Wall clock time and date at job start Tue Mar 31 2020 13:39:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35950 * 116.99983 * 2 1 4 4 C 1.38746 * 119.97930 * 180.02562 * 3 2 1 5 5 C 1.38050 * 120.02094 * 180.27440 * 4 3 2 6 6 C 1.38918 * 119.98233 * 359.51729 * 5 4 3 7 7 N 1.39871 * 120.02624 * 180.22754 * 6 5 4 8 8 C 1.34772 * 120.00343 * 213.61647 * 7 6 5 9 9 O 1.21387 * 120.00084 * 5.27316 * 8 7 6 10 10 C 1.49332 * 119.99826 * 185.27735 * 8 7 6 11 11 O 1.21357 * 120.00140 * 0.02562 * 10 8 7 12 12 N 1.34778 * 119.99475 * 179.97438 * 10 8 7 13 13 C 1.46504 * 119.99884 * 180.02562 * 12 10 8 14 14 C 1.52995 * 109.47289 * 180.02562 * 13 12 10 15 15 C 1.53002 * 109.47109 * 179.97438 * 14 13 12 16 16 N 1.46498 * 109.47232 * 179.97438 * 15 14 13 17 17 C 1.36936 * 120.00022 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00198 * 0.02562 * 17 16 15 19 19 C 1.38822 * 119.99897 * 179.97438 * 17 16 15 20 20 N 1.31619 * 119.99885 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99596 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47508 * 60.00529 * 21 19 17 23 23 H 1.48508 * 109.46764 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47266 * 299.99677 * 21 19 17 25 25 C 1.38923 * 119.95368 * 0.48640 * 6 5 4 26 26 C 1.38053 * 119.98223 * 359.73980 * 25 6 5 27 27 H 1.09004 * 109.47359 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46850 * 299.99381 * 1 2 3 29 29 H 1.09002 * 109.47426 * 59.99560 * 1 2 3 30 30 H 1.08004 * 119.99083 * 0.02562 * 4 3 2 31 31 H 1.08008 * 120.01288 * 179.74816 * 5 4 3 32 32 H 0.97006 * 119.99326 * 33.61588 * 7 6 5 33 33 H 0.96996 * 120.00608 * 0.02562 * 12 10 8 34 34 H 1.09008 * 109.46697 * 300.00363 * 13 12 10 35 35 H 1.08998 * 109.47411 * 59.99501 * 13 12 10 36 36 H 1.08994 * 109.47265 * 299.99692 * 14 13 12 37 37 H 1.09000 * 109.46995 * 59.99967 * 14 13 12 38 38 H 1.08995 * 109.47687 * 299.99972 * 15 14 13 39 39 H 1.09006 * 109.46966 * 59.99942 * 15 14 13 40 40 H 0.97004 * 119.99905 * 0.02562 * 16 15 14 41 41 H 0.96998 * 119.99366 * 179.97438 * 20 19 17 42 42 H 1.08002 * 120.00651 * 179.72606 * 25 6 5 43 43 H 1.08000 * 119.98938 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 3.4318 1.2834 -0.0005 5 6 4.0594 2.5130 0.0052 6 6 3.3034 3.6784 0.0013 7 7 3.9383 4.9247 0.0023 8 6 3.3760 5.9670 0.6455 9 8 2.3692 5.8027 1.3033 10 6 3.9915 7.3242 0.5486 11 8 4.9978 7.4885 -0.1095 12 7 3.4288 8.3666 1.1914 13 6 4.0322 9.6982 1.0960 14 6 3.2043 10.6930 1.9119 15 6 3.8349 12.0835 1.8128 16 7 3.0418 13.0362 2.5935 17 6 3.4162 14.3520 2.6530 18 1 4.2960 14.6876 2.1241 19 6 2.6644 15.2549 3.3923 20 7 1.5919 14.8460 4.0365 21 14 3.1748 17.0499 3.4729 22 1 3.1810 17.6248 2.1037 23 1 2.2139 17.8002 4.3209 24 1 4.5356 17.1518 4.0587 25 6 1.9161 3.6052 0.0020 26 6 1.2901 2.3747 0.0010 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 4.0196 0.3773 -0.0014 31 1 5.1381 2.5690 0.0089 32 1 4.7835 5.0387 -0.4599 33 1 2.6243 8.2354 1.7171 34 1 5.0491 9.6651 1.4875 35 1 4.0547 10.0131 0.0528 36 1 2.1874 10.7262 1.5209 37 1 3.1823 10.3779 2.9551 38 1 4.8517 12.0502 2.2040 39 1 3.8572 12.3988 0.7695 40 1 2.2513 12.7349 3.0682 41 1 1.0668 15.4769 4.5534 42 1 1.3274 4.5107 0.0035 43 1 0.2116 2.3177 0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161963788.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:40 Heat of formation + Delta-G solvation = -90.314318 kcal Electronic energy + Delta-G solvation = -24954.205891 eV Core-core repulsion = 20999.373453 eV Total energy + Delta-G solvation = -3954.832438 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.19345 -41.01772 -39.95470 -38.37631 -37.61920 -36.22534 -35.41333 -33.75967 -32.16844 -31.41367 -30.38798 -28.23701 -27.42573 -25.79003 -24.38456 -23.75437 -22.68244 -22.62714 -21.35822 -19.95008 -19.19895 -19.03054 -18.51225 -17.63289 -17.37717 -17.06204 -16.76659 -16.62981 -16.33782 -16.20466 -15.61273 -15.31940 -15.27535 -15.14359 -14.80288 -14.73946 -14.31003 -13.91563 -13.80601 -13.73405 -13.31622 -12.92246 -12.84555 -12.78358 -12.62767 -12.43764 -12.41204 -12.08896 -12.08619 -11.88264 -11.78797 -11.11874 -10.92657 -10.78898 -10.35024 -10.06165 -9.01082 -8.83223 -7.95726 -5.24991 -0.10814 0.28983 0.53944 1.14817 1.48595 1.51614 1.57757 1.98995 2.34982 2.48702 2.58284 2.72181 3.26295 3.38285 3.71044 3.79443 3.86311 4.06326 4.15389 4.25993 4.31246 4.39829 4.40815 4.41728 4.45877 4.68083 4.71252 4.72044 4.78756 4.84692 4.99919 5.07407 5.18473 5.27119 5.30225 5.31123 5.31226 5.49640 5.65501 5.85999 6.22139 6.26908 6.38336 6.60733 6.79760 7.33143 8.08620 8.31288 9.27566 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.033552 B = 0.001606 C = 0.001543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 834.326412 B =17430.914293 C =18143.781161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.108 3.892 4 C -0.137 4.137 5 C -0.090 4.090 6 C 0.086 3.914 7 N -0.629 5.629 8 C 0.511 3.489 9 O -0.521 6.521 10 C 0.511 3.489 11 O -0.539 6.539 12 N -0.686 5.686 13 C 0.131 3.869 14 C -0.123 4.123 15 C 0.152 3.848 16 N -0.748 5.748 17 C -0.251 4.251 18 H 0.077 0.923 19 C -0.075 4.075 20 N -0.969 5.969 21 Si 0.975 3.025 22 H -0.277 1.277 23 H -0.295 1.295 24 H -0.277 1.277 25 C -0.093 4.093 26 C -0.193 4.193 27 H 0.120 0.880 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.155 0.845 31 H 0.163 0.837 32 H 0.432 0.568 33 H 0.420 0.580 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.375 0.625 41 H 0.252 0.748 42 H 0.126 0.874 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.768 -32.849 -10.844 34.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.245 6.245 3 C 0.062 3.938 4 C -0.156 4.156 5 C -0.110 4.110 6 C -0.008 4.008 7 N -0.277 5.277 8 C 0.293 3.707 9 O -0.397 6.397 10 C 0.291 3.709 11 O -0.416 6.416 12 N -0.339 5.339 13 C 0.007 3.993 14 C -0.161 4.161 15 C 0.026 3.974 16 N -0.391 5.391 17 C -0.383 4.383 18 H 0.095 0.905 19 C -0.268 4.268 20 N -0.620 5.620 21 Si 0.804 3.196 22 H -0.203 1.203 23 H -0.221 1.221 24 H -0.203 1.203 25 C -0.113 4.113 26 C -0.212 4.212 27 H 0.138 0.862 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.172 0.828 31 H 0.180 0.820 32 H 0.272 0.728 33 H 0.257 0.743 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.207 0.793 41 H 0.060 0.940 42 H 0.144 0.856 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.969 -32.822 -10.897 34.639 hybrid contribution -0.572 1.308 0.470 1.503 sum 1.397 -31.513 -10.427 33.223 Atomic orbital electron populations 1.23340 0.76619 1.05611 1.02143 1.86059 1.23268 1.26530 1.88645 1.19278 0.92956 0.84459 0.97131 1.20522 0.91350 0.98874 1.04883 1.21002 1.01219 0.89305 0.99494 1.17806 0.92060 0.84574 1.06316 1.43000 1.26022 1.07183 1.51498 1.20187 0.84664 0.86022 0.79804 1.90795 1.24933 1.84716 1.39223 1.19869 0.84539 0.85685 0.80793 1.90780 1.24875 1.85117 1.40850 1.45801 1.30519 1.08026 1.49532 1.21360 0.97224 0.79353 1.01327 1.21741 0.99897 0.93619 1.00881 1.20686 0.94115 0.88155 0.94486 1.42550 1.31569 1.05554 1.59441 1.19640 1.07887 0.86302 1.24455 0.90494 1.25598 0.97998 1.02563 1.00595 1.69808 1.19287 1.35330 1.37532 0.85186 0.77134 0.79762 0.77517 1.20320 1.22120 1.20329 1.20991 0.93305 0.98380 0.98647 1.21286 1.01197 0.91252 1.07489 0.86203 0.92090 0.91740 0.82757 0.81981 0.72845 0.74287 0.90269 0.90281 0.90832 0.90851 0.95569 0.95580 0.79340 0.93960 0.85598 0.83581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 113.37 1.11 1.25 16 2 O -0.33 -4.88 10.50 -92.99 -0.98 -5.86 16 3 C 0.11 1.71 6.69 22.51 0.15 1.86 16 4 C -0.14 -1.87 9.98 22.35 0.22 -1.64 16 5 C -0.09 -1.18 9.96 22.39 0.22 -0.95 16 6 C 0.09 1.49 6.28 38.19 0.24 1.73 16 7 N -0.63 -10.73 5.33 -304.75 -1.62 -12.35 16 8 C 0.51 10.99 7.62 87.23 0.66 11.65 16 9 O -0.52 -13.23 14.16 -3.36 -0.05 -13.28 16 10 C 0.51 11.72 7.88 87.23 0.69 12.41 16 11 O -0.54 -14.20 16.48 -3.27 -0.05 -14.25 16 12 N -0.69 -15.08 5.55 -464.53 -2.58 -17.66 16 13 C 0.13 3.10 5.67 86.38 0.49 3.59 16 14 C -0.12 -3.51 5.44 30.59 0.17 -3.34 16 15 C 0.15 5.77 6.26 86.38 0.54 6.31 16 16 N -0.75 -37.63 5.60 -343.44 -1.92 -39.55 16 17 C -0.25 -14.02 9.99 84.04 0.84 -13.18 16 18 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 19 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 20 N -0.97 -59.18 13.06 21.65 0.28 -58.89 16 21 Si 0.98 45.93 29.55 68.60 2.03 47.96 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 24 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 25 C -0.09 -1.79 8.65 22.39 0.19 -1.59 16 26 C -0.19 -3.14 9.03 22.35 0.20 -2.94 16 27 H 0.12 0.43 8.14 -2.38 -0.02 0.41 16 28 H 0.06 0.43 7.66 -2.38 -0.02 0.41 16 29 H 0.06 0.40 7.66 -2.39 -0.02 0.38 16 30 H 0.15 1.48 8.06 -2.91 -0.02 1.45 16 31 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 32 H 0.43 5.65 8.30 -92.70 -0.77 4.88 16 33 H 0.42 8.46 7.94 -92.71 -0.74 7.72 16 34 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 35 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 40 H 0.37 19.91 7.67 -92.71 -0.71 19.20 16 41 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 42 H 0.13 2.69 6.41 -2.91 -0.02 2.67 16 43 H 0.15 1.81 6.29 -2.91 -0.02 1.79 16 Total: -1.00 -71.64 371.49 0.16 -71.48 By element: Atomic # 1 Polarization: 32.26 SS G_CDS: -1.15 Total: 31.12 kcal Atomic # 6 Polarization: 5.10 SS G_CDS: 6.20 Total: 11.30 kcal Atomic # 7 Polarization: -122.62 SS G_CDS: -5.84 Total: -128.46 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -1.08 Total: -33.39 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -71.64 0.16 -71.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161963788.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.836 kcal (2) G-P(sol) polarization free energy of solvation -71.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds