Wall clock time and date at job start Tue Mar 31 2020 13:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47011 * 111.00457 * 2 1 4 4 C 1.53097 * 109.25987 * 177.60623 * 3 2 1 5 5 O 1.43018 * 109.25861 * 56.85114 * 4 3 2 6 6 C 1.43016 * 113.73509 * 301.32844 * 5 4 3 7 7 H 1.09004 * 109.50658 * 298.68958 * 6 5 4 8 8 C 1.53003 * 109.50736 * 178.60577 * 6 5 4 9 9 N 1.46503 * 109.46952 * 65.08370 * 8 6 5 10 10 C 1.39666 * 120.00114 * 180.02562 * 9 8 6 11 11 C 1.38168 * 119.98824 * 6.88182 * 10 9 8 12 12 C 1.41140 * 119.50681 * 180.02562 * 11 10 9 13 13 C 1.40356 * 120.25304 * 179.97438 * 12 11 10 14 14 H 1.07992 * 119.99909 * 22.73470 * 13 12 11 15 15 C 1.46527 * 119.99772 * 202.73010 * 13 12 11 16 16 N 1.29516 * 119.99667 * 15.79561 * 15 13 12 17 17 Si 1.86798 * 119.99828 * 195.79045 * 15 13 12 18 18 H 1.48496 * 109.47246 * 60.00584 * 17 15 13 19 19 H 1.48499 * 109.46833 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47270 * 300.00180 * 17 15 13 21 21 C 1.41342 * 119.48895 * 359.97438 * 12 11 10 22 22 C 1.36484 * 119.96784 * 359.97438 * 21 12 11 23 23 C 1.38665 * 120.49593 * 0.02562 * 22 21 12 24 24 N 1.48021 * 119.73559 * 179.97438 * 23 22 21 25 25 O 1.31701 * 120.00209 * 354.21267 * 24 23 22 26 26 O 1.31701 * 119.99781 * 174.20949 * 24 23 22 27 27 C 1.47021 * 110.99752 * 236.31405 * 2 1 3 28 28 H 1.09001 * 109.46708 * 56.04656 * 1 2 3 29 29 H 1.08999 * 109.47187 * 176.04645 * 1 2 3 30 30 H 1.08995 * 109.47253 * 296.04747 * 1 2 3 31 31 H 1.08999 * 109.50791 * 57.66631 * 3 2 1 32 32 H 1.09007 * 109.50343 * 297.53954 * 3 2 1 33 33 H 1.08993 * 109.50584 * 296.91420 * 4 3 2 34 34 H 1.08998 * 109.53818 * 176.80300 * 4 3 2 35 35 H 1.09002 * 109.46698 * 305.08987 * 8 6 5 36 36 H 1.08999 * 109.47131 * 185.08262 * 8 6 5 37 37 H 0.97000 * 119.99791 * 0.02562 * 9 8 6 38 38 H 1.07997 * 120.25208 * 0.04121 * 11 10 9 39 39 H 0.97003 * 119.99090 * 179.97438 * 16 15 13 40 40 H 1.08003 * 120.01458 * 180.24932 * 21 12 11 41 41 H 1.08000 * 119.75224 * 179.97438 * 22 21 12 42 42 H 1.09005 * 109.46705 * 62.44364 * 27 2 1 43 43 H 1.08995 * 109.54678 * 302.31235 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3724 0.0000 4 6 3.5250 1.3263 0.0604 5 8 4.0176 0.5573 -1.0403 6 6 3.5249 -0.7850 -1.0709 7 1 3.8392 -1.3087 -0.1680 8 6 4.0825 -1.5060 -2.2999 9 7 5.5367 -1.6319 -2.1742 10 6 6.2730 -2.2592 -3.1817 11 6 5.6536 -2.6335 -4.3587 12 6 6.4073 -3.2673 -5.3698 13 6 5.7938 -3.6546 -6.5713 14 1 4.8828 -3.1719 -6.8926 15 6 6.3896 -4.7140 -7.3897 16 7 7.2870 -5.4975 -6.8815 17 14 5.8546 -4.9346 -9.1658 18 1 6.1386 -3.6913 -9.9264 19 1 6.6012 -6.0668 -9.7706 20 1 4.3983 -5.2215 -9.2121 21 6 7.7845 -3.5088 -5.1631 22 6 8.3750 -3.1292 -3.9926 23 6 7.6336 -2.5066 -2.9999 24 7 8.2912 -2.1024 -1.7368 25 8 9.5454 -2.4349 -1.5116 26 8 7.6218 -1.4103 -0.8382 27 6 1.9958 -0.7613 -1.1421 28 1 -0.3633 0.5740 -0.8525 29 1 -0.3633 -1.0252 -0.0709 30 1 -0.3633 0.4512 0.9232 31 1 1.6134 1.9092 0.8681 32 1 1.6829 1.8825 -0.9111 33 1 3.8385 0.8642 0.9964 34 1 3.9228 2.3395 0.0034 35 1 3.8434 -0.9338 -3.1963 36 1 3.6368 -2.4981 -2.3724 37 1 5.9881 -1.2795 -1.3913 38 1 4.6006 -2.4425 -4.5040 39 1 7.6811 -6.1990 -7.4233 40 1 8.3701 -3.9895 -5.9327 41 1 9.4275 -3.3158 -3.8382 42 1 1.6821 -0.2857 -2.0714 43 1 1.6139 -1.7816 -1.1076 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162689484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:05 Heat of formation + Delta-G solvation = -2.735340 kcal Electronic energy + Delta-G solvation = -27084.922413 eV Core-core repulsion = 23133.887685 eV Total energy + Delta-G solvation = -3951.034728 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.82768 -38.77498 -36.73535 -36.04978 -35.30637 -34.04141 -32.85892 -31.72196 -30.72707 -29.20924 -28.30003 -26.85222 -25.80390 -24.25759 -23.63631 -22.54385 -21.09235 -20.54467 -20.34767 -18.20569 -17.08721 -16.71125 -16.56692 -16.33244 -15.87974 -15.66236 -15.39932 -15.08678 -14.86502 -14.52647 -14.24826 -13.86630 -13.59949 -13.34359 -13.11970 -13.02900 -12.56968 -12.50259 -12.38184 -12.13653 -11.88811 -11.66174 -11.54202 -11.43692 -11.20223 -11.07880 -10.75099 -10.55412 -10.10181 -9.92648 -9.75633 -9.67264 -9.46794 -9.42230 -9.21673 -8.65317 -8.27736 -7.65801 -6.79134 -5.14959 0.89213 2.40366 2.62830 2.66996 2.82983 2.90348 2.91852 3.31918 3.50088 3.71601 3.89383 4.08524 4.73895 4.78123 4.83918 4.99750 5.06679 5.07337 5.21543 5.23732 5.30901 5.46446 5.55317 5.56968 5.60384 5.72877 5.74038 5.90342 6.04610 6.07665 6.32139 6.39793 6.53409 6.60899 6.66534 6.67532 6.89654 7.15903 7.17774 7.28964 7.35319 7.56547 7.73007 7.96211 8.09460 8.34609 8.40240 8.72255 9.17999 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011967 B = 0.003558 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.167682 B = 7866.975495 C = 9904.306234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.017 3.983 4 C 0.062 3.938 5 O -0.370 6.370 6 C 0.085 3.915 7 H 0.074 0.926 8 C 0.133 3.867 9 N -0.729 5.729 10 C 0.304 3.696 11 C -0.318 4.318 12 C 0.137 3.863 13 C -0.375 4.375 14 H 0.101 0.899 15 C 0.062 3.938 16 N -0.712 5.712 17 Si 0.932 3.068 18 H -0.252 1.252 19 H -0.269 1.269 20 H -0.254 1.254 21 C -0.169 4.169 22 C -0.041 4.041 23 C -0.147 4.147 24 N 0.058 4.942 25 O -0.314 6.314 26 O -0.341 6.341 27 C 0.027 3.973 28 H 0.027 0.973 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.043 0.957 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.066 0.934 36 H 0.073 0.927 37 H 0.417 0.583 38 H 0.114 0.886 39 H 0.305 0.695 40 H 0.135 0.865 41 H 0.120 0.880 42 H 0.047 0.953 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.077 4.570 0.748 13.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.111 4.111 4 C -0.015 4.015 5 O -0.289 6.289 6 C 0.026 3.974 7 H 0.092 0.908 8 C 0.007 3.993 9 N -0.377 5.377 10 C 0.195 3.805 11 C -0.345 4.345 12 C 0.133 3.867 13 C -0.400 4.400 14 H 0.119 0.881 15 C -0.170 4.170 16 N -0.331 5.331 17 Si 0.753 3.247 18 H -0.176 1.176 19 H -0.193 1.193 20 H -0.178 1.178 21 C -0.190 4.190 22 C -0.061 4.061 23 C -0.255 4.255 24 N 0.474 4.526 25 O -0.470 6.470 26 O -0.482 6.482 27 C -0.102 4.102 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.117 0.883 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.269 0.731 38 H 0.132 0.868 39 H 0.118 0.882 40 H 0.153 0.847 41 H 0.138 0.862 42 H 0.065 0.935 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.857 4.240 1.018 13.577 hybrid contribution -0.370 0.317 -0.534 0.723 sum -13.227 4.557 0.484 13.999 Atomic orbital electron populations 1.22379 0.86819 1.02177 1.00908 1.62160 1.08202 1.13745 1.42654 1.22838 0.97025 0.89659 1.01584 1.22647 0.91601 0.96693 0.90554 1.88110 1.69770 1.23108 1.47877 1.22355 0.91608 0.84096 0.99310 0.90846 1.21215 0.82848 0.98874 0.96341 1.45970 1.05320 1.62260 1.24135 1.17242 0.87121 0.87650 0.88535 1.20284 0.99252 1.21260 0.93742 1.17635 0.91273 0.86928 0.90914 1.21433 1.06781 1.10936 1.00852 0.88075 1.27875 0.92862 0.94046 1.02268 1.69107 1.15335 1.09343 1.39305 0.85939 0.80628 0.79850 0.78311 1.17586 1.19319 1.17805 1.21214 0.95050 1.05474 0.97309 1.20010 0.99053 0.95176 0.91879 1.19604 0.92099 1.26242 0.87530 1.49919 1.01821 0.98248 1.02637 1.96104 0.97240 1.66140 1.87507 1.95679 1.63566 1.46050 1.42882 1.22728 0.95580 0.99636 0.92241 0.95470 0.91118 0.91195 0.89720 0.93896 0.92151 0.88348 0.91624 0.90903 0.73098 0.86825 0.88226 0.84726 0.86219 0.93465 0.89221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.63 60.06 0.58 0.79 16 2 N -0.54 -5.88 4.98 -242.59 -1.21 -7.09 16 3 C 0.02 0.17 5.66 -3.71 -0.02 0.15 16 4 C 0.06 0.74 7.01 37.21 0.26 1.00 16 5 O -0.37 -5.78 10.42 -35.23 -0.37 -6.14 16 6 C 0.08 1.22 2.84 -26.68 -0.08 1.14 16 7 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 8 C 0.13 2.14 4.64 -4.04 -0.02 2.12 16 9 N -0.73 -15.11 5.56 -58.67 -0.33 -15.44 16 10 C 0.30 6.98 6.63 -83.85 -0.56 6.42 16 11 C -0.32 -6.93 9.08 -38.51 -0.35 -7.28 16 12 C 0.14 3.09 5.63 -106.82 -0.60 2.49 16 13 C -0.37 -7.72 9.32 -35.45 -0.33 -8.05 16 14 H 0.10 1.91 7.98 -52.49 -0.42 1.49 16 15 C 0.06 1.17 5.36 -15.19 -0.08 1.09 16 16 N -0.71 -14.08 10.86 55.98 0.61 -13.47 16 17 Si 0.93 13.80 29.67 -169.99 -5.04 8.76 16 18 H -0.25 -3.77 7.11 56.52 0.40 -3.37 16 19 H -0.27 -3.88 7.11 56.52 0.40 -3.48 16 20 H -0.25 -3.73 7.11 56.52 0.40 -3.33 16 21 C -0.17 -3.85 8.73 -39.03 -0.34 -4.19 16 22 C -0.04 -0.97 9.50 -40.06 -0.38 -1.35 16 23 C -0.15 -3.68 6.92 -79.32 -0.55 -4.23 16 24 N 0.06 1.56 4.98 34.27 0.17 1.73 16 25 O -0.31 -8.71 19.14 -31.57 -0.60 -9.31 16 26 O -0.34 -9.07 16.29 -31.57 -0.51 -9.59 16 27 C 0.03 0.31 4.94 -3.71 -0.02 0.29 16 28 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 29 H 0.07 0.54 8.08 -51.93 -0.42 0.12 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.07 1.04 7.68 -51.93 -0.40 0.65 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.42 9.30 4.68 -42.09 -0.20 9.10 16 38 H 0.11 2.23 6.71 -52.49 -0.35 1.87 16 39 H 0.30 5.24 8.27 -40.82 -0.34 4.91 16 40 H 0.14 2.98 5.98 -52.48 -0.31 2.67 16 41 H 0.12 2.72 7.56 -52.49 -0.40 2.32 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.91 8.11 -51.93 -0.42 0.49 16 LS Contribution 357.45 15.07 5.39 5.39 Total: -1.00 -28.58 357.45 -10.24 -38.82 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: -5.86 Total: 15.95 kcal Atomic # 6 Polarization: -7.12 SS G_CDS: -2.48 Total: -9.61 kcal Atomic # 7 Polarization: -33.51 SS G_CDS: -0.76 Total: -34.26 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -1.49 Total: -25.05 kcal Atomic # 14 Polarization: 13.80 SS G_CDS: -5.04 Total: 8.76 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -28.58 -10.24 -38.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162689484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.081 kcal (2) G-P(sol) polarization free energy of solvation -28.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds