Wall clock time and date at job start Tue Mar 31 2020 13:21:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47107 * 110.98666 * 2 1 4 4 C 1.53096 * 109.21343 * 177.63105 * 3 2 1 5 5 O 1.43009 * 109.29270 * 56.83060 * 4 3 2 6 6 C 1.43014 * 113.73864 * 301.30900 * 5 4 3 7 7 H 1.08997 * 109.51217 * 298.73561 * 6 5 4 8 8 C 1.53004 * 109.50684 * 178.60565 * 6 5 4 9 9 N 1.46497 * 109.47211 * 65.00155 * 8 6 5 10 10 C 1.37653 * 120.00209 * 180.02562 * 9 8 6 11 11 C 1.40186 * 119.80983 * 359.73002 * 10 9 8 12 12 C 1.35803 * 120.19097 * 179.71895 * 11 10 9 13 13 C 1.41759 * 119.80086 * 0.54909 * 12 11 10 14 14 C 1.39515 * 120.18347 * 179.70299 * 13 12 11 15 15 H 1.08002 * 120.00059 * 145.04485 * 14 13 12 16 16 C 1.46594 * 119.99657 * 325.03806 * 14 13 12 17 17 N 1.29487 * 120.00656 * 351.59052 * 16 14 13 18 18 Si 1.86805 * 119.99514 * 171.58256 * 16 14 13 19 19 H 1.48500 * 109.47225 * 90.00580 * 18 16 14 20 20 H 1.48507 * 109.46911 * 210.00123 * 18 16 14 21 21 H 1.48496 * 109.47291 * 330.00321 * 18 16 14 22 22 C 1.41715 * 119.63299 * 359.72295 * 13 12 11 23 23 N 1.48003 * 120.10040 * 179.97438 * 22 13 12 24 24 O 1.31706 * 120.00496 * 173.86041 * 23 22 13 25 25 O 1.31706 * 120.00194 * 353.85897 * 23 22 13 26 26 C 1.35835 * 119.80072 * 359.97438 * 22 13 12 27 27 C 1.47020 * 110.99801 * 236.35413 * 2 1 3 28 28 H 1.08998 * 109.46660 * 183.65725 * 1 2 3 29 29 H 1.09000 * 109.46766 * 303.64860 * 1 2 3 30 30 H 1.08997 * 109.47659 * 63.64865 * 1 2 3 31 31 H 1.09008 * 109.56034 * 57.68783 * 3 2 1 32 32 H 1.09004 * 109.50078 * 297.53613 * 3 2 1 33 33 H 1.09000 * 109.50197 * 296.87614 * 4 3 2 34 34 H 1.09000 * 109.50751 * 176.78624 * 4 3 2 35 35 H 1.09001 * 109.46851 * 185.00125 * 8 6 5 36 36 H 1.09001 * 109.47287 * 305.00079 * 8 6 5 37 37 H 0.97003 * 119.99806 * 0.02562 * 9 8 6 38 38 H 1.07990 * 119.90401 * 359.97438 * 11 10 9 39 39 H 1.07998 * 120.10006 * 180.29227 * 12 11 10 40 40 H 0.96997 * 120.00515 * 180.02562 * 17 16 14 41 41 H 1.08006 * 119.90201 * 180.02562 * 26 22 13 42 42 H 1.08993 * 109.50821 * 62.45336 * 27 2 1 43 43 H 1.08995 * 109.50148 * 302.31655 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3735 0.0000 4 6 3.5249 1.3266 0.0598 5 8 4.0174 0.5573 -1.0406 6 6 3.5249 -0.7851 -1.0708 7 1 3.8385 -1.3083 -0.1676 8 6 4.0825 -1.5063 -2.2997 9 7 5.5369 -1.6302 -2.1751 10 6 6.2626 -2.2483 -3.1681 11 6 5.6052 -2.7628 -4.2943 12 6 6.3141 -3.3691 -5.2813 13 6 7.7216 -3.4911 -5.1647 14 6 8.4571 -4.1179 -6.1710 15 1 9.4486 -3.7657 -6.4144 16 6 7.8840 -5.2547 -6.8979 17 7 6.7690 -5.7808 -6.5019 18 14 8.7622 -5.9441 -8.3955 19 1 9.7040 -7.0104 -7.9698 20 1 7.7639 -6.5124 -9.3367 21 1 9.5167 -4.8578 -9.0706 22 6 8.3774 -2.9732 -4.0201 23 7 9.8464 -3.0955 -3.8875 24 8 10.4683 -2.5094 -2.8853 25 8 10.5319 -3.7904 -4.7717 26 6 7.6537 -2.3643 -3.0451 27 6 1.9958 -0.7605 -1.1426 28 1 -0.3632 -1.0256 0.0656 29 1 -0.3633 0.5694 0.8555 30 1 -0.3634 0.4561 -0.9208 31 1 1.6139 1.9109 0.8681 32 1 1.6826 1.8834 -0.9111 33 1 3.8385 0.8648 0.9960 34 1 3.9227 2.3398 0.0025 35 1 3.6380 -2.4990 -2.3710 36 1 3.8420 -0.9352 -3.1964 37 1 5.9885 -1.2767 -1.3928 38 1 4.5323 -2.6732 -4.3792 39 1 5.8067 -3.7607 -6.1505 40 1 6.3901 -6.5332 -6.9827 41 1 8.1519 -1.9687 -2.1723 42 1 1.6827 -0.2848 -2.0719 43 1 1.6134 -1.7806 -1.1082 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162688457.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:58 Heat of formation + Delta-G solvation = -19.268884 kcal Electronic energy + Delta-G solvation = -26670.002196 eV Core-core repulsion = 22718.250520 eV Total energy + Delta-G solvation = -3951.751677 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.87399 -40.32564 -38.29089 -37.20466 -36.60385 -35.53026 -34.11988 -33.07264 -32.00533 -31.04255 -29.85993 -28.13525 -26.47168 -25.77675 -25.04667 -23.63308 -23.11666 -21.60086 -21.40791 -20.06881 -18.61862 -18.06127 -17.59084 -17.44659 -17.32308 -16.77947 -16.51870 -16.11228 -15.89299 -15.83552 -15.63343 -15.43670 -14.82469 -14.69572 -14.64489 -14.59001 -13.97519 -13.65022 -13.39240 -13.23609 -13.14016 -12.97667 -12.84528 -12.77833 -12.33828 -12.23810 -12.00668 -11.93805 -11.61970 -11.50481 -11.11298 -10.97754 -10.91974 -10.67461 -10.55461 -10.06058 -9.43852 -9.42879 -8.57391 -6.66407 -0.92581 0.77333 1.08552 1.30859 1.46764 1.52027 1.63069 2.09721 2.25303 2.49678 2.74270 2.93002 3.12691 3.79333 3.89330 3.97293 4.06050 4.07959 4.18780 4.27871 4.34119 4.36659 4.51196 4.53938 4.59149 4.63598 4.65006 4.68006 4.72836 4.81605 4.89512 4.99572 5.01759 5.04818 5.10891 5.30859 5.50441 5.60291 5.79516 5.88742 5.94577 6.01841 6.06230 6.17876 6.38824 6.63461 6.86784 7.20408 7.47948 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018935 B = 0.002811 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.402220 B = 9959.775680 C =11223.251667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.555 5.555 3 C 0.019 3.981 4 C 0.057 3.943 5 O -0.399 6.399 6 C 0.087 3.913 7 H 0.069 0.931 8 C 0.135 3.865 9 N -0.728 5.728 10 C 0.198 3.802 11 C -0.140 4.140 12 C -0.057 4.057 13 C 0.013 3.987 14 C -0.253 4.253 15 H 0.108 0.892 16 C 0.020 3.980 17 N -0.691 5.691 18 Si 1.003 2.997 19 H -0.265 1.265 20 H -0.224 1.224 21 H -0.255 1.255 22 C -0.029 4.029 23 N 0.018 4.982 24 O -0.502 6.502 25 O -0.421 6.421 26 C -0.218 4.218 27 C 0.030 3.970 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.029 0.971 31 H 0.102 0.898 32 H 0.040 0.960 33 H 0.058 0.942 34 H 0.110 0.890 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.399 0.601 38 H 0.162 0.838 39 H 0.153 0.847 40 H 0.333 0.667 41 H 0.097 0.903 42 H 0.047 0.953 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.830 5.162 2.454 25.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.280 5.280 3 C -0.109 4.109 4 C -0.019 4.019 5 O -0.318 6.318 6 C 0.029 3.971 7 H 0.087 0.913 8 C 0.011 3.989 9 N -0.359 5.359 10 C 0.089 3.911 11 C -0.161 4.161 12 C -0.077 4.077 13 C 0.008 3.992 14 C -0.284 4.284 15 H 0.126 0.874 16 C -0.213 4.213 17 N -0.314 5.314 18 Si 0.819 3.181 19 H -0.189 1.189 20 H -0.146 1.146 21 H -0.179 1.179 22 C -0.145 4.145 23 N 0.379 4.621 24 O -0.607 6.607 25 O -0.540 6.540 26 C -0.245 4.245 27 C -0.098 4.098 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.048 0.952 31 H 0.120 0.880 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.128 0.872 35 H 0.112 0.888 36 H 0.088 0.912 37 H 0.233 0.767 38 H 0.179 0.821 39 H 0.171 0.829 40 H 0.148 0.852 41 H 0.115 0.885 42 H 0.065 0.935 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -24.751 4.933 2.885 25.402 hybrid contribution 1.234 0.357 -0.087 1.288 sum -23.517 5.290 2.798 24.267 Atomic orbital electron populations 1.22432 0.85375 1.03267 1.01212 1.62233 1.09580 1.13856 1.42370 1.22838 0.95943 0.89771 1.02306 1.22816 0.92833 0.96847 0.89420 1.88056 1.70588 1.23873 1.49277 1.22332 0.93160 0.83442 0.98209 0.91294 1.21459 0.79678 1.00316 0.97409 1.43864 1.06292 1.63888 1.21875 1.17330 0.88152 0.95008 0.90567 1.20874 1.00806 1.01615 0.92763 1.21286 0.90483 0.96311 0.99668 1.17775 0.94365 0.96392 0.90703 1.22881 1.01407 1.01663 1.02458 0.87377 1.28814 0.95404 0.95562 1.01502 1.68907 1.13675 1.14938 1.33865 0.84880 0.79476 0.79303 0.74482 1.18929 1.14594 1.17857 1.19958 0.76246 1.17591 1.00697 1.49344 1.04121 1.05734 1.02946 1.95898 1.73957 1.60592 1.30253 1.95829 1.68934 1.48266 1.40972 1.19172 0.93008 1.11920 1.00405 1.22668 0.93923 1.00733 0.92498 0.90332 0.90259 0.95216 0.87984 0.94190 0.92361 0.87238 0.88751 0.91234 0.76677 0.82095 0.82945 0.85164 0.88494 0.93457 0.87758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.60 127.69 1.23 1.48 16 2 N -0.56 -8.07 4.99 -921.18 -4.59 -12.67 16 3 C 0.02 0.27 5.67 86.30 0.49 0.76 16 4 C 0.06 0.95 7.01 72.01 0.50 1.45 16 5 O -0.40 -8.93 10.42 -148.98 -1.55 -10.48 16 6 C 0.09 1.64 2.84 30.63 0.09 1.73 16 7 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 8 C 0.14 2.82 4.54 86.38 0.39 3.21 16 9 N -0.73 -21.57 5.60 -338.95 -1.90 -23.47 16 10 C 0.20 7.54 6.67 39.17 0.26 7.81 16 11 C -0.14 -4.75 9.21 22.18 0.20 -4.54 16 12 C -0.06 -2.26 8.62 22.58 0.19 -2.06 16 13 C 0.01 0.66 5.52 -21.24 -0.12 0.55 16 14 C -0.25 -12.41 7.83 24.76 0.19 -12.22 16 15 H 0.11 5.90 5.88 -2.91 -0.02 5.88 16 16 C 0.02 0.76 5.42 87.22 0.47 1.24 16 17 N -0.69 -24.80 11.29 23.22 0.26 -24.54 16 18 Si 1.00 29.64 29.65 68.60 2.03 31.67 16 19 H -0.26 -8.39 7.11 99.48 0.71 -7.68 16 20 H -0.22 -5.19 7.11 99.48 0.71 -4.48 16 21 H -0.26 -7.97 7.11 99.48 0.71 -7.27 16 22 C -0.03 -1.69 6.89 36.68 0.25 -1.43 16 23 N 0.02 1.21 4.98 -45.76 -0.23 0.98 16 24 O -0.50 -36.10 19.14 3.50 0.07 -36.04 16 25 O -0.42 -28.92 16.26 3.50 0.06 -28.86 16 26 C -0.22 -10.88 9.35 22.17 0.21 -10.67 16 27 C 0.03 0.45 4.95 86.31 0.43 0.88 16 28 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.03 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 32 H 0.04 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.09 1.61 7.90 -2.39 -0.02 1.59 16 36 H 0.07 1.43 7.92 -2.39 -0.02 1.41 16 37 H 0.40 12.01 8.46 -92.71 -0.78 11.23 16 38 H 0.16 3.90 6.66 -2.92 -0.02 3.88 16 39 H 0.15 5.29 6.67 -2.91 -0.02 5.27 16 40 H 0.33 9.53 8.27 -92.71 -0.77 8.76 16 41 H 0.10 5.13 7.55 -2.91 -0.02 5.10 16 42 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -81.89 358.47 -0.80 -82.68 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: 0.26 Total: 32.56 kcal Atomic # 6 Polarization: -16.63 SS G_CDS: 4.80 Total: -11.84 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: -6.46 Total: -59.70 kcal Atomic # 8 Polarization: -73.95 SS G_CDS: -1.43 Total: -75.38 kcal Atomic # 14 Polarization: 29.64 SS G_CDS: 2.03 Total: 31.67 kcal Total: -81.89 -0.80 -82.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162688457.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.413 kcal (2) G-P(sol) polarization free energy of solvation -81.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds