Wall clock time and date at job start Tue Mar 31 2020 12:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42896 * 109.47553 * 2 1 4 4 C 1.35674 * 117.00338 * 180.02562 * 3 2 1 5 5 N 1.32346 * 119.63656 * 359.97438 * 4 3 2 6 6 C 1.32469 * 121.55110 * 180.02562 * 5 4 3 7 7 N 1.38994 * 119.66989 * 179.97438 * 6 5 4 8 8 C 1.46852 * 110.99743 * 124.20921 * 7 6 5 9 9 C 1.53038 * 109.51991 * 174.16119 * 8 7 6 10 10 C 1.53121 * 109.28145 * 59.17795 * 9 8 7 11 11 C 1.53116 * 109.15919 * 302.34666 * 10 9 8 12 12 H 1.09002 * 109.50351 * 297.71191 * 11 10 9 13 13 C 1.50700 * 109.53480 * 177.61205 * 11 10 9 14 14 H 1.07992 * 120.00329 * 240.09746 * 13 11 10 15 15 C 1.37881 * 119.99818 * 60.09632 * 13 11 10 16 16 N 1.31518 * 119.99934 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 120.00022 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47228 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.46940 * 120.00173 * 17 15 13 20 20 H 1.48504 * 109.47070 * 240.00090 * 17 15 13 21 21 C 1.46851 * 111.00127 * 359.97438 * 7 6 5 22 22 C 1.39020 * 120.65717 * 0.25391 * 6 5 4 23 23 C 1.38456 * 119.21965 * 359.49983 * 22 6 5 24 24 C 1.38630 * 118.56928 * 0.49151 * 23 22 6 25 25 N 1.48009 * 120.36340 * 179.73253 * 24 23 22 26 26 O 1.21796 * 119.99714 * 0.02562 * 25 24 23 27 27 O 1.21800 * 119.99980 * 180.02562 * 25 24 23 28 28 H 1.08999 * 109.46397 * 60.00134 * 1 2 3 29 29 H 1.09000 * 109.47449 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47008 * 300.00804 * 1 2 3 31 31 H 1.09000 * 109.47008 * 239.99196 * 2 1 3 32 32 H 1.09004 * 109.46995 * 119.99486 * 2 1 3 33 33 H 1.08996 * 109.46331 * 294.17461 * 8 7 6 34 34 H 1.08998 * 109.46031 * 54.15224 * 8 7 6 35 35 H 1.09004 * 109.50259 * 179.12052 * 9 8 7 36 36 H 1.09005 * 109.50470 * 299.23445 * 9 8 7 37 37 H 1.08997 * 109.52457 * 182.43793 * 10 9 8 38 38 H 1.09000 * 109.52188 * 62.25069 * 10 9 8 39 39 H 0.97001 * 119.99543 * 179.97438 * 16 15 13 40 40 H 1.08999 * 109.46045 * 65.82495 * 21 7 6 41 41 H 1.08998 * 109.45058 * 305.85207 * 21 7 6 42 42 H 1.07997 * 120.39195 * 179.71823 * 22 6 5 43 43 H 1.07998 * 120.71855 * 180.24104 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.3515 1.5249 -0.0005 5 7 4.1510 0.4703 -0.0005 6 6 5.4693 0.5998 -0.0005 7 7 6.2722 -0.5348 0.0000 8 6 7.2054 -0.5196 -1.1338 9 6 8.1672 -1.7046 -1.0202 10 6 7.3645 -3.0085 -1.0131 11 6 6.3668 -2.9780 0.1479 12 1 6.9085 -2.9167 1.0918 13 6 5.5317 -4.2323 0.1277 14 1 4.4591 -4.1653 0.0218 15 6 6.1372 -5.4656 0.2445 16 7 7.4434 -5.5472 0.3739 17 14 5.1022 -7.0204 0.2187 18 1 3.6701 -6.6593 0.0633 19 1 5.5228 -7.8762 -0.9196 20 1 5.2909 -7.7618 1.4915 21 6 5.4571 -1.7563 0.0012 22 6 6.0578 1.8593 0.0047 23 6 5.2492 2.9832 -0.0005 24 6 3.8737 2.8103 -0.0005 25 7 2.9721 3.9841 0.0000 26 8 3.4377 5.1095 -0.0002 27 8 1.7646 3.8245 0.0005 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 1.8933 -0.5140 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 6.6456 -0.5943 -2.0660 34 1 7.7729 0.4109 -1.1245 35 1 8.8497 -1.7020 -1.8702 36 1 8.7374 -1.6232 -0.0948 37 1 8.0424 -3.8529 -0.8889 38 1 6.8247 -3.1090 -1.9547 39 1 7.8693 -6.4148 0.4564 40 1 4.9051 -1.8254 -0.9362 41 1 4.7552 -1.7235 0.8344 42 1 7.1331 1.9600 0.0093 43 1 5.6806 3.9733 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166742855.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:08 Heat of formation + Delta-G solvation = -16.344112 kcal Electronic energy + Delta-G solvation = -27704.865377 eV Core-core repulsion = 23753.240528 eV Total energy + Delta-G solvation = -3951.624849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 41.77 seconds Orbital eigenvalues (eV) -43.28917 -42.17353 -40.46471 -38.92332 -37.50597 -35.87339 -34.39246 -33.59370 -32.64010 -31.94623 -30.99203 -27.45401 -27.13893 -25.81945 -24.78157 -24.03414 -23.04062 -22.91248 -20.63766 -20.54371 -19.75792 -19.64410 -18.69819 -18.65546 -17.86440 -17.53622 -17.24089 -16.51807 -16.00257 -15.75300 -15.32575 -15.09491 -14.91166 -14.81172 -14.61087 -14.31502 -14.12952 -13.65507 -13.50265 -13.33474 -12.90995 -12.78503 -12.64901 -12.59684 -12.57519 -12.27316 -12.18915 -11.98666 -11.92471 -11.85176 -11.74769 -11.45636 -11.24776 -11.06949 -10.78898 -10.55672 -10.40633 -9.44783 -8.12977 -6.25923 -1.22725 -0.14706 0.20910 0.39684 1.38113 1.41551 1.50858 1.51295 2.03269 2.29930 2.43312 2.95031 3.15637 3.20830 3.52098 3.69922 3.95287 3.97091 4.03130 4.08822 4.24219 4.32670 4.35501 4.43612 4.49658 4.57864 4.72593 4.76876 4.83624 4.87019 4.89952 4.95302 5.03305 5.12467 5.18985 5.29052 5.42310 5.51830 5.60492 5.74793 5.90486 5.98530 6.09780 6.30325 6.41191 6.62698 6.84336 7.42287 8.91885 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015682 B = 0.003726 C = 0.003068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.050817 B = 7512.452228 C = 9124.265255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.057 3.943 3 O -0.286 6.286 4 C 0.410 3.590 5 N -0.585 5.585 6 C 0.396 3.604 7 N -0.471 5.471 8 C 0.066 3.934 9 C -0.112 4.112 10 C -0.110 4.110 11 C 0.050 3.950 12 H 0.002 0.998 13 C -0.535 4.535 14 H 0.049 0.951 15 C 0.020 3.980 16 N -0.911 5.911 17 Si 0.949 3.051 18 H -0.269 1.269 19 H -0.280 1.280 20 H -0.282 1.282 21 C 0.095 3.905 22 C -0.209 4.209 23 C 0.052 3.948 24 C -0.178 4.178 25 N 0.052 4.948 26 O -0.174 6.174 27 O -0.191 6.191 28 H 0.070 0.930 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.049 0.951 34 H 0.123 0.877 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.027 0.973 39 H 0.261 0.739 40 H 0.036 0.964 41 H 0.058 0.942 42 H 0.198 0.802 43 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.407 14.486 -3.300 15.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.018 4.018 3 O -0.190 6.190 4 C 0.226 3.774 5 N -0.318 5.318 6 C 0.162 3.838 7 N -0.185 5.185 8 C -0.058 4.058 9 C -0.150 4.150 10 C -0.149 4.149 11 C 0.031 3.969 12 H 0.020 0.980 13 C -0.574 4.574 14 H 0.068 0.932 15 C -0.179 4.179 16 N -0.550 5.550 17 Si 0.775 3.225 18 H -0.194 1.194 19 H -0.205 1.205 20 H -0.208 1.208 21 C -0.031 4.031 22 C -0.232 4.232 23 C 0.027 3.973 24 C -0.268 4.268 25 N 0.563 4.437 26 O -0.387 6.387 27 O -0.399 6.399 28 H 0.089 0.911 29 H 0.118 0.882 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.141 0.859 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.046 0.954 39 H 0.070 0.930 40 H 0.054 0.946 41 H 0.077 0.923 42 H 0.215 0.785 43 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -2.155 13.068 -2.875 13.553 hybrid contribution -0.884 -0.639 -0.223 1.114 sum -3.039 12.429 -3.098 13.165 Atomic orbital electron populations 1.21816 0.90144 1.04285 1.03832 1.22982 0.97076 0.79089 1.02617 1.86540 1.14997 1.32710 1.84743 1.19321 0.85620 0.87281 0.85189 1.67736 1.06567 1.30775 1.26701 1.20460 0.86316 0.92596 0.84423 1.58995 1.17198 1.01357 1.40919 1.22486 0.93217 1.01960 0.88111 1.21658 0.97322 0.93308 1.02665 1.21539 0.98666 0.97504 0.97160 1.18674 0.93064 0.90570 0.94570 0.98014 1.21434 0.93458 0.92048 1.50430 0.93246 1.25610 0.95937 1.01691 0.94690 1.70001 1.09619 1.25034 1.50360 0.85643 0.79299 0.79924 0.77621 1.19376 1.20529 1.20782 1.21939 0.94334 0.86864 0.99996 1.21811 1.03870 0.87854 1.09711 1.21535 0.87297 1.03040 0.85457 1.21236 0.92222 0.82940 1.30397 1.43283 1.01504 1.01964 0.96911 1.94456 1.80175 1.09831 1.54268 1.94587 0.97202 1.92808 1.55352 0.91110 0.88207 0.91225 0.91564 0.91755 0.93260 0.85862 0.89257 0.91872 0.91792 0.95392 0.92953 0.94585 0.92341 0.78488 0.77990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 10.28 71.98 0.74 -2.06 16 2 C 0.06 1.47 6.03 71.98 0.43 1.90 16 3 O -0.29 -8.59 8.14 -68.79 -0.56 -9.15 16 4 C 0.41 12.24 7.47 84.74 0.63 12.87 16 5 N -0.58 -18.00 7.53 -306.32 -2.31 -20.30 16 6 C 0.40 10.81 6.40 133.02 0.85 11.66 16 7 N -0.47 -14.49 4.68 -702.06 -3.28 -17.78 16 8 C 0.07 1.65 5.25 86.32 0.45 2.10 16 9 C -0.11 -3.38 6.09 30.65 0.19 -3.20 16 10 C -0.11 -4.67 5.03 30.67 0.15 -4.51 16 11 C 0.05 2.34 2.26 -11.49 -0.03 2.32 16 12 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 13 C -0.54 -28.15 8.56 25.60 0.22 -27.93 16 14 H 0.05 2.59 7.74 -2.91 -0.02 2.57 16 15 C 0.02 1.07 5.30 84.66 0.45 1.52 16 16 N -0.91 -50.02 11.36 21.45 0.24 -49.78 16 17 Si 0.95 42.04 29.54 68.60 2.03 44.07 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 19 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 20 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 21 C 0.09 3.72 3.87 86.32 0.33 4.05 16 22 C -0.21 -3.91 9.18 22.51 0.21 -3.71 16 23 C 0.05 0.97 9.66 22.42 0.22 1.19 16 24 C -0.18 -4.74 6.89 36.59 0.25 -4.49 16 25 N 0.05 1.56 4.45 -45.96 -0.20 1.36 16 26 O -0.17 -4.93 18.52 18.89 0.35 -4.58 16 27 O -0.19 -6.37 17.26 25.60 0.44 -5.93 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.07 1.77 8.10 -2.39 -0.02 1.75 16 32 H 0.06 1.76 8.10 -2.38 -0.02 1.74 16 33 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.12 1.99 6.68 -2.39 -0.02 1.98 16 35 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 37 H 0.06 3.14 6.16 -2.39 -0.01 3.12 16 38 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.26 13.67 8.31 -92.71 -0.77 12.90 16 40 H 0.04 1.45 8.11 -2.39 -0.02 1.43 16 41 H 0.06 2.45 7.70 -2.39 -0.02 2.43 16 42 H 0.20 2.20 7.15 -2.91 -0.02 2.18 16 43 H 0.20 2.34 7.69 -2.91 -0.02 2.32 16 Total: -1.00 -64.01 355.95 2.83 -61.18 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: 1.02 Total: 9.19 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: 5.10 Total: -8.28 kcal Atomic # 7 Polarization: -80.95 SS G_CDS: -5.55 Total: -86.50 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: 0.23 Total: -19.66 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -64.01 2.83 -61.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166742855.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.833 kcal (2) G-P(sol) polarization free energy of solvation -64.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 41.77 seconds