Wall clock time and date at job start Tue Mar 31 2020 13:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47015 * 111.00688 * 2 1 4 4 C 1.53094 * 109.26089 * 182.39123 * 3 2 1 5 5 O 1.43019 * 109.25950 * 303.14821 * 4 3 2 6 6 C 1.43015 * 113.73529 * 58.67116 * 5 4 3 7 7 H 1.08998 * 109.50996 * 61.26910 * 6 5 4 8 8 C 1.53001 * 109.50555 * 181.35407 * 6 5 4 9 9 N 1.46497 * 109.46874 * 299.99953 * 8 6 5 10 10 C 1.39672 * 119.99642 * 179.97438 * 9 8 6 11 11 C 1.38170 * 119.99385 * 355.12953 * 10 9 8 12 12 C 1.41137 * 119.50806 * 180.02562 * 11 10 9 13 13 C 1.40356 * 120.25487 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99645 * 329.67509 * 13 12 11 15 15 C 1.46514 * 120.00171 * 149.68081 * 13 12 11 16 16 N 1.29520 * 120.00246 * 349.28343 * 15 13 12 17 17 Si 1.86803 * 120.00016 * 169.28525 * 15 13 12 18 18 H 1.48497 * 109.46992 * 90.00198 * 17 15 13 19 19 H 1.48503 * 109.47030 * 210.00142 * 17 15 13 20 20 H 1.48494 * 109.47049 * 329.99596 * 17 15 13 21 21 C 1.41338 * 119.49011 * 359.97438 * 12 11 10 22 22 C 1.36490 * 119.96638 * 0.02562 * 21 12 11 23 23 C 1.38659 * 120.49988 * 359.72649 * 22 21 12 24 24 N 1.48023 * 119.74178 * 180.29875 * 23 22 21 25 25 O 1.31707 * 119.99737 * 142.90396 * 24 23 22 26 26 O 1.31692 * 119.99716 * 322.90236 * 24 23 22 27 27 C 1.47019 * 110.99681 * 123.63160 * 2 1 3 28 28 H 1.09000 * 109.47296 * 296.37022 * 1 2 3 29 29 H 1.09007 * 109.46562 * 56.36508 * 1 2 3 30 30 H 1.08999 * 109.47655 * 176.36232 * 1 2 3 31 31 H 1.08998 * 109.49999 * 302.32776 * 3 2 1 32 32 H 1.09001 * 109.50251 * 62.45276 * 3 2 1 33 33 H 1.08994 * 109.50410 * 183.21480 * 4 3 2 34 34 H 1.09002 * 109.50752 * 63.08396 * 4 3 2 35 35 H 1.08999 * 109.47414 * 60.00090 * 8 6 5 36 36 H 1.09002 * 109.47117 * 179.97438 * 8 6 5 37 37 H 0.96995 * 120.00410 * 0.02562 * 9 8 6 38 38 H 1.08003 * 120.24742 * 359.97051 * 11 10 9 39 39 H 0.96996 * 119.99941 * 179.97438 * 16 15 13 40 40 H 1.08002 * 120.01369 * 179.97438 * 21 12 11 41 41 H 1.08001 * 119.75011 * 180.02562 * 22 21 12 42 42 H 1.09005 * 109.50428 * 57.67153 * 27 2 1 43 43 H 1.08996 * 109.54294 * 297.56473 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9960 1.3724 0.0000 4 6 3.5250 1.3262 -0.0603 5 8 4.0175 0.5573 1.0404 6 6 3.5249 -0.7850 1.0710 7 1 3.8385 -1.3086 0.1679 8 6 4.0832 -1.5062 2.2995 9 7 5.5465 -1.5249 2.2316 10 6 6.2850 -2.1327 3.2494 11 6 5.6425 -2.6269 4.3684 12 6 6.3989 -3.2385 5.3910 13 6 5.7624 -3.7464 6.5341 14 1 4.8526 -3.2888 6.8938 15 6 6.3321 -4.8972 7.2396 16 7 7.2964 -5.5741 6.7017 17 14 5.6676 -5.3882 8.9150 18 1 4.5573 -6.3591 8.7420 19 1 6.7521 -6.0137 9.7137 20 1 5.1653 -4.1823 9.6211 21 6 7.8023 -3.3367 5.2545 22 6 8.4152 -2.8413 4.1401 23 6 7.6706 -2.2452 3.1337 24 7 8.3520 -1.7195 1.9293 25 8 7.7802 -1.8306 0.7480 26 8 9.5298 -1.1407 2.0390 27 6 1.9957 -0.7602 1.1428 28 1 -0.3634 0.4565 0.9207 29 1 -0.3633 0.5693 -0.8557 30 1 -0.3634 -1.0256 -0.0652 31 1 1.6135 1.9091 -0.8682 32 1 1.6828 1.8825 0.9110 33 1 3.9223 2.3396 -0.0029 34 1 3.8386 0.8641 -0.9964 35 1 3.7680 -0.9832 3.2024 36 1 3.7070 -2.5290 2.3225 37 1 6.0025 -1.1147 1.4802 38 1 4.5696 -2.5449 4.4603 39 1 7.6738 -6.3358 7.1689 40 1 8.3894 -3.8028 6.0320 41 1 9.4877 -2.9186 4.0392 42 1 1.6132 -1.7803 1.1088 43 1 1.6826 -0.2849 2.0724 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162689485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:09 Heat of formation + Delta-G solvation = -4.878870 kcal Electronic energy + Delta-G solvation = -27062.981038 eV Core-core repulsion = 23111.853360 eV Total energy + Delta-G solvation = -3951.127679 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.88278 -38.79301 -36.86703 -36.08188 -35.30163 -33.93869 -32.97316 -31.81914 -30.71501 -29.25117 -28.32746 -26.85583 -25.84777 -24.29407 -23.67009 -22.60652 -21.00668 -20.57210 -20.41237 -18.13625 -17.23258 -16.82415 -16.61350 -16.41099 -15.94270 -15.73546 -15.43679 -15.13779 -14.92380 -14.60239 -14.07841 -13.84565 -13.56927 -13.43356 -13.11381 -13.06317 -12.60873 -12.44202 -12.40800 -12.16556 -11.92210 -11.60711 -11.56071 -11.43757 -11.21661 -11.05002 -10.66379 -10.58937 -10.06327 -10.03377 -9.90309 -9.74020 -9.67192 -9.50378 -9.24719 -8.68852 -8.16353 -7.52748 -6.81576 -5.04659 0.84555 2.37991 2.70175 2.75071 2.76079 2.79064 2.86841 3.40756 3.44436 3.65355 3.96340 3.99110 4.69884 4.73461 4.77427 4.94722 5.03499 5.07102 5.15867 5.20987 5.27801 5.42073 5.51031 5.54867 5.56207 5.67920 5.72283 5.86847 6.00648 6.20426 6.32273 6.38835 6.49975 6.60972 6.63353 6.64297 6.85167 7.10340 7.17809 7.33565 7.45518 7.49540 7.72673 7.97204 8.15282 8.22027 8.36415 8.40539 9.34920 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011797 B = 0.003592 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.867123 B = 7792.297200 C = 9855.770208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.542 5.542 3 C 0.017 3.983 4 C 0.062 3.938 5 O -0.373 6.373 6 C 0.083 3.917 7 H 0.076 0.924 8 C 0.140 3.860 9 N -0.736 5.736 10 C 0.301 3.699 11 C -0.308 4.308 12 C 0.147 3.853 13 C -0.401 4.401 14 H 0.098 0.902 15 C 0.066 3.934 16 N -0.727 5.727 17 Si 0.929 3.071 18 H -0.261 1.261 19 H -0.268 1.268 20 H -0.251 1.251 21 C -0.171 4.171 22 C -0.035 4.035 23 C -0.165 4.165 24 N 0.040 4.960 25 O -0.293 6.293 26 O -0.277 6.277 27 C 0.027 3.973 28 H 0.027 0.973 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.098 0.902 34 H 0.061 0.939 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.407 0.593 38 H 0.114 0.886 39 H 0.301 0.699 40 H 0.130 0.870 41 H 0.113 0.887 42 H 0.090 0.910 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.987 4.449 -2.599 13.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.267 5.267 3 C -0.111 4.111 4 C -0.015 4.015 5 O -0.292 6.292 6 C 0.025 3.975 7 H 0.094 0.906 8 C 0.014 3.986 9 N -0.371 5.371 10 C 0.195 3.805 11 C -0.334 4.334 12 C 0.143 3.857 13 C -0.427 4.427 14 H 0.116 0.884 15 C -0.165 4.165 16 N -0.346 5.346 17 Si 0.750 3.250 18 H -0.185 1.185 19 H -0.193 1.193 20 H -0.174 1.174 21 C -0.193 4.193 22 C -0.055 4.055 23 C -0.265 4.265 24 N 0.479 4.521 25 O -0.455 6.455 26 O -0.446 6.446 27 C -0.102 4.102 28 H 0.045 0.955 29 H 0.088 0.912 30 H 0.090 0.910 31 H 0.103 0.897 32 H 0.061 0.939 33 H 0.117 0.883 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.247 0.753 38 H 0.132 0.868 39 H 0.114 0.886 40 H 0.147 0.853 41 H 0.131 0.869 42 H 0.109 0.891 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.873 3.966 -2.656 13.729 hybrid contribution -0.323 0.291 0.465 0.636 sum -13.195 4.257 -2.191 14.037 Atomic orbital electron populations 1.22381 0.86759 1.02539 1.00612 1.62178 1.08260 1.13696 1.42563 1.22834 0.96940 0.89739 1.01624 1.22656 0.91732 0.96643 0.90436 1.88087 1.69826 1.23234 1.48055 1.22398 0.91803 0.83984 0.99354 0.90633 1.21207 0.81718 0.99277 0.96358 1.44846 1.04447 1.62393 1.25464 1.17151 0.86642 0.88384 0.88363 1.20396 0.98235 1.19361 0.95438 1.17586 0.91392 0.86411 0.90349 1.21241 1.07521 1.08284 1.05673 0.88385 1.27751 0.93204 0.95387 1.00113 1.69097 1.16276 1.11975 1.37297 0.85945 0.79845 0.80235 0.78940 1.18504 1.19263 1.17440 1.21047 0.94719 1.05694 0.97794 1.19903 0.98423 0.95614 0.91549 1.19404 0.90057 1.26435 0.90636 1.50135 1.01464 0.97151 1.03374 1.96040 1.68567 1.69255 1.11683 1.96122 1.06369 1.47138 1.95017 1.22717 0.95459 0.99780 0.92218 0.95460 0.91221 0.91019 0.89672 0.93894 0.88348 0.92093 0.91686 0.90570 0.75287 0.86807 0.88638 0.85268 0.86936 0.89139 0.93438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.60 60.06 0.58 0.78 16 2 N -0.54 -5.71 4.99 -242.59 -1.21 -6.92 16 3 C 0.02 0.17 5.66 -3.71 -0.02 0.15 16 4 C 0.06 0.72 7.01 37.21 0.26 0.98 16 5 O -0.37 -5.64 10.22 -35.23 -0.36 -6.00 16 6 C 0.08 1.15 2.89 -26.68 -0.08 1.07 16 7 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 8 C 0.14 2.19 4.63 -4.04 -0.02 2.17 16 9 N -0.74 -14.81 5.40 -58.67 -0.32 -15.13 16 10 C 0.30 6.85 6.61 -83.84 -0.55 6.30 16 11 C -0.31 -6.76 9.08 -38.51 -0.35 -7.11 16 12 C 0.15 3.38 5.57 -106.82 -0.59 2.78 16 13 C -0.40 -8.60 9.30 -35.45 -0.33 -8.93 16 14 H 0.10 1.94 7.96 -52.49 -0.42 1.53 16 15 C 0.07 1.31 5.40 -15.19 -0.08 1.23 16 16 N -0.73 -15.08 11.09 55.98 0.62 -14.45 16 17 Si 0.93 14.54 29.66 -169.99 -5.04 9.50 16 18 H -0.26 -4.05 7.11 56.52 0.40 -3.65 16 19 H -0.27 -4.12 7.11 56.52 0.40 -3.72 16 20 H -0.25 -3.92 7.11 56.52 0.40 -3.52 16 21 C -0.17 -3.97 8.67 -39.03 -0.34 -4.30 16 22 C -0.03 -0.82 9.59 -40.06 -0.38 -1.20 16 23 C -0.16 -4.06 6.60 -79.32 -0.52 -4.59 16 24 N 0.04 1.05 4.77 34.27 0.16 1.21 16 25 O -0.29 -7.58 17.40 -31.57 -0.55 -8.13 16 26 O -0.28 -7.39 19.67 -31.56 -0.62 -8.01 16 27 C 0.03 0.30 4.95 -3.71 -0.02 0.28 16 28 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.06 1.01 7.76 -51.93 -0.40 0.60 16 36 H 0.08 1.11 8.11 -51.93 -0.42 0.68 16 37 H 0.41 8.75 5.80 -40.82 -0.24 8.51 16 38 H 0.11 2.25 6.72 -52.48 -0.35 1.90 16 39 H 0.30 5.47 8.27 -40.82 -0.34 5.13 16 40 H 0.13 2.94 6.38 -52.49 -0.33 2.60 16 41 H 0.11 2.53 8.01 -52.49 -0.42 2.11 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 360.50 15.07 5.43 5.43 Total: -1.00 -28.13 360.50 -10.28 -38.41 By element: Atomic # 1 Polarization: 20.43 SS G_CDS: -5.95 Total: 14.48 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -2.45 Total: -10.39 kcal Atomic # 7 Polarization: -34.54 SS G_CDS: -0.74 Total: -35.29 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -1.53 Total: -22.15 kcal Atomic # 14 Polarization: 14.54 SS G_CDS: -5.04 Total: 9.50 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.13 -10.28 -38.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162689485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.534 kcal (2) G-P(sol) polarization free energy of solvation -28.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds