Wall clock time and date at job start Tue Mar 31 2020 13:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47009 * 110.99887 * 2 1 4 4 C 1.53101 * 109.25658 * 182.39334 * 3 2 1 5 5 O 1.43007 * 109.25822 * 303.15152 * 4 3 2 6 6 C 1.43020 * 113.73964 * 58.67132 * 5 4 3 7 7 H 1.09001 * 109.50741 * 61.26419 * 6 5 4 8 8 C 1.52997 * 109.50624 * 181.35206 * 6 5 4 9 9 N 1.46497 * 109.47080 * 299.90695 * 8 6 5 10 10 C 1.37663 * 120.00227 * 180.02562 * 9 8 6 11 11 C 1.40186 * 119.80733 * 359.72925 * 10 9 8 12 12 C 1.35795 * 120.18820 * 179.75458 * 11 10 9 13 13 C 1.41754 * 119.80453 * 0.52211 * 12 11 10 14 14 C 1.39522 * 120.18573 * 179.75927 * 13 12 11 15 15 H 1.07996 * 119.99697 * 144.13666 * 14 13 12 16 16 C 1.46589 * 119.99685 * 324.14043 * 14 13 12 17 17 N 1.29497 * 119.99734 * 170.70967 * 16 14 13 18 18 Si 1.86803 * 120.00329 * 350.71308 * 16 14 13 19 19 H 1.48499 * 109.47114 * 88.55104 * 18 16 14 20 20 H 1.48500 * 109.47024 * 208.55039 * 18 16 14 21 21 H 1.48497 * 109.46987 * 328.55141 * 18 16 14 22 22 C 1.41712 * 119.63144 * 359.73156 * 13 12 11 23 23 N 1.48013 * 120.09916 * 180.02562 * 22 13 12 24 24 O 1.31701 * 119.99826 * 173.80274 * 23 22 13 25 25 O 1.31696 * 120.00074 * 353.80312 * 23 22 13 26 26 C 1.35835 * 119.80368 * 0.02562 * 22 13 12 27 27 C 1.47007 * 111.00075 * 123.63942 * 2 1 3 28 28 H 1.09000 * 109.47481 * 63.95459 * 1 2 3 29 29 H 1.09001 * 109.47230 * 183.95240 * 1 2 3 30 30 H 1.09004 * 109.46990 * 303.95418 * 1 2 3 31 31 H 1.08997 * 109.50815 * 62.46094 * 3 2 1 32 32 H 1.09006 * 109.50968 * 302.32505 * 3 2 1 33 33 H 1.09000 * 109.50273 * 183.21606 * 4 3 2 34 34 H 1.09005 * 109.50376 * 63.08962 * 4 3 2 35 35 H 1.08991 * 109.47404 * 59.91221 * 8 6 5 36 36 H 1.09001 * 109.46793 * 179.91294 * 8 6 5 37 37 H 0.97002 * 120.00568 * 0.02562 * 9 8 6 38 38 H 1.08006 * 119.90345 * 0.02562 * 11 10 9 39 39 H 1.08002 * 120.10053 * 180.23131 * 12 11 10 40 40 H 0.96996 * 119.99770 * 179.97438 * 17 16 14 41 41 H 1.08001 * 119.90385 * 179.97438 * 26 22 13 42 42 H 1.08998 * 109.50811 * 57.67021 * 27 2 1 43 43 H 1.09006 * 109.50593 * 297.54228 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3264 -0.0604 5 8 4.0174 0.5574 1.0402 6 6 3.5249 -0.7850 1.0708 7 1 3.8385 -1.3085 0.1676 8 6 4.0834 -1.5062 2.2992 9 7 5.5466 -1.5267 2.2301 10 6 6.2746 -2.1269 3.2325 11 6 5.6119 -2.7123 4.3204 12 6 6.3223 -3.3108 5.3109 13 6 7.7382 -3.3328 5.2481 14 6 8.4761 -3.9412 6.2640 15 1 9.3850 -4.4739 6.0264 16 6 8.0176 -3.8573 7.6538 17 7 8.5957 -4.5665 8.5703 18 14 6.5993 -2.7276 8.1030 19 1 5.3163 -3.4599 7.9526 20 1 6.7509 -2.2784 9.5103 21 1 6.6034 -1.5463 7.2031 22 6 8.4002 -2.7340 4.1475 23 7 9.8782 -2.7515 4.0712 24 8 10.4872 -2.3046 2.9923 25 8 10.5844 -3.2139 5.0820 26 6 7.6742 -2.1439 3.1627 27 6 1.9958 -0.7603 1.1426 28 1 -0.3634 0.4512 -0.9233 29 1 -0.3634 -1.0252 0.0708 30 1 -0.3633 0.5740 0.8525 31 1 1.6828 1.8825 0.9110 32 1 1.6133 1.9092 -0.8682 33 1 3.9221 2.3398 -0.0030 34 1 3.8384 0.8643 -0.9965 35 1 3.7695 -0.9823 3.2020 36 1 3.7064 -2.5286 2.3228 37 1 6.0025 -1.1174 1.4781 38 1 4.5332 -2.6910 4.3685 39 1 5.8101 -3.7646 6.1465 40 1 8.2925 -4.5108 9.4899 41 1 8.1770 -1.6866 2.3233 42 1 1.6133 -1.7804 1.1085 43 1 1.6827 -0.2843 2.0719 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162688458.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:02 Heat of formation + Delta-G solvation = 8.977448 kcal Electronic energy + Delta-G solvation = -26820.791758 eV Core-core repulsion = 22870.264934 eV Total energy + Delta-G solvation = -3950.526824 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.05733 -38.87036 -36.81287 -36.07847 -35.30587 -33.99371 -32.49879 -32.06817 -30.56496 -29.83335 -29.12341 -26.82936 -25.13784 -24.47432 -23.79292 -22.60384 -21.81641 -20.72446 -19.99207 -18.27026 -17.33799 -16.83313 -16.59832 -16.30918 -15.84826 -15.64092 -15.49080 -15.24002 -14.80844 -14.55093 -14.23329 -14.04834 -13.95686 -13.60156 -13.44223 -13.13029 -12.81939 -12.74184 -12.62557 -12.37311 -12.17119 -11.69238 -11.47258 -11.45000 -11.36769 -10.92279 -10.81090 -10.74012 -10.33043 -9.94013 -9.87887 -9.40051 -9.28885 -8.98090 -8.87689 -8.84783 -8.42377 -7.64041 -7.03930 -4.77906 0.94237 2.32327 2.62955 2.70814 2.88252 2.90996 3.16258 3.32672 3.46966 3.48040 3.95597 3.96774 4.54395 4.56824 4.62322 4.77122 4.79087 4.85341 5.00247 5.05025 5.11716 5.23766 5.34110 5.37812 5.42033 5.49357 5.53947 5.60702 5.67362 5.80996 5.98222 6.20112 6.30798 6.46838 6.47836 6.53100 6.72842 6.90496 6.93933 7.10892 7.25403 7.46645 7.74893 7.92230 8.10063 8.20757 8.35981 8.88175 9.24410 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016791 B = 0.003131 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.186465 B = 8939.697175 C =10183.829570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.016 3.984 4 C 0.063 3.937 5 O -0.372 6.372 6 C 0.084 3.916 7 H 0.074 0.926 8 C 0.144 3.856 9 N -0.743 5.743 10 C 0.110 3.890 11 C -0.108 4.108 12 C -0.158 4.158 13 C 0.046 3.954 14 C -0.303 4.303 15 H 0.134 0.866 16 C 0.063 3.937 17 N -0.714 5.714 18 Si 0.921 3.079 19 H -0.255 1.255 20 H -0.276 1.276 21 H -0.234 1.234 22 C -0.060 4.060 23 N 0.035 4.965 24 O -0.362 6.362 25 O -0.277 6.277 26 C -0.108 4.108 27 C 0.025 3.975 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.027 0.973 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.099 0.901 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.068 0.932 37 H 0.397 0.603 38 H 0.112 0.888 39 H 0.121 0.879 40 H 0.307 0.693 41 H 0.121 0.879 42 H 0.089 0.911 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.737 7.281 -8.601 23.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.267 5.267 3 C -0.112 4.112 4 C -0.014 4.014 5 O -0.291 6.291 6 C 0.026 3.974 7 H 0.091 0.909 8 C 0.018 3.982 9 N -0.378 5.378 10 C 0.009 3.991 11 C -0.129 4.129 12 C -0.178 4.178 13 C 0.040 3.960 14 C -0.330 4.330 15 H 0.151 0.849 16 C -0.170 4.170 17 N -0.334 5.334 18 Si 0.743 3.257 19 H -0.181 1.181 20 H -0.202 1.202 21 H -0.157 1.157 22 C -0.163 4.163 23 N 0.450 4.550 24 O -0.502 6.502 25 O -0.436 6.436 26 C -0.133 4.133 27 C -0.104 4.104 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.104 0.896 33 H 0.117 0.883 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.231 0.769 38 H 0.130 0.870 39 H 0.138 0.862 40 H 0.119 0.881 41 H 0.139 0.861 42 H 0.108 0.892 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -20.708 7.034 -8.709 23.540 hybrid contribution -0.520 0.816 0.531 1.104 sum -21.228 7.850 -8.179 24.065 Atomic orbital electron populations 1.22389 0.86685 1.02247 1.01033 1.62182 1.08348 1.13728 1.42471 1.22838 0.96916 0.89723 1.01741 1.22658 0.91817 0.96685 0.90280 1.88096 1.69686 1.23202 1.48092 1.22382 0.91827 0.83996 0.99236 0.90852 1.21103 0.82413 0.98578 0.96128 1.43381 1.03306 1.65775 1.25345 1.16964 0.89216 1.01655 0.91309 1.20368 0.98521 0.99625 0.94424 1.20873 0.92808 1.04200 0.99941 1.17144 0.91541 0.94116 0.93200 1.21955 1.07003 1.15456 0.88633 0.84903 1.28173 0.97469 0.95231 0.96135 1.68932 1.33182 1.27133 1.04200 0.86159 0.78967 0.81855 0.78694 1.18065 1.20166 1.15687 1.19222 0.76230 1.16656 1.04188 1.49627 1.03875 1.00586 1.00886 1.96055 1.74380 1.60280 1.19520 1.96082 1.66849 1.54473 1.26166 1.19432 0.91327 1.03085 0.99445 1.22734 0.95592 0.99703 0.92338 0.91105 0.91068 0.95403 0.93830 0.89641 0.88274 0.92202 0.92332 0.91380 0.76867 0.87009 0.86189 0.88066 0.86129 0.89233 0.93497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.63 60.06 0.58 0.74 16 2 N -0.54 -4.55 4.98 -242.60 -1.21 -5.76 16 3 C 0.02 0.12 5.66 -3.71 -0.02 0.10 16 4 C 0.06 0.55 7.01 37.21 0.26 0.81 16 5 O -0.37 -4.34 10.22 -35.23 -0.36 -4.70 16 6 C 0.08 0.86 2.89 -26.68 -0.08 0.79 16 7 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 8 C 0.14 1.69 4.57 -4.04 -0.02 1.67 16 9 N -0.74 -11.19 5.55 -58.49 -0.32 -11.51 16 10 C 0.11 2.07 6.67 -83.80 -0.56 1.51 16 11 C -0.11 -1.96 9.21 -39.73 -0.37 -2.32 16 12 C -0.16 -3.22 7.12 -39.11 -0.28 -3.50 16 13 C 0.05 1.10 5.11 -106.75 -0.55 0.56 16 14 C -0.30 -7.64 8.37 -35.74 -0.30 -7.94 16 15 H 0.13 3.75 6.04 -52.49 -0.32 3.43 16 16 C 0.06 1.41 5.65 -15.17 -0.09 1.32 16 17 N -0.71 -16.05 13.89 55.99 0.78 -15.27 16 18 Si 0.92 17.15 24.62 -169.99 -4.19 12.97 16 19 H -0.26 -4.29 6.64 56.52 0.38 -3.92 16 20 H -0.28 -4.89 7.11 56.52 0.40 -4.48 16 21 H -0.23 -4.64 6.90 56.52 0.39 -4.25 16 22 C -0.06 -1.53 6.89 -79.49 -0.55 -2.08 16 23 N 0.03 1.00 4.98 34.19 0.17 1.17 16 24 O -0.36 -10.67 19.14 -31.57 -0.60 -11.27 16 25 O -0.28 -8.34 16.28 -31.57 -0.51 -8.85 16 26 C -0.11 -2.39 9.35 -39.73 -0.37 -2.77 16 27 C 0.03 0.22 4.94 -3.72 -0.02 0.20 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 30 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.71 7.90 -51.93 -0.41 0.30 16 36 H 0.07 0.72 7.92 -51.93 -0.41 0.31 16 37 H 0.40 5.79 8.34 -40.82 -0.34 5.45 16 38 H 0.11 1.63 6.66 -52.48 -0.35 1.28 16 39 H 0.12 2.23 4.85 -52.49 -0.25 1.98 16 40 H 0.31 5.90 8.27 -40.82 -0.34 5.57 16 41 H 0.12 2.65 7.55 -52.49 -0.40 2.25 16 42 H 0.09 0.66 8.11 -51.93 -0.42 0.24 16 43 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 352.21 15.07 5.31 5.31 Total: -1.00 -31.04 352.21 -9.16 -40.20 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -5.87 Total: 8.63 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -2.35 Total: -10.92 kcal Atomic # 7 Polarization: -30.78 SS G_CDS: -0.59 Total: -31.37 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -1.48 Total: -24.82 kcal Atomic # 14 Polarization: 17.15 SS G_CDS: -4.19 Total: 12.97 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.04 -9.16 -40.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162688458.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.182 kcal (2) G-P(sol) polarization free energy of solvation -31.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds