Wall clock time and date at job start Tue Mar 31 2020 13:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47015 * 111.00688 * 2 1 4 4 C 1.53094 * 109.26089 * 182.39123 * 3 2 1 5 5 O 1.43019 * 109.25950 * 303.14821 * 4 3 2 6 6 C 1.43015 * 113.73529 * 58.67116 * 5 4 3 7 7 H 1.08998 * 109.50996 * 61.26910 * 6 5 4 8 8 C 1.53001 * 109.50555 * 181.35407 * 6 5 4 9 9 N 1.46497 * 109.46874 * 299.99953 * 8 6 5 10 10 C 1.39672 * 119.99642 * 179.97438 * 9 8 6 11 11 C 1.38170 * 119.99385 * 355.12953 * 10 9 8 12 12 C 1.41137 * 119.50806 * 180.02562 * 11 10 9 13 13 C 1.40356 * 120.25487 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99645 * 329.67509 * 13 12 11 15 15 C 1.46514 * 120.00171 * 149.68081 * 13 12 11 16 16 N 1.29520 * 120.00246 * 349.28343 * 15 13 12 17 17 Si 1.86803 * 120.00016 * 169.28525 * 15 13 12 18 18 H 1.48497 * 109.46992 * 90.00198 * 17 15 13 19 19 H 1.48503 * 109.47030 * 210.00142 * 17 15 13 20 20 H 1.48494 * 109.47049 * 329.99596 * 17 15 13 21 21 C 1.41338 * 119.49011 * 359.97438 * 12 11 10 22 22 C 1.36490 * 119.96638 * 0.02562 * 21 12 11 23 23 C 1.38659 * 120.49988 * 359.72649 * 22 21 12 24 24 N 1.48023 * 119.74178 * 180.29875 * 23 22 21 25 25 O 1.31707 * 119.99737 * 142.90396 * 24 23 22 26 26 O 1.31692 * 119.99716 * 322.90236 * 24 23 22 27 27 C 1.47019 * 110.99681 * 123.63160 * 2 1 3 28 28 H 1.09000 * 109.47296 * 296.37022 * 1 2 3 29 29 H 1.09007 * 109.46562 * 56.36508 * 1 2 3 30 30 H 1.08999 * 109.47655 * 176.36232 * 1 2 3 31 31 H 1.08998 * 109.49999 * 302.32776 * 3 2 1 32 32 H 1.09001 * 109.50251 * 62.45276 * 3 2 1 33 33 H 1.08994 * 109.50410 * 183.21480 * 4 3 2 34 34 H 1.09002 * 109.50752 * 63.08396 * 4 3 2 35 35 H 1.08999 * 109.47414 * 60.00090 * 8 6 5 36 36 H 1.09002 * 109.47117 * 179.97438 * 8 6 5 37 37 H 0.96995 * 120.00410 * 0.02562 * 9 8 6 38 38 H 1.08003 * 120.24742 * 359.97051 * 11 10 9 39 39 H 0.96996 * 119.99941 * 179.97438 * 16 15 13 40 40 H 1.08002 * 120.01369 * 179.97438 * 21 12 11 41 41 H 1.08001 * 119.75011 * 180.02562 * 22 21 12 42 42 H 1.09005 * 109.50428 * 57.67153 * 27 2 1 43 43 H 1.08996 * 109.54294 * 297.56473 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9960 1.3724 0.0000 4 6 3.5250 1.3262 -0.0603 5 8 4.0175 0.5573 1.0404 6 6 3.5249 -0.7850 1.0710 7 1 3.8385 -1.3086 0.1679 8 6 4.0832 -1.5062 2.2995 9 7 5.5465 -1.5249 2.2316 10 6 6.2850 -2.1327 3.2494 11 6 5.6425 -2.6269 4.3684 12 6 6.3989 -3.2385 5.3910 13 6 5.7624 -3.7464 6.5341 14 1 4.8526 -3.2888 6.8938 15 6 6.3321 -4.8972 7.2396 16 7 7.2964 -5.5741 6.7017 17 14 5.6676 -5.3882 8.9150 18 1 4.5573 -6.3591 8.7420 19 1 6.7521 -6.0137 9.7137 20 1 5.1653 -4.1823 9.6211 21 6 7.8023 -3.3367 5.2545 22 6 8.4152 -2.8413 4.1401 23 6 7.6706 -2.2452 3.1337 24 7 8.3520 -1.7195 1.9293 25 8 7.7802 -1.8306 0.7480 26 8 9.5298 -1.1407 2.0390 27 6 1.9957 -0.7602 1.1428 28 1 -0.3634 0.4565 0.9207 29 1 -0.3633 0.5693 -0.8557 30 1 -0.3634 -1.0256 -0.0652 31 1 1.6135 1.9091 -0.8682 32 1 1.6828 1.8825 0.9110 33 1 3.9223 2.3396 -0.0029 34 1 3.8386 0.8641 -0.9964 35 1 3.7680 -0.9832 3.2024 36 1 3.7070 -2.5290 2.3225 37 1 6.0025 -1.1147 1.4802 38 1 4.5696 -2.5449 4.4603 39 1 7.6738 -6.3358 7.1689 40 1 8.3894 -3.8028 6.0320 41 1 9.4877 -2.9186 4.0392 42 1 1.6132 -1.7803 1.1088 43 1 1.6826 -0.2849 2.0724 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162689485.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:08 Heat of formation + Delta-G solvation = -22.658814 kcal Electronic energy + Delta-G solvation = -27063.752035 eV Core-core repulsion = 23111.853360 eV Total energy + Delta-G solvation = -3951.898675 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.96236 -40.41073 -38.65859 -37.28187 -36.55619 -35.56816 -34.79477 -33.07333 -32.44961 -30.33769 -29.61929 -28.64797 -27.05574 -25.43280 -25.09922 -23.84279 -22.66369 -22.08771 -21.47511 -19.77234 -19.02181 -18.65429 -17.77640 -17.66241 -17.25188 -17.05957 -16.74078 -16.17052 -16.07256 -15.81002 -15.51325 -15.08941 -14.93632 -14.73921 -14.69126 -14.57892 -13.98883 -13.65655 -13.32019 -13.26186 -13.04466 -12.95323 -12.90501 -12.73760 -12.38821 -12.15696 -12.02191 -11.91660 -11.81239 -11.62317 -11.57122 -11.46254 -11.37563 -10.92009 -10.71611 -9.95484 -9.45937 -9.13843 -8.51768 -6.78936 -1.11610 0.70064 0.95370 1.06851 1.41800 1.51796 1.61214 2.09701 2.30866 2.36334 2.67825 2.86239 3.29453 3.72253 3.82046 3.90917 3.94376 4.00435 4.15348 4.28794 4.44370 4.46636 4.53991 4.56633 4.58469 4.60530 4.63291 4.64217 4.76230 4.80372 4.86333 4.87560 4.95436 4.99488 5.07818 5.42918 5.59341 5.66325 5.69721 5.84032 5.93116 6.03067 6.11811 6.27378 6.35220 6.37941 6.63003 6.68856 7.76723 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011797 B = 0.003592 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.867123 B = 7792.297200 C = 9855.770208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.556 5.556 3 C 0.023 3.977 4 C 0.055 3.945 5 O -0.403 6.403 6 C 0.087 3.913 7 H 0.062 0.938 8 C 0.136 3.864 9 N -0.735 5.735 10 C 0.288 3.712 11 C -0.306 4.306 12 C 0.106 3.894 13 C -0.368 4.368 14 H 0.123 0.877 15 C 0.029 3.971 16 N -0.741 5.741 17 Si 1.006 2.994 18 H -0.253 1.253 19 H -0.263 1.263 20 H -0.245 1.245 21 C -0.155 4.155 22 C -0.060 4.060 23 C -0.170 4.170 24 N 0.045 4.955 25 O -0.334 6.334 26 O -0.351 6.351 27 C 0.035 3.965 28 H 0.031 0.969 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.107 0.893 32 H 0.042 0.958 33 H 0.111 0.889 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.398 0.602 38 H 0.138 0.862 39 H 0.318 0.682 40 H 0.132 0.868 41 H 0.111 0.889 42 H 0.105 0.895 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.654 2.987 0.640 16.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.281 5.281 3 C -0.105 4.105 4 C -0.022 4.022 5 O -0.322 6.322 6 C 0.029 3.971 7 H 0.080 0.920 8 C 0.012 3.988 9 N -0.367 5.367 10 C 0.179 3.821 11 C -0.333 4.333 12 C 0.101 3.899 13 C -0.393 4.393 14 H 0.140 0.860 15 C -0.201 4.201 16 N -0.360 5.360 17 Si 0.823 3.177 18 H -0.177 1.177 19 H -0.187 1.187 20 H -0.168 1.168 21 C -0.177 4.177 22 C -0.080 4.080 23 C -0.277 4.277 24 N 0.460 4.540 25 O -0.485 6.485 26 O -0.500 6.500 27 C -0.094 4.094 28 H 0.049 0.951 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.125 0.875 32 H 0.060 0.940 33 H 0.129 0.871 34 H 0.073 0.927 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.236 0.764 38 H 0.156 0.844 39 H 0.131 0.869 40 H 0.150 0.850 41 H 0.129 0.871 42 H 0.123 0.877 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -16.427 2.608 0.397 16.637 hybrid contribution 0.547 0.411 -0.025 0.684 sum -15.880 3.019 0.372 16.169 Atomic orbital electron populations 1.22442 0.85001 1.03370 1.01376 1.62191 1.09841 1.13878 1.42189 1.22800 0.95385 0.89802 1.02551 1.22863 0.93346 0.96727 0.89220 1.88039 1.70922 1.23866 1.49419 1.22326 0.93675 0.83379 0.97752 0.92007 1.21476 0.79098 1.00586 0.97630 1.45069 1.06207 1.61100 1.24357 1.17364 0.86208 0.89005 0.89502 1.20561 0.99185 1.18767 0.94768 1.17918 0.91446 0.88675 0.91863 1.21972 1.07185 1.06561 1.03626 0.85954 1.28763 0.93171 0.94612 1.03587 1.69094 1.15890 1.12053 1.38978 0.84807 0.79304 0.80083 0.73529 1.17733 1.18662 1.16827 1.21177 0.95269 1.04164 0.97045 1.19976 0.98600 0.97205 0.92229 1.19862 0.91244 1.26117 0.90439 1.50132 1.01598 0.98725 1.03499 1.95975 1.68982 1.71162 1.12347 1.96068 1.08231 1.50527 1.95168 1.22615 0.93162 1.00897 0.92696 0.95078 0.89955 0.90287 0.87520 0.93960 0.87120 0.92671 0.91051 0.89010 0.76356 0.84414 0.86868 0.85012 0.87113 0.87667 0.93261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 9.60 127.69 1.23 1.57 16 2 N -0.56 -10.72 4.99 -921.42 -4.59 -15.32 16 3 C 0.02 0.41 5.66 86.31 0.49 0.90 16 4 C 0.05 1.27 7.01 72.01 0.50 1.77 16 5 O -0.40 -12.39 10.22 -148.98 -1.52 -13.91 16 6 C 0.09 2.40 2.89 30.63 0.09 2.48 16 7 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 8 C 0.14 4.19 4.63 86.38 0.40 4.59 16 9 N -0.73 -30.37 5.40 -339.54 -1.83 -32.21 16 10 C 0.29 13.32 6.61 38.18 0.25 13.58 16 11 C -0.31 -12.99 9.08 22.97 0.21 -12.78 16 12 C 0.11 4.66 5.57 -21.29 -0.12 4.54 16 13 C -0.37 -14.27 9.30 24.94 0.23 -14.04 16 14 H 0.12 4.17 7.96 -2.91 -0.02 4.15 16 15 C 0.03 1.00 5.40 87.19 0.47 1.48 16 16 N -0.74 -28.24 11.09 23.21 0.26 -27.98 16 17 Si 1.01 25.34 29.66 68.60 2.03 27.37 16 18 H -0.25 -6.19 7.11 99.48 0.71 -5.49 16 19 H -0.26 -6.44 7.11 99.48 0.71 -5.73 16 20 H -0.25 -6.02 7.11 99.48 0.71 -5.31 16 21 C -0.15 -7.11 8.67 22.62 0.20 -6.91 16 22 C -0.06 -2.94 9.59 21.96 0.21 -2.73 16 23 C -0.17 -8.82 6.60 36.78 0.24 -8.58 16 24 N 0.05 2.55 4.77 -45.50 -0.22 2.33 16 25 O -0.33 -18.75 17.40 3.50 0.06 -18.69 16 26 O -0.35 -20.58 19.67 3.53 0.07 -20.51 16 27 C 0.04 0.73 4.95 86.31 0.43 1.15 16 28 H 0.03 0.40 8.14 -2.39 -0.02 0.39 16 29 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.04 0.78 8.14 -2.39 -0.02 0.77 16 33 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.07 2.11 7.76 -2.39 -0.02 2.10 16 36 H 0.09 2.53 8.11 -2.39 -0.02 2.51 16 37 H 0.40 18.13 5.80 -92.71 -0.54 17.59 16 38 H 0.14 5.05 6.72 -2.91 -0.02 5.03 16 39 H 0.32 10.40 8.27 -92.71 -0.77 9.63 16 40 H 0.13 5.86 6.38 -2.91 -0.02 5.84 16 41 H 0.11 5.31 8.01 -2.91 -0.02 5.29 16 42 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 43 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -63.33 360.50 -0.41 -63.75 By element: Atomic # 1 Polarization: 47.65 SS G_CDS: 0.50 Total: 48.15 kcal Atomic # 6 Polarization: -17.81 SS G_CDS: 4.83 Total: -12.97 kcal Atomic # 7 Polarization: -66.79 SS G_CDS: -6.39 Total: -73.18 kcal Atomic # 8 Polarization: -51.72 SS G_CDS: -1.39 Total: -53.11 kcal Atomic # 14 Polarization: 25.34 SS G_CDS: 2.03 Total: 27.37 kcal Total: -63.33 -0.41 -63.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162689485.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.090 kcal (2) G-P(sol) polarization free energy of solvation -63.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds