Wall clock time and date at job start Tue Mar 31 2020 13:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.47011 * 111.00457 * 2 1 4 4 C 1.53097 * 109.25987 * 177.60623 * 3 2 1 5 5 O 1.43018 * 109.25861 * 56.85114 * 4 3 2 6 6 C 1.43016 * 113.73509 * 301.32844 * 5 4 3 7 7 H 1.09004 * 109.50658 * 298.68958 * 6 5 4 8 8 C 1.53003 * 109.50736 * 178.60577 * 6 5 4 9 9 N 1.46503 * 109.46952 * 65.08370 * 8 6 5 10 10 C 1.39666 * 120.00114 * 180.02562 * 9 8 6 11 11 C 1.38168 * 119.98824 * 6.88182 * 10 9 8 12 12 C 1.41140 * 119.50681 * 180.02562 * 11 10 9 13 13 C 1.40356 * 120.25304 * 179.97438 * 12 11 10 14 14 H 1.07992 * 119.99909 * 22.73470 * 13 12 11 15 15 C 1.46527 * 119.99772 * 202.73010 * 13 12 11 16 16 N 1.29516 * 119.99667 * 15.79561 * 15 13 12 17 17 Si 1.86798 * 119.99828 * 195.79045 * 15 13 12 18 18 H 1.48496 * 109.47246 * 60.00584 * 17 15 13 19 19 H 1.48499 * 109.46833 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47270 * 300.00180 * 17 15 13 21 21 C 1.41342 * 119.48895 * 359.97438 * 12 11 10 22 22 C 1.36484 * 119.96784 * 359.97438 * 21 12 11 23 23 C 1.38665 * 120.49593 * 0.02562 * 22 21 12 24 24 N 1.48021 * 119.73559 * 179.97438 * 23 22 21 25 25 O 1.31701 * 120.00209 * 354.21267 * 24 23 22 26 26 O 1.31701 * 119.99781 * 174.20949 * 24 23 22 27 27 C 1.47021 * 110.99752 * 236.31405 * 2 1 3 28 28 H 1.09001 * 109.46708 * 56.04656 * 1 2 3 29 29 H 1.08999 * 109.47187 * 176.04645 * 1 2 3 30 30 H 1.08995 * 109.47253 * 296.04747 * 1 2 3 31 31 H 1.08999 * 109.50791 * 57.66631 * 3 2 1 32 32 H 1.09007 * 109.50343 * 297.53954 * 3 2 1 33 33 H 1.08993 * 109.50584 * 296.91420 * 4 3 2 34 34 H 1.08998 * 109.53818 * 176.80300 * 4 3 2 35 35 H 1.09002 * 109.46698 * 305.08987 * 8 6 5 36 36 H 1.08999 * 109.47131 * 185.08262 * 8 6 5 37 37 H 0.97000 * 119.99791 * 0.02562 * 9 8 6 38 38 H 1.07997 * 120.25208 * 0.04121 * 11 10 9 39 39 H 0.97003 * 119.99090 * 179.97438 * 16 15 13 40 40 H 1.08003 * 120.01458 * 180.24932 * 21 12 11 41 41 H 1.08000 * 119.75224 * 179.97438 * 22 21 12 42 42 H 1.09005 * 109.46705 * 62.44364 * 27 2 1 43 43 H 1.08995 * 109.54678 * 302.31235 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3724 0.0000 4 6 3.5250 1.3263 0.0604 5 8 4.0176 0.5573 -1.0403 6 6 3.5249 -0.7850 -1.0709 7 1 3.8392 -1.3087 -0.1680 8 6 4.0825 -1.5060 -2.2999 9 7 5.5367 -1.6319 -2.1742 10 6 6.2730 -2.2592 -3.1817 11 6 5.6536 -2.6335 -4.3587 12 6 6.4073 -3.2673 -5.3698 13 6 5.7938 -3.6546 -6.5713 14 1 4.8828 -3.1719 -6.8926 15 6 6.3896 -4.7140 -7.3897 16 7 7.2870 -5.4975 -6.8815 17 14 5.8546 -4.9346 -9.1658 18 1 6.1386 -3.6913 -9.9264 19 1 6.6012 -6.0668 -9.7706 20 1 4.3983 -5.2215 -9.2121 21 6 7.7845 -3.5088 -5.1631 22 6 8.3750 -3.1292 -3.9926 23 6 7.6336 -2.5066 -2.9999 24 7 8.2912 -2.1024 -1.7368 25 8 9.5454 -2.4349 -1.5116 26 8 7.6218 -1.4103 -0.8382 27 6 1.9958 -0.7613 -1.1421 28 1 -0.3633 0.5740 -0.8525 29 1 -0.3633 -1.0252 -0.0709 30 1 -0.3633 0.4512 0.9232 31 1 1.6134 1.9092 0.8681 32 1 1.6829 1.8825 -0.9111 33 1 3.8385 0.8642 0.9964 34 1 3.9228 2.3395 0.0034 35 1 3.8434 -0.9338 -3.1963 36 1 3.6368 -2.4981 -2.3724 37 1 5.9881 -1.2795 -1.3913 38 1 4.6006 -2.4425 -4.5040 39 1 7.6811 -6.1990 -7.4233 40 1 8.3701 -3.9895 -5.9327 41 1 9.4275 -3.3158 -3.8382 42 1 1.6821 -0.2857 -2.0714 43 1 1.6139 -1.7816 -1.1076 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162689484.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:04 Heat of formation + Delta-G solvation = -21.570358 kcal Electronic energy + Delta-G solvation = -27085.739161 eV Core-core repulsion = 23133.887685 eV Total energy + Delta-G solvation = -3951.851476 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.93366 -40.38566 -38.49460 -37.28507 -36.56139 -35.66122 -34.59626 -33.02173 -32.45330 -30.32923 -29.59863 -28.63081 -27.02867 -25.38535 -25.08619 -23.80740 -22.75984 -22.02445 -21.45427 -19.83448 -18.86593 -18.47009 -17.68176 -17.59447 -17.25852 -16.89547 -16.69691 -16.33196 -16.07367 -15.79734 -15.57733 -15.07110 -14.89320 -14.70061 -14.63247 -14.59167 -14.01989 -13.59226 -13.31893 -13.25890 -13.08875 -12.96604 -12.91256 -12.77380 -12.37663 -12.15088 -12.02471 -11.80023 -11.61957 -11.58749 -11.44395 -11.40569 -11.23763 -10.89885 -10.68962 -10.06613 -9.44085 -9.24452 -8.51626 -6.88595 -1.04629 0.79638 1.10525 1.14483 1.40294 1.57279 1.61140 2.08119 2.32178 2.43668 2.70059 2.90073 3.29096 3.76467 3.85290 3.91786 3.95157 4.01683 4.17322 4.30833 4.42632 4.46729 4.48513 4.55579 4.59495 4.61481 4.62947 4.65462 4.77586 4.82191 4.86091 4.89858 4.97762 5.00277 5.12946 5.43153 5.56067 5.59561 5.76596 5.85561 5.94786 6.01105 6.14378 6.24167 6.31196 6.57029 6.64508 6.99310 7.62698 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011967 B = 0.003558 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.167682 B = 7866.975495 C = 9904.306234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.558 5.558 3 C 0.024 3.976 4 C 0.054 3.946 5 O -0.400 6.400 6 C 0.087 3.913 7 H 0.055 0.945 8 C 0.130 3.870 9 N -0.732 5.732 10 C 0.277 3.723 11 C -0.305 4.305 12 C 0.083 3.917 13 C -0.315 4.315 14 H 0.133 0.867 15 C 0.022 3.978 16 N -0.720 5.720 17 Si 1.009 2.991 18 H -0.250 1.250 19 H -0.262 1.262 20 H -0.244 1.244 21 C -0.135 4.135 22 C -0.080 4.080 23 C -0.131 4.131 24 N 0.054 4.946 25 O -0.413 6.413 26 O -0.399 6.399 27 C 0.036 3.964 28 H 0.032 0.968 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.044 0.956 33 H 0.051 0.949 34 H 0.112 0.888 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.408 0.592 38 H 0.141 0.859 39 H 0.324 0.676 40 H 0.142 0.858 41 H 0.114 0.886 42 H 0.052 0.948 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.352 3.282 -4.168 18.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.283 5.283 3 C -0.104 4.104 4 C -0.022 4.022 5 O -0.320 6.320 6 C 0.029 3.971 7 H 0.073 0.927 8 C 0.005 3.995 9 N -0.376 5.376 10 C 0.167 3.833 11 C -0.334 4.334 12 C 0.078 3.922 13 C -0.340 4.340 14 H 0.151 0.849 15 C -0.210 4.210 16 N -0.339 5.339 17 Si 0.825 3.175 18 H -0.173 1.173 19 H -0.186 1.186 20 H -0.167 1.167 21 C -0.157 4.157 22 C -0.100 4.100 23 C -0.247 4.247 24 N 0.439 4.561 25 O -0.542 6.542 26 O -0.524 6.524 27 C -0.093 4.093 28 H 0.051 0.949 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.124 0.876 32 H 0.063 0.937 33 H 0.070 0.930 34 H 0.130 0.870 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.258 0.742 38 H 0.159 0.841 39 H 0.138 0.862 40 H 0.160 0.840 41 H 0.132 0.868 42 H 0.070 0.930 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -16.981 3.016 -3.628 17.624 hybrid contribution 0.576 0.355 0.149 0.693 sum -16.406 3.371 -3.478 17.106 Atomic orbital electron populations 1.22439 0.84961 1.02977 1.01775 1.62166 1.09870 1.13944 1.42354 1.22794 0.95282 0.89742 1.02607 1.22857 0.93392 0.96763 0.89217 1.88059 1.70944 1.23741 1.49209 1.22296 0.93681 0.83459 0.97652 0.92692 1.21484 0.80235 1.00201 0.97533 1.46163 1.07181 1.61082 1.23216 1.17456 0.86670 0.89212 0.89964 1.20467 1.00249 1.19988 0.92694 1.17959 0.91417 0.90195 0.92642 1.22345 1.05921 1.07371 0.98374 0.84908 1.28926 0.92613 0.93095 1.06329 1.69082 1.14037 1.09083 1.41716 0.84783 0.80668 0.80021 0.71981 1.17324 1.18578 1.16686 1.21427 0.95643 1.02267 0.96371 1.20046 0.99167 0.98001 0.92762 1.20193 0.93260 1.24420 0.86858 1.49866 1.01715 1.01011 1.03548 1.96023 0.98876 1.70513 1.88828 1.95598 1.63763 1.48734 1.44270 1.22619 0.93051 1.00787 0.92827 0.94908 0.90350 0.90030 0.87582 0.93742 0.93037 0.87048 0.90861 0.89116 0.74241 0.84149 0.86181 0.84009 0.86834 0.93002 0.87742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.63 127.69 1.23 1.59 16 2 N -0.56 -11.19 4.98 -921.43 -4.59 -15.78 16 3 C 0.02 0.45 5.66 86.31 0.49 0.94 16 4 C 0.05 1.32 7.01 72.01 0.50 1.82 16 5 O -0.40 -12.88 10.42 -148.98 -1.55 -14.43 16 6 C 0.09 2.54 2.84 30.63 0.09 2.62 16 7 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 8 C 0.13 4.12 4.64 86.38 0.40 4.53 16 9 N -0.73 -31.56 5.56 -339.54 -1.89 -33.45 16 10 C 0.28 13.03 6.63 38.18 0.25 13.28 16 11 C -0.31 -12.67 9.08 22.97 0.21 -12.46 16 12 C 0.08 3.48 5.63 -21.29 -0.12 3.36 16 13 C -0.32 -11.15 9.32 24.95 0.23 -10.92 16 14 H 0.13 3.98 7.98 -2.91 -0.02 3.95 16 15 C 0.02 0.71 5.36 87.20 0.47 1.18 16 16 N -0.72 -25.08 10.86 23.21 0.25 -24.83 16 17 Si 1.01 22.41 29.67 68.60 2.04 24.45 16 18 H -0.25 -5.58 7.11 99.48 0.71 -4.87 16 19 H -0.26 -5.63 7.11 99.48 0.71 -4.93 16 20 H -0.24 -5.14 7.11 99.48 0.71 -4.44 16 21 C -0.13 -5.99 8.73 22.62 0.20 -5.79 16 22 C -0.08 -3.94 9.50 21.96 0.21 -3.73 16 23 C -0.13 -6.98 6.92 36.78 0.25 -6.72 16 24 N 0.05 3.22 4.98 -45.50 -0.23 2.99 16 25 O -0.41 -26.01 19.14 3.51 0.07 -25.94 16 26 O -0.40 -23.78 16.29 3.51 0.06 -23.73 16 27 C 0.04 0.77 4.94 86.31 0.43 1.20 16 28 H 0.03 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.08 0.98 8.08 -2.39 -0.02 0.96 16 30 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.07 2.21 7.68 -2.39 -0.02 2.20 16 36 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 37 H 0.41 19.67 4.68 -112.82 -0.53 19.15 16 38 H 0.14 4.95 6.71 -2.91 -0.02 4.93 16 39 H 0.32 9.54 8.27 -92.71 -0.77 8.77 16 40 H 0.14 5.98 5.98 -2.91 -0.02 5.97 16 41 H 0.11 5.62 7.56 -2.91 -0.02 5.60 16 42 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 43 H 0.10 1.90 8.11 -2.39 -0.02 1.88 16 Total: -1.00 -67.58 357.45 -0.49 -68.07 By element: Atomic # 1 Polarization: 51.24 SS G_CDS: 0.51 Total: 51.75 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: 4.84 Total: -9.10 kcal Atomic # 7 Polarization: -64.61 SS G_CDS: -6.46 Total: -71.07 kcal Atomic # 8 Polarization: -62.67 SS G_CDS: -1.43 Total: -64.10 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: 2.04 Total: 24.45 kcal Total: -67.58 -0.49 -68.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162689484.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.501 kcal (2) G-P(sol) polarization free energy of solvation -67.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds