Wall clock time and date at job start Tue Mar 31 2020 13:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35675 * 117.00016 * 2 1 4 4 N 1.32356 * 119.63716 * 359.97438 * 3 2 1 5 5 C 1.32461 * 121.55103 * 180.02562 * 4 3 2 6 6 N 1.38996 * 119.67134 * 179.97438 * 5 4 3 7 7 C 1.46501 * 119.99741 * 348.81728 * 6 5 4 8 8 C 1.50707 * 109.47156 * 89.99954 * 7 6 5 9 9 H 1.08005 * 119.99621 * 359.97438 * 8 7 6 10 10 C 1.37876 * 119.99793 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00116 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99774 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.47294 * 59.99857 * 12 10 8 14 14 H 1.48497 * 109.47277 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47194 * 300.00018 * 12 10 8 16 16 C 1.46495 * 119.99856 * 168.81465 * 6 5 4 17 17 C 1.54275 * 110.03074 * 232.35454 * 16 6 5 18 18 C 1.54887 * 104.19463 * 217.10475 * 17 16 6 19 19 C 1.54889 * 102.75058 * 37.94582 * 18 17 16 20 20 C 1.53877 * 110.03279 * 115.19405 * 16 6 5 21 21 C 1.39027 * 120.65855 * 0.02562 * 5 4 3 22 22 C 1.38450 * 119.21956 * 0.02562 * 21 5 4 23 23 C 1.38630 * 118.56897 * 0.26747 * 22 21 5 24 24 N 1.48009 * 120.35895 * 179.72535 * 23 22 21 25 25 O 1.21802 * 120.00418 * 0.02562 * 24 23 22 26 26 O 1.21801 * 119.99785 * 180.02562 * 24 23 22 27 27 H 1.08997 * 109.47444 * 300.00511 * 1 2 3 28 28 H 1.09009 * 109.46893 * 60.00644 * 1 2 3 29 29 H 1.08994 * 109.46916 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46794 * 209.99532 * 7 6 5 31 31 H 1.08997 * 109.47305 * 329.99671 * 7 6 5 32 32 H 0.97003 * 119.99624 * 180.02562 * 11 10 8 33 33 H 1.08995 * 110.02027 * 353.79537 * 16 6 5 34 34 H 1.08994 * 110.48456 * 335.78956 * 17 16 6 35 35 H 1.09002 * 110.48199 * 98.42948 * 17 16 6 36 36 H 1.09000 * 110.75950 * 279.62705 * 18 17 16 37 37 H 1.09003 * 110.91016 * 156.33298 * 18 17 16 38 38 H 1.09002 * 110.48678 * 203.37878 * 19 18 17 39 39 H 1.09001 * 110.48470 * 80.72834 * 19 18 17 40 40 H 1.09000 * 110.02592 * 238.56883 * 20 16 6 41 41 H 1.08998 * 110.03252 * 359.94656 * 20 16 6 42 42 H 1.08003 * 120.38409 * 180.02562 * 21 5 4 43 43 H 1.07997 * 120.71545 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 7 1.3171 2.3143 -0.0005 5 6 1.8787 3.5140 -0.0010 6 7 1.0766 4.6492 -0.0021 7 6 -0.3625 4.5290 -0.2487 8 6 -1.0816 4.3297 1.0606 9 1 -0.5225 4.2955 1.9840 10 6 -2.4533 4.1910 1.0796 11 7 -3.1341 4.2331 -0.0448 12 14 -3.3445 3.9432 2.7024 13 1 -3.0892 5.1061 3.5901 14 1 -4.8034 3.8227 2.4526 15 1 -2.8496 2.7044 3.3549 16 6 1.6704 5.9657 0.2434 17 6 0.9052 6.6884 1.3714 18 6 0.8922 8.1732 0.9307 19 6 0.6968 8.0730 -0.6026 20 6 1.5378 6.8461 -1.0116 21 6 3.2624 3.6490 -0.0016 22 6 4.0524 2.5120 -0.0021 23 6 3.4308 1.2728 -0.0078 24 7 4.2370 0.0316 -0.0147 25 8 5.4533 0.0953 -0.0150 26 8 3.6840 -1.0537 -0.0201 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.7260 5.4378 -0.7282 31 1 -0.5495 3.6750 -0.8997 32 1 -4.0991 4.1359 -0.0313 33 1 2.7206 5.8568 0.5139 34 1 -0.1119 6.3045 1.4491 35 1 1.4297 6.5768 2.3204 36 1 1.8404 8.6552 1.1687 37 1 0.0621 8.7086 1.3917 38 1 1.0692 8.9718 -1.0941 39 1 -0.3540 7.9127 -0.8436 40 1 2.5237 7.1651 -1.3497 41 1 1.0325 6.2935 -1.8037 42 1 3.7156 4.6293 -0.0016 43 1 5.1296 2.5887 -0.0022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166535258.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:21 Heat of formation + Delta-G solvation = -0.485635 kcal Electronic energy + Delta-G solvation = -28205.486687 eV Core-core repulsion = 24254.549513 eV Total energy + Delta-G solvation = -3950.937174 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.67738 -40.43902 -38.93004 -37.59965 -35.91574 -34.86591 -32.91519 -32.36988 -30.49837 -28.58097 -28.25374 -27.19665 -27.00165 -24.95450 -23.42192 -22.57290 -21.75481 -20.47000 -19.53715 -18.98308 -18.24685 -17.86182 -17.07876 -17.00044 -16.59974 -16.19714 -15.72094 -15.28928 -15.02563 -14.61980 -14.09062 -13.78360 -13.55850 -13.31120 -13.14120 -12.91186 -12.54302 -11.89395 -11.66618 -11.59462 -11.43057 -11.12838 -11.04375 -11.00698 -10.96048 -10.84875 -10.82429 -10.72519 -10.61573 -10.52804 -10.42466 -10.34009 -10.01445 -9.73734 -9.42521 -8.96498 -8.64382 -7.42153 -6.25918 -4.31132 0.46498 1.33689 1.88843 1.99207 2.97253 3.15754 3.22064 3.23615 3.32103 3.80016 4.23507 4.53121 4.72792 4.75855 4.80067 4.88665 5.04043 5.07136 5.12543 5.43192 5.55021 5.64585 5.66564 5.71189 5.72145 5.73658 5.81216 5.86145 5.98300 6.03366 6.08285 6.08742 6.23625 6.38689 6.45290 6.70752 6.85108 6.90904 7.08102 7.17748 7.42504 7.63037 7.79130 7.95273 8.18936 8.26071 8.70633 9.32593 10.80409 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011125 B = 0.005216 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.333019 B = 5366.727921 C = 7286.861529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.279 6.279 3 C 0.440 3.560 4 N -0.559 5.559 5 C 0.485 3.515 6 N -0.550 5.550 7 C 0.248 3.752 8 C -0.522 4.522 9 H 0.059 0.941 10 C 0.067 3.933 11 N -0.890 5.890 12 Si 0.893 3.107 13 H -0.276 1.276 14 H -0.286 1.286 15 H -0.276 1.276 16 C 0.141 3.859 17 C -0.148 4.148 18 C -0.120 4.120 19 C -0.121 4.121 20 C -0.134 4.134 21 C -0.282 4.282 22 C 0.047 3.953 23 C -0.205 4.205 24 N 0.063 4.937 25 O -0.214 6.214 26 O -0.166 6.166 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.098 0.902 30 H 0.040 0.960 31 H 0.045 0.955 32 H 0.266 0.734 33 H 0.085 0.915 34 H 0.120 0.880 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.074 0.926 42 H 0.149 0.851 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.516 4.523 -0.913 9.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.182 6.182 3 C 0.252 3.748 4 N -0.295 5.295 5 C 0.242 3.758 6 N -0.251 5.251 7 C 0.130 3.870 8 C -0.561 4.561 9 H 0.077 0.923 10 C -0.136 4.136 11 N -0.528 5.528 12 Si 0.720 3.280 13 H -0.202 1.202 14 H -0.211 1.211 15 H -0.202 1.202 16 C 0.037 3.963 17 C -0.186 4.186 18 C -0.158 4.158 19 C -0.159 4.159 20 C -0.173 4.173 21 C -0.308 4.308 22 C 0.022 3.978 23 C -0.298 4.298 24 N 0.571 4.429 25 O -0.416 6.416 26 O -0.381 6.381 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.116 0.884 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.138 0.862 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.092 0.908 42 H 0.166 0.834 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 7.034 4.985 -1.004 8.679 hybrid contribution 0.160 -0.281 0.913 0.969 sum 7.194 4.704 -0.091 8.596 Atomic orbital electron populations 1.23051 0.75867 1.03070 1.04006 1.86502 1.23958 1.22761 1.84986 1.19085 0.86081 0.86002 0.83677 1.67432 1.36954 0.96587 1.28499 1.18343 0.87524 0.86196 0.83725 1.47869 1.10019 1.01773 1.65469 1.19449 0.71659 0.98450 0.97479 1.21254 0.91579 1.50448 0.92779 0.92296 1.24877 0.97355 0.94945 0.96442 1.69900 1.07782 1.49303 1.25820 0.86640 0.78641 0.78948 0.83740 1.20174 1.21114 1.20182 1.21917 0.97205 0.81642 0.95546 1.23063 1.05124 0.94145 0.96294 1.22418 1.01006 0.96699 0.95713 1.22312 1.00743 0.96886 0.95910 1.22543 1.00267 0.96638 0.97841 1.21341 0.92195 0.99476 1.17744 1.20807 1.01284 0.88311 0.87447 1.20697 0.88455 0.85889 1.34713 1.43097 1.00715 1.02324 0.96731 1.94446 0.96295 1.94091 1.56772 1.94539 1.74304 1.15296 1.53972 0.91078 0.91474 0.88398 0.94194 0.93718 0.92470 0.89745 0.86171 0.92156 0.92242 0.91498 0.92121 0.90960 0.91602 0.90777 0.83379 0.82471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.38 101.05 1.05 1.61 16 2 O -0.28 -5.11 8.50 -40.82 -0.35 -5.46 16 3 C 0.44 8.24 7.47 -17.14 -0.13 8.12 16 4 N -0.56 -10.91 8.12 -12.51 -0.10 -11.01 16 5 C 0.48 8.58 7.31 -155.01 -1.13 7.44 16 6 N -0.55 -9.78 2.46 -166.36 -0.41 -10.19 16 7 C 0.25 5.42 4.29 -5.19 -0.02 5.39 16 8 C -0.52 -12.53 7.21 -34.44 -0.25 -12.77 16 9 H 0.06 1.45 7.61 -52.48 -0.40 1.05 16 10 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 11 N -0.89 -23.44 13.29 55.43 0.74 -22.70 16 12 Si 0.89 19.84 29.54 -169.99 -5.02 14.82 16 13 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 14 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 15 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 16 C 0.14 2.01 3.13 -66.81 -0.21 1.80 16 17 C -0.15 -2.20 6.31 -25.07 -0.16 -2.36 16 18 C -0.12 -1.47 6.91 -24.74 -0.17 -1.64 16 19 C -0.12 -1.49 6.83 -25.07 -0.17 -1.66 16 20 C -0.13 -1.71 6.04 -25.61 -0.15 -1.86 16 21 C -0.28 -4.02 9.24 -39.21 -0.36 -4.39 16 22 C 0.05 0.68 9.66 -39.36 -0.38 0.30 16 23 C -0.20 -3.60 6.89 -79.62 -0.55 -4.15 16 24 N 0.06 1.17 4.45 34.12 0.15 1.32 16 25 O -0.21 -3.90 18.52 -29.46 -0.55 -4.44 16 26 O -0.17 -3.27 17.26 -36.48 -0.63 -3.90 16 27 H 0.07 1.24 8.10 -51.93 -0.42 0.82 16 28 H 0.07 1.12 8.10 -51.92 -0.42 0.70 16 29 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.04 0.91 7.28 -51.93 -0.38 0.53 16 31 H 0.04 1.10 7.57 -51.93 -0.39 0.71 16 32 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 33 H 0.08 1.02 5.58 -51.93 -0.29 0.73 16 34 H 0.12 2.25 4.91 -51.93 -0.26 2.00 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 41 H 0.07 1.07 7.34 -51.93 -0.38 0.69 16 42 H 0.15 1.66 5.99 -52.48 -0.31 1.34 16 43 H 0.16 1.83 7.69 -52.49 -0.40 1.43 16 LS Contribution 356.04 15.07 5.37 5.37 Total: -1.00 -27.64 356.04 -9.29 -36.93 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -5.75 Total: 1.86 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -2.74 Total: -2.59 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: 0.38 Total: -42.58 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -1.52 Total: -13.81 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -27.64 -9.29 -36.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166535258.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.445 kcal (2) G-P(sol) polarization free energy of solvation -27.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds