Wall clock time and date at job start Tue Mar 31 2020 13:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47009 * 110.99887 * 2 1 4 4 C 1.53101 * 109.25658 * 182.39334 * 3 2 1 5 5 O 1.43007 * 109.25822 * 303.15152 * 4 3 2 6 6 C 1.43020 * 113.73964 * 58.67132 * 5 4 3 7 7 H 1.09001 * 109.50741 * 61.26419 * 6 5 4 8 8 C 1.52997 * 109.50624 * 181.35206 * 6 5 4 9 9 N 1.46497 * 109.47080 * 299.90695 * 8 6 5 10 10 C 1.37663 * 120.00227 * 180.02562 * 9 8 6 11 11 C 1.40186 * 119.80733 * 359.72925 * 10 9 8 12 12 C 1.35795 * 120.18820 * 179.75458 * 11 10 9 13 13 C 1.41754 * 119.80453 * 0.52211 * 12 11 10 14 14 C 1.39522 * 120.18573 * 179.75927 * 13 12 11 15 15 H 1.07996 * 119.99697 * 144.13666 * 14 13 12 16 16 C 1.46589 * 119.99685 * 324.14043 * 14 13 12 17 17 N 1.29497 * 119.99734 * 170.70967 * 16 14 13 18 18 Si 1.86803 * 120.00329 * 350.71308 * 16 14 13 19 19 H 1.48499 * 109.47114 * 88.55104 * 18 16 14 20 20 H 1.48500 * 109.47024 * 208.55039 * 18 16 14 21 21 H 1.48497 * 109.46987 * 328.55141 * 18 16 14 22 22 C 1.41712 * 119.63144 * 359.73156 * 13 12 11 23 23 N 1.48013 * 120.09916 * 180.02562 * 22 13 12 24 24 O 1.31701 * 119.99826 * 173.80274 * 23 22 13 25 25 O 1.31696 * 120.00074 * 353.80312 * 23 22 13 26 26 C 1.35835 * 119.80368 * 0.02562 * 22 13 12 27 27 C 1.47007 * 111.00075 * 123.63942 * 2 1 3 28 28 H 1.09000 * 109.47481 * 63.95459 * 1 2 3 29 29 H 1.09001 * 109.47230 * 183.95240 * 1 2 3 30 30 H 1.09004 * 109.46990 * 303.95418 * 1 2 3 31 31 H 1.08997 * 109.50815 * 62.46094 * 3 2 1 32 32 H 1.09006 * 109.50968 * 302.32505 * 3 2 1 33 33 H 1.09000 * 109.50273 * 183.21606 * 4 3 2 34 34 H 1.09005 * 109.50376 * 63.08962 * 4 3 2 35 35 H 1.08991 * 109.47404 * 59.91221 * 8 6 5 36 36 H 1.09001 * 109.46793 * 179.91294 * 8 6 5 37 37 H 0.97002 * 120.00568 * 0.02562 * 9 8 6 38 38 H 1.08006 * 119.90345 * 0.02562 * 11 10 9 39 39 H 1.08002 * 120.10053 * 180.23131 * 12 11 10 40 40 H 0.96996 * 119.99770 * 179.97438 * 17 16 14 41 41 H 1.08001 * 119.90385 * 179.97438 * 26 22 13 42 42 H 1.08998 * 109.50811 * 57.67021 * 27 2 1 43 43 H 1.09006 * 109.50593 * 297.54228 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9958 1.3725 0.0000 4 6 3.5249 1.3264 -0.0604 5 8 4.0174 0.5574 1.0402 6 6 3.5249 -0.7850 1.0708 7 1 3.8385 -1.3085 0.1676 8 6 4.0834 -1.5062 2.2992 9 7 5.5466 -1.5267 2.2301 10 6 6.2746 -2.1269 3.2325 11 6 5.6119 -2.7123 4.3204 12 6 6.3223 -3.3108 5.3109 13 6 7.7382 -3.3328 5.2481 14 6 8.4761 -3.9412 6.2640 15 1 9.3850 -4.4739 6.0264 16 6 8.0176 -3.8573 7.6538 17 7 8.5957 -4.5665 8.5703 18 14 6.5993 -2.7276 8.1030 19 1 5.3163 -3.4599 7.9526 20 1 6.7509 -2.2784 9.5103 21 1 6.6034 -1.5463 7.2031 22 6 8.4002 -2.7340 4.1475 23 7 9.8782 -2.7515 4.0712 24 8 10.4872 -2.3046 2.9923 25 8 10.5844 -3.2139 5.0820 26 6 7.6742 -2.1439 3.1627 27 6 1.9958 -0.7603 1.1426 28 1 -0.3634 0.4512 -0.9233 29 1 -0.3634 -1.0252 0.0708 30 1 -0.3633 0.5740 0.8525 31 1 1.6828 1.8825 0.9110 32 1 1.6133 1.9092 -0.8682 33 1 3.9221 2.3398 -0.0030 34 1 3.8384 0.8643 -0.9965 35 1 3.7695 -0.9823 3.2020 36 1 3.7064 -2.5286 2.3228 37 1 6.0025 -1.1174 1.4781 38 1 4.5332 -2.6910 4.3685 39 1 5.8101 -3.7646 6.1465 40 1 8.2925 -4.5108 9.4899 41 1 8.1770 -1.6866 2.3233 42 1 1.6133 -1.7804 1.1085 43 1 1.6827 -0.2843 2.0719 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162688458.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:01 Heat of formation + Delta-G solvation = -15.832370 kcal Electronic energy + Delta-G solvation = -26821.867593 eV Core-core repulsion = 22870.264934 eV Total energy + Delta-G solvation = -3951.602658 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.90669 -40.41372 -38.34549 -37.16735 -36.56405 -35.69220 -34.21191 -33.24468 -32.20946 -31.27828 -29.87315 -28.14458 -26.50819 -25.58751 -25.02204 -23.84365 -23.20688 -21.58075 -21.40332 -20.16473 -18.83005 -18.13663 -17.58595 -17.43900 -17.32426 -16.76870 -16.54641 -16.08819 -15.97829 -15.85237 -15.68831 -15.51547 -14.99236 -14.84139 -14.68193 -14.58732 -14.30730 -13.87003 -13.38888 -13.23436 -13.12515 -12.90748 -12.83583 -12.69252 -12.48372 -12.27640 -12.06568 -11.90383 -11.53103 -11.43435 -11.19034 -11.00925 -10.93059 -10.70760 -10.64029 -10.14022 -9.49523 -9.41465 -8.64144 -6.72519 -1.04757 0.65032 0.91965 1.18015 1.38168 1.49534 1.55801 1.95130 2.23190 2.47572 2.77891 2.94375 2.99211 3.79367 3.89662 3.91441 3.98670 4.09679 4.11794 4.18163 4.23179 4.35532 4.45809 4.53078 4.59018 4.62375 4.66227 4.66964 4.70373 4.83125 4.87857 4.94795 5.01494 5.03620 5.07378 5.24836 5.35828 5.39952 5.64283 5.88946 5.90941 5.95833 6.00375 6.18998 6.31301 6.58929 6.85410 7.09680 7.43421 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016791 B = 0.003131 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.186465 B = 8939.697175 C =10183.829570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.556 5.556 3 C 0.020 3.980 4 C 0.058 3.942 5 O -0.398 6.398 6 C 0.085 3.915 7 H 0.070 0.930 8 C 0.132 3.868 9 N -0.726 5.726 10 C 0.189 3.811 11 C -0.105 4.105 12 C -0.125 4.125 13 C 0.000 4.000 14 C -0.243 4.243 15 H 0.088 0.912 16 C 0.016 3.984 17 N -0.713 5.713 18 Si 0.974 3.026 19 H -0.194 1.194 20 H -0.254 1.254 21 H -0.249 1.249 22 C -0.027 4.027 23 N 0.017 4.983 24 O -0.489 6.489 25 O -0.421 6.421 26 C -0.196 4.196 27 C 0.029 3.971 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.029 0.971 31 H 0.039 0.961 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.058 0.942 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.401 0.599 38 H 0.177 0.823 39 H 0.159 0.841 40 H 0.334 0.666 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.539 7.238 -6.111 31.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.281 5.281 3 C -0.109 4.109 4 C -0.018 4.018 5 O -0.317 6.317 6 C 0.027 3.973 7 H 0.088 0.912 8 C 0.008 3.992 9 N -0.358 5.358 10 C 0.081 3.919 11 C -0.125 4.125 12 C -0.144 4.144 13 C -0.005 4.005 14 C -0.274 4.274 15 H 0.105 0.895 16 C -0.215 4.215 17 N -0.334 5.334 18 Si 0.789 3.211 19 H -0.116 1.116 20 H -0.179 1.179 21 H -0.172 1.172 22 C -0.142 4.142 23 N 0.381 4.619 24 O -0.596 6.596 25 O -0.540 6.540 26 C -0.224 4.224 27 C -0.099 4.099 28 H 0.096 0.904 29 H 0.098 0.902 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.118 0.882 33 H 0.126 0.874 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.118 0.882 37 H 0.235 0.765 38 H 0.194 0.806 39 H 0.177 0.823 40 H 0.148 0.852 41 H 0.121 0.879 42 H 0.125 0.875 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -29.148 6.978 -6.297 30.625 hybrid contribution 1.309 0.634 0.189 1.467 sum -27.839 7.612 -6.108 29.500 Atomic orbital electron populations 1.22432 0.85423 1.02932 1.01503 1.62198 1.09530 1.13846 1.42492 1.22813 0.96017 0.89822 1.02207 1.22799 0.92732 0.96833 0.89458 1.88051 1.70540 1.23961 1.49196 1.22365 0.93123 0.83420 0.98392 0.91216 1.21546 0.79223 1.00893 0.97549 1.43851 1.05435 1.62680 1.23832 1.17294 0.87937 0.95879 0.90800 1.20975 1.01467 0.97544 0.92497 1.21280 0.90140 1.01846 1.01136 1.17552 0.94066 0.95824 0.93095 1.22482 1.04180 1.09289 0.91484 0.89452 1.29298 1.00845 0.97405 0.93985 1.68862 1.32511 1.26249 1.05801 0.85456 0.77168 0.79145 0.79356 1.11573 1.17894 1.17225 1.19879 0.75498 1.14556 1.04218 1.49462 1.04332 1.07102 1.01052 1.95900 1.75458 1.66992 1.21294 1.95922 1.68246 1.61869 1.28010 1.19288 0.92942 1.09348 1.00783 1.22693 0.94015 1.00758 0.92459 0.90423 0.90236 0.95239 0.94248 0.88205 0.87385 0.92334 0.90888 0.88184 0.76479 0.80622 0.82347 0.85156 0.87868 0.87544 0.93467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.63 127.69 1.23 1.45 16 2 N -0.56 -7.17 4.98 -921.45 -4.59 -11.76 16 3 C 0.02 0.24 5.66 86.32 0.49 0.73 16 4 C 0.06 0.88 7.01 72.02 0.50 1.38 16 5 O -0.40 -8.05 10.22 -148.98 -1.52 -9.57 16 6 C 0.09 1.38 2.89 30.63 0.09 1.46 16 7 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 8 C 0.13 2.24 4.57 86.38 0.39 2.63 16 9 N -0.73 -18.85 5.55 -338.97 -1.88 -20.73 16 10 C 0.19 6.45 6.67 39.16 0.26 6.71 16 11 C -0.10 -3.02 9.21 22.18 0.20 -2.81 16 12 C -0.12 -4.31 7.12 22.57 0.16 -4.15 16 13 C 0.00 0.01 5.11 -21.24 -0.11 -0.10 16 14 C -0.24 -12.51 8.37 24.76 0.21 -12.30 16 15 H 0.09 5.38 6.04 -2.91 -0.02 5.36 16 16 C 0.02 0.69 5.65 87.22 0.49 1.18 16 17 N -0.71 -30.01 13.89 23.22 0.32 -29.69 16 18 Si 0.97 28.91 24.62 68.60 1.69 30.59 16 19 H -0.19 -4.12 6.64 99.48 0.66 -3.46 16 20 H -0.25 -6.93 7.11 99.48 0.71 -6.22 16 21 H -0.25 -8.20 6.90 99.48 0.69 -7.52 16 22 C -0.03 -1.49 6.89 36.68 0.25 -1.24 16 23 N 0.02 1.16 4.98 -45.75 -0.23 0.93 16 24 O -0.49 -34.57 19.14 3.51 0.07 -34.50 16 25 O -0.42 -29.88 16.28 3.52 0.06 -29.82 16 26 C -0.20 -9.16 9.35 22.17 0.21 -8.95 16 27 C 0.03 0.36 4.94 86.31 0.43 0.79 16 28 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.08 0.57 8.08 -2.39 -0.02 0.55 16 30 H 0.03 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.04 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.07 1.18 7.90 -2.39 -0.02 1.16 16 36 H 0.10 1.24 7.92 -2.39 -0.02 1.22 16 37 H 0.40 10.77 8.34 -92.71 -0.77 10.00 16 38 H 0.18 3.11 6.66 -2.91 -0.02 3.09 16 39 H 0.16 4.35 4.85 -2.91 -0.01 4.34 16 40 H 0.33 11.34 8.27 -92.71 -0.77 10.57 16 41 H 0.10 5.10 7.55 -2.91 -0.02 5.08 16 42 H 0.11 0.95 8.11 -2.39 -0.02 0.93 16 43 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 Total: -1.00 -85.40 352.21 -1.07 -86.47 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: 0.21 Total: 31.28 kcal Atomic # 6 Polarization: -18.01 SS G_CDS: 4.81 Total: -13.20 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -6.38 Total: -61.24 kcal Atomic # 8 Polarization: -72.50 SS G_CDS: -1.40 Total: -73.89 kcal Atomic # 14 Polarization: 28.91 SS G_CDS: 1.69 Total: 30.59 kcal Total: -85.40 -1.07 -86.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162688458.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.636 kcal (2) G-P(sol) polarization free energy of solvation -85.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds