Wall clock time and date at job start Tue Mar 31 2020 12:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42896 * 109.47553 * 2 1 4 4 C 1.35674 * 117.00338 * 180.02562 * 3 2 1 5 5 N 1.32346 * 119.63656 * 359.97438 * 4 3 2 6 6 C 1.32469 * 121.55110 * 180.02562 * 5 4 3 7 7 N 1.38994 * 119.66989 * 179.97438 * 6 5 4 8 8 C 1.46852 * 110.99743 * 124.20921 * 7 6 5 9 9 C 1.53038 * 109.51991 * 174.16119 * 8 7 6 10 10 C 1.53121 * 109.28145 * 59.17795 * 9 8 7 11 11 C 1.53116 * 109.15919 * 302.34666 * 10 9 8 12 12 H 1.09002 * 109.50351 * 297.71191 * 11 10 9 13 13 C 1.50700 * 109.53480 * 177.61205 * 11 10 9 14 14 H 1.07992 * 120.00329 * 240.09746 * 13 11 10 15 15 C 1.37881 * 119.99818 * 60.09632 * 13 11 10 16 16 N 1.31518 * 119.99934 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00022 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47228 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.46940 * 120.00173 * 17 15 13 20 20 H 1.48504 * 109.47070 * 240.00090 * 17 15 13 21 21 C 1.46851 * 111.00127 * 359.97438 * 7 6 5 22 22 C 1.39020 * 120.65717 * 0.25391 * 6 5 4 23 23 C 1.38456 * 119.21965 * 359.49983 * 22 6 5 24 24 C 1.38630 * 118.56928 * 0.49151 * 23 22 6 25 25 N 1.48009 * 120.36340 * 179.73253 * 24 23 22 26 26 O 1.21796 * 119.99714 * 0.02562 * 25 24 23 27 27 O 1.21800 * 119.99980 * 180.02562 * 25 24 23 28 28 H 1.08999 * 109.46397 * 60.00134 * 1 2 3 29 29 H 1.09000 * 109.47449 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47008 * 300.00804 * 1 2 3 31 31 H 1.09000 * 109.47008 * 239.99196 * 2 1 3 32 32 H 1.09004 * 109.46995 * 119.99486 * 2 1 3 33 33 H 1.08996 * 109.46331 * 294.17461 * 8 7 6 34 34 H 1.08998 * 109.46031 * 54.15224 * 8 7 6 35 35 H 1.09004 * 109.50259 * 179.12052 * 9 8 7 36 36 H 1.09005 * 109.50470 * 299.23445 * 9 8 7 37 37 H 1.08997 * 109.52457 * 182.43793 * 10 9 8 38 38 H 1.09000 * 109.52188 * 62.25069 * 10 9 8 39 39 H 0.97001 * 119.99543 * 179.97438 * 16 15 13 40 40 H 1.08999 * 109.46045 * 65.82495 * 21 7 6 41 41 H 1.08998 * 109.45058 * 305.85207 * 21 7 6 42 42 H 1.07997 * 120.39195 * 179.71823 * 22 6 5 43 43 H 1.07998 * 120.71855 * 180.24104 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3515 1.5249 -0.0005 5 7 4.1510 0.4703 -0.0005 6 6 5.4693 0.5998 -0.0005 7 7 6.2722 -0.5348 0.0000 8 6 7.2054 -0.5196 -1.1338 9 6 8.1672 -1.7046 -1.0202 10 6 7.3645 -3.0085 -1.0131 11 6 6.3668 -2.9780 0.1479 12 1 6.9085 -2.9167 1.0918 13 6 5.5317 -4.2323 0.1277 14 1 4.4591 -4.1653 0.0218 15 6 6.1372 -5.4656 0.2445 16 7 7.4434 -5.5472 0.3739 17 14 5.1022 -7.0204 0.2187 18 1 3.6701 -6.6593 0.0633 19 1 5.5228 -7.8762 -0.9196 20 1 5.2909 -7.7618 1.4915 21 6 5.4571 -1.7563 0.0012 22 6 6.0578 1.8593 0.0047 23 6 5.2492 2.9832 -0.0005 24 6 3.8737 2.8103 -0.0005 25 7 2.9721 3.9841 0.0000 26 8 3.4377 5.1095 -0.0002 27 8 1.7646 3.8245 0.0005 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 1.8933 -0.5140 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 6.6456 -0.5943 -2.0660 34 1 7.7729 0.4109 -1.1245 35 1 8.8497 -1.7020 -1.8702 36 1 8.7374 -1.6232 -0.0948 37 1 8.0424 -3.8529 -0.8889 38 1 6.8247 -3.1090 -1.9547 39 1 7.8693 -6.4148 0.4564 40 1 4.9051 -1.8254 -0.9362 41 1 4.7552 -1.7235 0.8344 42 1 7.1331 1.9600 0.0093 43 1 5.6806 3.9733 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166742855.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:09 Heat of formation + Delta-G solvation = -1.425218 kcal Electronic energy + Delta-G solvation = -27704.218445 eV Core-core repulsion = 23753.240528 eV Total energy + Delta-G solvation = -3950.977917 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.13128 -41.01907 -39.26971 -37.69574 -36.30420 -34.30918 -33.10600 -32.34083 -31.44681 -30.48817 -29.75243 -26.21884 -25.42748 -24.64960 -23.51161 -22.87334 -21.88608 -21.52942 -19.42256 -19.12097 -18.53128 -18.49447 -17.48294 -17.26257 -16.44493 -16.33840 -15.96097 -14.85833 -14.72401 -14.52380 -14.14168 -13.96697 -13.79309 -13.61845 -13.23350 -12.74558 -12.67625 -12.64832 -12.45894 -12.06711 -11.69182 -11.40481 -11.14910 -11.12567 -11.01834 -10.97547 -10.92955 -10.83007 -10.65388 -10.40727 -10.11296 -10.09878 -9.78003 -9.54047 -9.33104 -8.93503 -8.48867 -8.25950 -6.14762 -4.21376 -0.08787 0.84535 1.37175 1.53519 2.53561 3.12330 3.19986 3.28941 3.31614 3.45509 4.05086 4.25329 4.33052 4.54838 4.65314 4.92333 4.94269 5.09753 5.16884 5.26709 5.29486 5.33368 5.36915 5.52644 5.59280 5.69859 5.74087 5.87972 5.95015 6.10265 6.16597 6.29413 6.41529 6.44844 6.54278 6.64005 6.81251 6.96466 7.09108 7.28726 7.46754 7.57996 7.80252 7.84903 7.93850 8.24663 8.81753 9.44256 10.91634 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015682 B = 0.003726 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.050817 B = 7512.452228 C = 9124.265255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.274 6.274 4 C 0.425 3.575 5 N -0.564 5.564 6 C 0.413 3.587 7 N -0.465 5.465 8 C 0.066 3.934 9 C -0.121 4.121 10 C -0.116 4.116 11 C 0.051 3.949 12 H 0.036 0.964 13 C -0.516 4.516 14 H 0.057 0.943 15 C 0.065 3.935 16 N -0.887 5.887 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.283 1.283 21 C 0.072 3.928 22 C -0.232 4.232 23 C 0.037 3.963 24 C -0.171 4.171 25 N 0.053 4.947 26 O -0.195 6.195 27 O -0.149 6.149 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.097 0.903 38 H 0.035 0.965 39 H 0.261 0.739 40 H 0.045 0.955 41 H 0.076 0.924 42 H 0.159 0.841 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.353 12.565 -2.653 13.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.017 4.017 3 O -0.178 6.178 4 C 0.240 3.760 5 N -0.297 5.297 6 C 0.178 3.822 7 N -0.178 5.178 8 C -0.059 4.059 9 C -0.158 4.158 10 C -0.154 4.154 11 C 0.032 3.968 12 H 0.054 0.946 13 C -0.555 4.555 14 H 0.075 0.925 15 C -0.137 4.137 16 N -0.526 5.526 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.209 1.209 21 C -0.053 4.053 22 C -0.255 4.255 23 C 0.012 3.988 24 C -0.261 4.261 25 N 0.566 4.434 26 O -0.401 6.401 27 O -0.368 6.368 28 H 0.086 0.914 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.116 0.884 38 H 0.054 0.946 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.094 0.906 42 H 0.177 0.823 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -3.018 11.171 -2.225 11.784 hybrid contribution -0.649 -0.101 -0.437 0.789 sum -3.667 11.071 -2.662 11.962 Atomic orbital electron populations 1.21807 0.92272 1.03072 1.03614 1.22881 0.95418 0.79820 1.03534 1.86532 1.14769 1.31816 1.84671 1.19162 0.85515 0.86876 0.84429 1.67834 1.05650 1.30031 1.26176 1.20237 0.86588 0.91946 0.83407 1.58989 1.17156 1.02262 1.39363 1.22356 0.93758 1.00927 0.88821 1.21775 0.97198 0.95251 1.01626 1.21748 0.99366 0.95640 0.98653 1.18783 0.92669 0.89878 0.95474 0.94599 1.21067 0.93382 0.90388 1.50625 0.92515 1.24922 0.94944 0.99026 0.94801 1.69877 1.08482 1.24548 1.49669 0.86532 0.80565 0.83210 0.77684 1.19762 1.20981 1.20936 1.22488 0.95222 0.86251 1.01296 1.21500 1.02174 0.89778 1.12075 1.21097 0.88924 1.01412 0.87408 1.20947 0.91265 0.83835 1.30055 1.43099 1.01444 1.01613 0.97206 1.94490 1.80363 1.09440 1.55784 1.94571 0.96524 1.92608 1.53081 0.91443 0.89961 0.91395 0.90828 0.90694 0.93333 0.90563 0.92073 0.91422 0.88431 0.94583 0.92910 0.93657 0.90603 0.82294 0.81589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.28 37.16 0.38 -1.09 16 2 C 0.06 0.73 6.03 37.16 0.22 0.95 16 3 O -0.27 -4.05 8.14 -40.82 -0.33 -4.38 16 4 C 0.42 6.45 7.47 -17.15 -0.13 6.32 16 5 N -0.56 -8.81 7.53 -12.51 -0.09 -8.90 16 6 C 0.41 6.08 6.40 -155.01 -0.99 5.09 16 7 N -0.46 -7.50 4.68 -173.25 -0.81 -8.31 16 8 C 0.07 0.92 5.25 -3.83 -0.02 0.90 16 9 C -0.12 -1.93 6.09 -26.65 -0.16 -2.10 16 10 C -0.12 -2.41 5.03 -26.61 -0.13 -2.55 16 11 C 0.05 1.15 2.26 -91.70 -0.21 0.94 16 12 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 13 C -0.52 -13.10 8.56 -34.44 -0.29 -13.40 16 14 H 0.06 1.43 7.74 -52.49 -0.41 1.03 16 15 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 16 N -0.89 -23.68 11.36 55.43 0.63 -23.05 16 17 Si 0.89 20.14 29.54 -169.99 -5.02 15.12 16 18 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 C 0.07 1.39 3.87 -3.84 -0.01 1.37 16 22 C -0.23 -2.68 9.18 -39.21 -0.36 -3.04 16 23 C 0.04 0.43 9.66 -39.36 -0.38 0.05 16 24 C -0.17 -2.45 6.89 -79.62 -0.55 -3.00 16 25 N 0.05 0.83 4.45 34.12 0.15 0.98 16 26 O -0.19 -3.01 18.52 -29.46 -0.55 -3.55 16 27 O -0.15 -2.50 17.26 -36.48 -0.63 -3.13 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 32 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.83 6.68 -51.93 -0.35 0.49 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.10 2.32 6.16 -51.93 -0.32 2.00 16 38 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.26 6.67 8.31 -40.82 -0.34 6.34 16 40 H 0.05 0.89 8.11 -51.93 -0.42 0.47 16 41 H 0.08 1.52 7.70 -51.93 -0.40 1.12 16 42 H 0.16 1.42 7.15 -52.49 -0.38 1.04 16 43 H 0.17 1.45 7.69 -52.49 -0.40 1.04 16 LS Contribution 355.95 15.07 5.36 5.36 Total: -1.00 -27.99 355.95 -10.05 -38.04 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -6.03 Total: -0.21 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -2.73 Total: -7.96 kcal Atomic # 7 Polarization: -39.16 SS G_CDS: -0.12 Total: -39.28 kcal Atomic # 8 Polarization: -9.56 SS G_CDS: -1.51 Total: -11.07 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -27.99 -10.05 -38.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166742855.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.614 kcal (2) G-P(sol) polarization free energy of solvation -27.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds