Wall clock time and date at job start Tue Mar 31 2020 13:43:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35675 * 117.00016 * 2 1 4 4 N 1.32356 * 119.63716 * 359.97438 * 3 2 1 5 5 C 1.32461 * 121.55103 * 180.02562 * 4 3 2 6 6 N 1.38996 * 119.67134 * 179.97438 * 5 4 3 7 7 C 1.46501 * 119.99741 * 348.81728 * 6 5 4 8 8 C 1.50707 * 109.47156 * 89.99954 * 7 6 5 9 9 H 1.08005 * 119.99621 * 359.97438 * 8 7 6 10 10 C 1.37876 * 119.99793 * 179.97438 * 8 7 6 11 11 N 1.31512 * 120.00116 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99774 * 179.97438 * 10 8 7 13 13 H 1.48507 * 109.47294 * 59.99857 * 12 10 8 14 14 H 1.48497 * 109.47277 * 179.97438 * 12 10 8 15 15 H 1.48499 * 109.47194 * 300.00018 * 12 10 8 16 16 C 1.46495 * 119.99856 * 168.81465 * 6 5 4 17 17 C 1.54275 * 110.03074 * 232.35454 * 16 6 5 18 18 C 1.54887 * 104.19463 * 217.10475 * 17 16 6 19 19 C 1.54889 * 102.75058 * 37.94582 * 18 17 16 20 20 C 1.53877 * 110.03279 * 115.19405 * 16 6 5 21 21 C 1.39027 * 120.65855 * 0.02562 * 5 4 3 22 22 C 1.38450 * 119.21956 * 0.02562 * 21 5 4 23 23 C 1.38630 * 118.56897 * 0.26747 * 22 21 5 24 24 N 1.48009 * 120.35895 * 179.72535 * 23 22 21 25 25 O 1.21802 * 120.00418 * 0.02562 * 24 23 22 26 26 O 1.21801 * 119.99785 * 180.02562 * 24 23 22 27 27 H 1.08997 * 109.47444 * 300.00511 * 1 2 3 28 28 H 1.09009 * 109.46893 * 60.00644 * 1 2 3 29 29 H 1.08994 * 109.46916 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46794 * 209.99532 * 7 6 5 31 31 H 1.08997 * 109.47305 * 329.99671 * 7 6 5 32 32 H 0.97003 * 119.99624 * 180.02562 * 11 10 8 33 33 H 1.08995 * 110.02027 * 353.79537 * 16 6 5 34 34 H 1.08994 * 110.48456 * 335.78956 * 17 16 6 35 35 H 1.09002 * 110.48199 * 98.42948 * 17 16 6 36 36 H 1.09000 * 110.75950 * 279.62705 * 18 17 16 37 37 H 1.09003 * 110.91016 * 156.33298 * 18 17 16 38 38 H 1.09002 * 110.48678 * 203.37878 * 19 18 17 39 39 H 1.09001 * 110.48470 * 80.72834 * 19 18 17 40 40 H 1.09000 * 110.02592 * 238.56883 * 20 16 6 41 41 H 1.08998 * 110.03252 * 359.94656 * 20 16 6 42 42 H 1.08003 * 120.38409 * 180.02562 * 21 5 4 43 43 H 1.07997 * 120.71545 * 180.02562 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 7 1.3171 2.3143 -0.0005 5 6 1.8787 3.5140 -0.0010 6 7 1.0766 4.6492 -0.0021 7 6 -0.3625 4.5290 -0.2487 8 6 -1.0816 4.3297 1.0606 9 1 -0.5225 4.2955 1.9840 10 6 -2.4533 4.1910 1.0796 11 7 -3.1341 4.2331 -0.0448 12 14 -3.3445 3.9432 2.7024 13 1 -3.0892 5.1061 3.5901 14 1 -4.8034 3.8227 2.4526 15 1 -2.8496 2.7044 3.3549 16 6 1.6704 5.9657 0.2434 17 6 0.9052 6.6884 1.3714 18 6 0.8922 8.1732 0.9307 19 6 0.6968 8.0730 -0.6026 20 6 1.5378 6.8461 -1.0116 21 6 3.2624 3.6490 -0.0016 22 6 4.0524 2.5120 -0.0021 23 6 3.4308 1.2728 -0.0078 24 7 4.2370 0.0316 -0.0147 25 8 5.4533 0.0953 -0.0150 26 8 3.6840 -1.0537 -0.0201 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.7260 5.4378 -0.7282 31 1 -0.5495 3.6750 -0.8997 32 1 -4.0991 4.1359 -0.0313 33 1 2.7206 5.8568 0.5139 34 1 -0.1119 6.3045 1.4491 35 1 1.4297 6.5768 2.3204 36 1 1.8404 8.6552 1.1687 37 1 0.0621 8.7086 1.3917 38 1 1.0692 8.9718 -1.0941 39 1 -0.3540 7.9127 -0.8436 40 1 2.5237 7.1651 -1.3497 41 1 1.0325 6.2935 -1.8037 42 1 3.7156 4.6293 -0.0016 43 1 5.1296 2.5887 -0.0022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166535258.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:20 Heat of formation + Delta-G solvation = -14.139133 kcal Electronic energy + Delta-G solvation = -28206.078747 eV Core-core repulsion = 24254.549513 eV Total energy + Delta-G solvation = -3951.529234 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.09282 -41.80634 -40.21035 -38.86037 -37.36141 -36.21964 -34.73392 -33.70160 -31.91055 -29.90677 -29.48411 -28.46919 -28.42693 -26.48504 -24.93258 -23.98349 -23.15950 -21.49272 -20.78090 -20.35106 -19.67754 -19.19161 -18.65460 -18.49255 -18.22437 -17.48712 -17.14227 -16.71264 -16.22685 -16.08415 -15.35576 -15.21294 -14.83989 -14.53806 -14.42664 -14.28817 -13.97265 -13.37553 -13.27857 -12.90075 -12.84751 -12.69445 -12.56860 -12.50432 -12.31568 -12.22414 -12.12815 -12.08298 -11.95489 -11.83930 -11.77176 -11.45219 -11.39094 -11.30439 -10.80757 -10.60185 -10.34772 -8.84292 -8.17514 -6.29574 -0.93226 0.08640 0.49156 0.60101 1.34983 1.37701 1.43393 1.66575 1.96739 2.36333 2.47473 3.10040 3.22351 3.45960 3.61328 3.71562 3.76723 3.89162 4.07159 4.32688 4.34283 4.37378 4.49742 4.58461 4.63178 4.66484 4.70368 4.71830 4.81838 4.87927 4.99611 5.06689 5.13774 5.21562 5.26911 5.39005 5.43091 5.44840 5.61954 5.67464 5.78787 5.98999 6.07042 6.28918 6.74207 6.79080 6.88280 7.36509 8.85363 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011125 B = 0.005216 C = 0.003842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.333019 B = 5366.727921 C = 7286.861529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.291 6.291 3 C 0.423 3.577 4 N -0.593 5.593 5 C 0.465 3.535 6 N -0.556 5.556 7 C 0.273 3.727 8 C -0.512 4.512 9 H 0.050 0.950 10 C 0.021 3.979 11 N -0.922 5.922 12 Si 0.944 3.056 13 H -0.268 1.268 14 H -0.285 1.285 15 H -0.280 1.280 16 C 0.135 3.865 17 C -0.152 4.152 18 C -0.111 4.111 19 C -0.120 4.120 20 C -0.130 4.130 21 C -0.257 4.257 22 C 0.058 3.942 23 C -0.212 4.212 24 N 0.062 4.938 25 O -0.188 6.188 26 O -0.211 6.211 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.132 0.868 30 H 0.025 0.975 31 H 0.009 0.991 32 H 0.264 0.736 33 H 0.120 0.880 34 H 0.074 0.926 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.088 0.912 39 H 0.040 0.960 40 H 0.103 0.897 41 H 0.048 0.952 42 H 0.191 0.809 43 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.509 6.341 -0.299 13.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.194 6.194 3 C 0.236 3.764 4 N -0.329 5.329 5 C 0.224 3.776 6 N -0.258 5.258 7 C 0.152 3.848 8 C -0.551 4.551 9 H 0.068 0.932 10 C -0.178 4.178 11 N -0.562 5.562 12 Si 0.771 3.229 13 H -0.193 1.193 14 H -0.210 1.210 15 H -0.206 1.206 16 C 0.033 3.967 17 C -0.191 4.191 18 C -0.149 4.149 19 C -0.158 4.158 20 C -0.168 4.168 21 C -0.282 4.282 22 C 0.033 3.967 23 C -0.305 4.305 24 N 0.568 4.432 25 O -0.398 6.398 26 O -0.415 6.415 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.150 0.850 30 H 0.043 0.957 31 H 0.027 0.973 32 H 0.073 0.927 33 H 0.138 0.862 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.080 0.920 38 H 0.106 0.894 39 H 0.058 0.942 40 H 0.121 0.879 41 H 0.067 0.933 42 H 0.208 0.792 43 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 9.978 6.750 -0.379 12.053 hybrid contribution -0.668 -0.786 0.718 1.257 sum 9.310 5.964 0.339 11.062 Atomic orbital electron populations 1.23070 0.75235 1.04725 1.02286 1.86499 1.24612 1.23149 1.85135 1.19288 0.86823 0.85867 0.84467 1.67347 1.38455 0.97685 1.29413 1.18819 0.89164 0.85462 0.84183 1.47758 1.08446 1.03382 1.66248 1.18781 0.74486 0.95970 0.95544 1.21403 0.91640 1.48776 0.93252 0.93205 1.25517 0.98278 0.95222 0.98819 1.70001 1.07783 1.51043 1.27410 0.85820 0.77601 0.78719 0.80788 1.19321 1.20994 1.20578 1.22282 0.98490 0.79880 0.96023 1.22989 1.02591 0.96124 0.97352 1.22399 1.02506 0.94853 0.95162 1.22303 0.99034 0.98012 0.96464 1.22547 1.01941 0.96005 0.96332 1.21655 0.90078 1.01304 1.15188 1.21260 1.03021 0.86635 0.85800 1.20994 0.88046 0.86437 1.35068 1.43251 1.00812 1.02576 0.96515 1.94406 0.96326 1.94085 1.54995 1.94555 1.74470 1.15973 1.56469 0.93059 0.92818 0.85039 0.95698 0.97302 0.92674 0.86207 0.90736 0.91221 0.89008 0.92038 0.89364 0.94150 0.87891 0.93300 0.79159 0.78656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.39 10.38 113.37 1.18 2.57 16 2 O -0.29 -10.97 8.50 -68.80 -0.58 -11.56 16 3 C 0.42 15.99 7.47 84.73 0.63 16.62 16 4 N -0.59 -23.54 8.12 -306.31 -2.49 -26.03 16 5 C 0.46 15.94 7.31 133.02 0.97 16.91 16 6 N -0.56 -19.55 2.46 -680.24 -1.67 -21.23 16 7 C 0.27 12.44 4.29 85.63 0.37 12.81 16 8 C -0.51 -25.50 7.21 25.60 0.18 -25.31 16 9 H 0.05 2.53 7.61 -2.91 -0.02 2.51 16 10 C 0.02 1.10 5.46 84.65 0.46 1.56 16 11 N -0.92 -50.68 13.29 21.45 0.28 -50.39 16 12 Si 0.94 41.73 29.54 68.60 2.03 43.76 16 13 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 14 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 15 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 16 C 0.14 3.52 3.13 45.72 0.14 3.66 16 17 C -0.15 -4.30 6.31 31.67 0.20 -4.10 16 18 C -0.11 -2.43 6.91 31.88 0.22 -2.21 16 19 C -0.12 -2.74 6.83 31.67 0.22 -2.52 16 20 C -0.13 -2.97 6.04 31.32 0.19 -2.78 16 21 C -0.26 -6.34 9.24 22.51 0.21 -6.13 16 22 C 0.06 1.45 9.66 22.41 0.22 1.66 16 23 C -0.21 -7.13 6.89 36.59 0.25 -6.88 16 24 N 0.06 2.26 4.45 -45.96 -0.20 2.05 16 25 O -0.19 -6.35 18.52 18.88 0.35 -6.00 16 26 O -0.21 -8.35 17.26 25.60 0.44 -7.91 16 27 H 0.05 1.89 8.10 -2.39 -0.02 1.87 16 28 H 0.05 1.91 8.10 -2.38 -0.02 1.89 16 29 H 0.13 3.40 8.14 -2.39 -0.02 3.38 16 30 H 0.03 1.21 7.28 -2.39 -0.02 1.19 16 31 H 0.01 0.47 7.57 -2.39 -0.02 0.45 16 32 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 33 H 0.12 2.25 5.58 -2.39 -0.01 2.24 16 34 H 0.07 2.84 4.91 -2.39 -0.01 2.83 16 35 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 37 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.05 1.38 7.34 -2.39 -0.02 1.36 16 42 H 0.19 3.02 5.99 -2.91 -0.02 3.00 16 43 H 0.20 3.42 7.69 -2.91 -0.02 3.39 16 Total: -1.00 -64.10 356.04 4.63 -59.47 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 1.04 Total: 11.97 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 5.44 Total: 5.86 kcal Atomic # 7 Polarization: -91.52 SS G_CDS: -4.08 Total: -95.60 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: 0.21 Total: -25.47 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -64.10 4.63 -59.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166535258.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.334 kcal (2) G-P(sol) polarization free energy of solvation -64.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds