Wall clock time and date at job start Tue Mar 31 2020 13:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47107 * 110.98666 * 2 1 4 4 C 1.53096 * 109.21343 * 177.63105 * 3 2 1 5 5 O 1.43009 * 109.29270 * 56.83060 * 4 3 2 6 6 C 1.43014 * 113.73864 * 301.30900 * 5 4 3 7 7 H 1.08997 * 109.51217 * 298.73561 * 6 5 4 8 8 C 1.53004 * 109.50684 * 178.60565 * 6 5 4 9 9 N 1.46497 * 109.47211 * 65.00155 * 8 6 5 10 10 C 1.37653 * 120.00209 * 180.02562 * 9 8 6 11 11 C 1.40186 * 119.80983 * 359.73002 * 10 9 8 12 12 C 1.35803 * 120.19097 * 179.71895 * 11 10 9 13 13 C 1.41759 * 119.80086 * 0.54909 * 12 11 10 14 14 C 1.39515 * 120.18347 * 179.70299 * 13 12 11 15 15 H 1.08002 * 120.00059 * 145.04485 * 14 13 12 16 16 C 1.46594 * 119.99657 * 325.03806 * 14 13 12 17 17 N 1.29487 * 120.00656 * 351.59052 * 16 14 13 18 18 Si 1.86805 * 119.99514 * 171.58256 * 16 14 13 19 19 H 1.48500 * 109.47225 * 90.00580 * 18 16 14 20 20 H 1.48507 * 109.46911 * 210.00123 * 18 16 14 21 21 H 1.48496 * 109.47291 * 330.00321 * 18 16 14 22 22 C 1.41715 * 119.63299 * 359.72295 * 13 12 11 23 23 N 1.48003 * 120.10040 * 179.97438 * 22 13 12 24 24 O 1.31706 * 120.00496 * 173.86041 * 23 22 13 25 25 O 1.31706 * 120.00194 * 353.85897 * 23 22 13 26 26 C 1.35835 * 119.80072 * 359.97438 * 22 13 12 27 27 C 1.47020 * 110.99801 * 236.35413 * 2 1 3 28 28 H 1.08998 * 109.46660 * 183.65725 * 1 2 3 29 29 H 1.09000 * 109.46766 * 303.64860 * 1 2 3 30 30 H 1.08997 * 109.47659 * 63.64865 * 1 2 3 31 31 H 1.09008 * 109.56034 * 57.68783 * 3 2 1 32 32 H 1.09004 * 109.50078 * 297.53613 * 3 2 1 33 33 H 1.09000 * 109.50197 * 296.87614 * 4 3 2 34 34 H 1.09000 * 109.50751 * 176.78624 * 4 3 2 35 35 H 1.09001 * 109.46851 * 185.00125 * 8 6 5 36 36 H 1.09001 * 109.47287 * 305.00079 * 8 6 5 37 37 H 0.97003 * 119.99806 * 0.02562 * 9 8 6 38 38 H 1.07990 * 119.90401 * 359.97438 * 11 10 9 39 39 H 1.07998 * 120.10006 * 180.29227 * 12 11 10 40 40 H 0.96997 * 120.00515 * 180.02562 * 17 16 14 41 41 H 1.08006 * 119.90201 * 180.02562 * 26 22 13 42 42 H 1.08993 * 109.50821 * 62.45336 * 27 2 1 43 43 H 1.08995 * 109.50148 * 302.31655 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3735 0.0000 4 6 3.5249 1.3266 0.0598 5 8 4.0174 0.5573 -1.0406 6 6 3.5249 -0.7851 -1.0708 7 1 3.8385 -1.3083 -0.1676 8 6 4.0825 -1.5063 -2.2997 9 7 5.5369 -1.6302 -2.1751 10 6 6.2626 -2.2483 -3.1681 11 6 5.6052 -2.7628 -4.2943 12 6 6.3141 -3.3691 -5.2813 13 6 7.7216 -3.4911 -5.1647 14 6 8.4571 -4.1179 -6.1710 15 1 9.4486 -3.7657 -6.4144 16 6 7.8840 -5.2547 -6.8979 17 7 6.7690 -5.7808 -6.5019 18 14 8.7622 -5.9441 -8.3955 19 1 9.7040 -7.0104 -7.9698 20 1 7.7639 -6.5124 -9.3367 21 1 9.5167 -4.8578 -9.0706 22 6 8.3774 -2.9732 -4.0201 23 7 9.8464 -3.0955 -3.8875 24 8 10.4683 -2.5094 -2.8853 25 8 10.5319 -3.7904 -4.7717 26 6 7.6537 -2.3643 -3.0451 27 6 1.9958 -0.7605 -1.1426 28 1 -0.3632 -1.0256 0.0656 29 1 -0.3633 0.5694 0.8555 30 1 -0.3634 0.4561 -0.9208 31 1 1.6139 1.9109 0.8681 32 1 1.6826 1.8834 -0.9111 33 1 3.8385 0.8648 0.9960 34 1 3.9227 2.3398 0.0025 35 1 3.6380 -2.4990 -2.3710 36 1 3.8420 -0.9352 -3.1964 37 1 5.9885 -1.2767 -1.3928 38 1 4.5323 -2.6732 -4.3792 39 1 5.8067 -3.7607 -6.1505 40 1 6.3901 -6.5332 -6.9827 41 1 8.1519 -1.9687 -2.1723 42 1 1.6827 -0.2848 -2.0719 43 1 1.6134 -1.7806 -1.1082 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162688457.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:59 Heat of formation + Delta-G solvation = 3.829183 kcal Electronic energy + Delta-G solvation = -26669.000589 eV Core-core repulsion = 22718.250520 eV Total energy + Delta-G solvation = -3950.750069 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.98945 -38.66774 -36.71750 -36.00559 -35.29350 -33.89667 -32.35811 -31.89240 -30.25463 -29.58694 -28.95963 -26.73217 -25.05719 -24.41873 -23.93802 -22.48475 -21.50291 -20.63747 -19.94268 -18.16920 -17.05561 -16.77016 -16.48027 -16.23985 -15.76064 -15.60061 -15.43143 -15.18424 -14.74141 -14.46659 -14.07508 -13.96238 -13.95112 -13.50027 -13.06829 -12.99191 -12.71136 -12.61712 -12.36741 -12.19152 -11.86265 -11.68813 -11.50222 -11.39420 -11.32021 -11.06668 -10.74849 -10.49670 -10.32845 -9.91206 -9.87164 -9.30071 -9.20988 -8.91315 -8.80222 -8.72115 -8.23149 -7.59226 -6.88978 -4.69524 1.09434 2.48164 2.79716 2.85382 2.91900 2.98150 3.27363 3.39858 3.52861 3.53674 4.02811 4.05041 4.59286 4.62659 4.69537 4.82388 4.90857 4.99907 5.05199 5.10218 5.17218 5.29573 5.39864 5.44227 5.46217 5.55276 5.72836 5.85140 5.86842 5.89675 6.24167 6.37403 6.49206 6.51574 6.52682 6.82496 6.86645 6.97771 7.10847 7.34458 7.43265 7.62217 7.95709 8.03811 8.14964 8.28597 8.49359 8.99212 9.30118 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018935 B = 0.002811 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.402220 B = 9959.775680 C =11223.251667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.016 3.984 4 C 0.063 3.937 5 O -0.372 6.372 6 C 0.084 3.916 7 H 0.073 0.927 8 C 0.145 3.855 9 N -0.743 5.743 10 C 0.124 3.876 11 C -0.137 4.137 12 C -0.086 4.086 13 C 0.077 3.923 14 C -0.327 4.327 15 H 0.127 0.873 16 C 0.058 3.942 17 N -0.722 5.722 18 Si 0.937 3.063 19 H -0.255 1.255 20 H -0.270 1.270 21 H -0.247 1.247 22 C -0.062 4.062 23 N 0.039 4.961 24 O -0.369 6.369 25 O -0.294 6.294 26 C -0.133 4.133 27 C 0.026 3.974 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.027 0.973 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.059 0.941 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.395 0.605 38 H 0.108 0.892 39 H 0.130 0.870 40 H 0.303 0.697 41 H 0.116 0.884 42 H 0.047 0.953 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.711 6.724 5.300 19.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.267 5.267 3 C -0.112 4.112 4 C -0.015 4.015 5 O -0.291 6.291 6 C 0.026 3.974 7 H 0.091 0.909 8 C 0.019 3.981 9 N -0.378 5.378 10 C 0.022 3.978 11 C -0.158 4.158 12 C -0.106 4.106 13 C 0.071 3.929 14 C -0.356 4.356 15 H 0.144 0.856 16 C -0.173 4.173 17 N -0.344 5.344 18 Si 0.758 3.242 19 H -0.180 1.180 20 H -0.194 1.194 21 H -0.170 1.170 22 C -0.166 4.166 23 N 0.451 4.549 24 O -0.508 6.508 25 O -0.450 6.450 26 C -0.158 4.158 27 C -0.103 4.103 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.046 0.954 31 H 0.103 0.897 32 H 0.062 0.938 33 H 0.078 0.922 34 H 0.117 0.883 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.229 0.771 38 H 0.126 0.874 39 H 0.147 0.853 40 H 0.116 0.884 41 H 0.134 0.866 42 H 0.065 0.935 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.933 6.476 5.604 19.873 hybrid contribution 0.118 0.076 -0.571 0.588 sum -17.815 6.552 5.033 19.638 Atomic orbital electron populations 1.22383 0.86730 1.02566 1.00666 1.62217 1.08321 1.13659 1.42541 1.22854 0.96922 0.89756 1.01695 1.22649 0.91822 0.96666 0.90331 1.88101 1.69713 1.23233 1.48047 1.22390 0.91798 0.83931 0.99324 0.90893 1.21079 0.82646 0.98396 0.95982 1.43436 1.04317 1.66911 1.23170 1.17051 0.89355 1.00447 0.90916 1.20425 0.98427 1.02638 0.94348 1.21032 0.92734 0.98162 0.98710 1.17254 0.92152 0.93124 0.90346 1.22103 1.02616 1.04561 1.06332 0.85551 1.27980 0.94053 0.96489 0.98750 1.69057 1.14958 1.15958 1.34416 0.85781 0.79920 0.80467 0.77991 1.17968 1.19431 1.17048 1.19372 0.76793 1.20502 0.99964 1.49606 1.03888 1.00307 1.01091 1.96048 1.72969 1.55064 1.26686 1.96012 1.67899 1.42889 1.38170 1.19288 0.91418 1.05506 0.99629 1.22730 0.95603 0.99734 0.92246 0.91015 0.91192 0.95424 0.89665 0.93848 0.92244 0.88320 0.91401 0.92234 0.77112 0.87433 0.85265 0.88443 0.86604 0.93472 0.89220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.60 60.06 0.58 0.75 16 2 N -0.54 -4.83 4.99 -242.51 -1.21 -6.04 16 3 C 0.02 0.13 5.67 -3.66 -0.02 0.11 16 4 C 0.06 0.58 7.01 37.21 0.26 0.84 16 5 O -0.37 -4.58 10.42 -35.23 -0.37 -4.95 16 6 C 0.08 0.93 2.84 -26.68 -0.08 0.86 16 7 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 8 C 0.14 1.85 4.54 -4.04 -0.02 1.83 16 9 N -0.74 -12.02 5.60 -58.49 -0.33 -12.34 16 10 C 0.12 2.49 6.67 -83.81 -0.56 1.93 16 11 C -0.14 -2.68 9.21 -39.72 -0.37 -3.04 16 12 C -0.09 -1.88 8.62 -39.11 -0.34 -2.22 16 13 C 0.08 1.92 5.52 -106.75 -0.59 1.33 16 14 C -0.33 -8.08 7.83 -35.74 -0.28 -8.36 16 15 H 0.13 3.28 5.88 -52.49 -0.31 2.97 16 16 C 0.06 1.24 5.42 -15.17 -0.08 1.16 16 17 N -0.72 -15.17 11.29 55.99 0.63 -14.54 16 18 Si 0.94 16.31 29.65 -169.99 -5.04 11.27 16 19 H -0.26 -4.57 7.11 56.52 0.40 -4.17 16 20 H -0.27 -4.32 7.11 56.52 0.40 -3.92 16 21 H -0.25 -4.35 7.11 56.52 0.40 -3.95 16 22 C -0.06 -1.65 6.89 -79.49 -0.55 -2.20 16 23 N 0.04 1.15 4.98 34.19 0.17 1.32 16 24 O -0.37 -11.13 19.14 -31.57 -0.60 -11.73 16 25 O -0.29 -8.78 16.26 -31.57 -0.51 -9.30 16 26 C -0.13 -3.12 9.35 -39.73 -0.37 -3.50 16 27 C 0.03 0.24 4.95 -3.71 -0.02 0.22 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.08 0.56 8.14 -51.92 -0.42 0.13 16 32 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.81 7.90 -51.93 -0.41 0.40 16 36 H 0.06 0.79 7.92 -51.93 -0.41 0.38 16 37 H 0.40 6.16 8.46 -40.82 -0.35 5.82 16 38 H 0.11 1.76 6.66 -52.49 -0.35 1.41 16 39 H 0.13 2.70 6.67 -52.49 -0.35 2.35 16 40 H 0.30 5.50 8.27 -40.82 -0.34 5.16 16 41 H 0.12 2.70 7.55 -52.48 -0.40 2.31 16 42 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 358.47 15.07 5.40 5.40 Total: -1.00 -31.18 358.47 -10.22 -41.40 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -5.93 Total: 9.81 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -2.43 Total: -10.29 kcal Atomic # 7 Polarization: -30.87 SS G_CDS: -0.73 Total: -31.61 kcal Atomic # 8 Polarization: -24.49 SS G_CDS: -1.48 Total: -25.98 kcal Atomic # 14 Polarization: 16.31 SS G_CDS: -5.04 Total: 11.27 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -31.18 -10.22 -41.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162688457.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.226 kcal (2) G-P(sol) polarization free energy of solvation -31.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds