92522 0.84548 0.84568 0.73881 0.74945 0.90538 0.90538 0.90976 0.90968 0.95973 0.95984 0.78245 0.93425 0.84326 0.84902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.32 -2.54 10.50 -19.58 -0.21 -2.75 16 3 C 0.11 0.98 6.69 -39.20 -0.26 0.71 16 4 C -0.13 -1.01 9.98 -39.46 -0.39 -1.40 16 5 C -0.10 -0.73 9.96 -39.40 -0.39 -1.12 16 6 C 0.10 0.96 6.28 -83.68 -0.53 0.43 16 7 N -0.64 -5.78 5.33 -10.27 -0.05 -5.84 16 8 C 0.51 5.61 7.62 -11.64 -0.09 5.52 16 9 O -0.50 -6.38 14.16 5.46 0.08 -6.31 16 10 C 0.51 6.05 7.88 -11.64 -0.09 5.96 16 11 O -0.52 -7.16 16.48 5.49 0.09 -7.07 16 12 N -0.69 -7.96 5.55 -60.77 -0.34 -8.30 16 13 C 0.12 1.50 5.67 -4.04 -0.02 1.48 16 14 C -0.14 -2.06 5.44 -26.73 -0.15 -2.21 16 15 C 0.16 3.04 6.26 -4.04 -0.03 3.01 16 16 N -0.73 -18.47 5.60 -59.91 -0.34 -18.80 16 17 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 18 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 19 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -28.21 13.06 55.49 0.72 -27.49 16 21 Si 0.91 22.38 29.55 -169.99 -5.02 17.35 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 25 C -0.08 -0.75 8.65 -39.40 -0.34 -1.09 16 26 C -0.19 -1.57 9.03 -39.46 -0.36 -1.93 16 27 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.23 7.66 -51.93 -0.40 -0.16 16 29 H 0.06 0.21 7.66 -51.93 -0.40 -0.19 16 30 H 0.14 0.81 8.06 -52.48 -0.42 0.38 16 31 H 0.14 0.68 8.06 -52.48 -0.42 0.25 16 32 H 0.42 3.04 8.30 -40.82 -0.34 2.70 16 33 H 0.41 4.36 7.94 -40.82 -0.32 4.03 16 34 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 35 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.38 10.09 7.67 -40.82 -0.31 9.78 16 41 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 42 H 0.14 1.44 6.41 -52.49 -0.34 1.10 16 43 H 0.13 0.86 6.29 -52.49 -0.33 0.53 16 LS Contribution 371.49 15.07 5.60 5.60 Total: -1.00 -33.91 371.49 -7.15 -41.06 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -5.79 Total: 9.52 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: -1.90 Total: 3.02 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: 0.00 Total: -60.43 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.04 Total: -16.13 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.91 -7.15 -41.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161963788.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.969 kcal (2) G-P(sol) polarization free energy of solvation -33.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds