Wall clock time and date at job start Tue Mar 31 2020 12:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47046 * 2 1 4 4 C 1.35675 * 116.99893 * 180.02562 * 3 2 1 5 5 N 1.32350 * 119.63822 * 359.72419 * 4 3 2 6 6 C 1.32462 * 121.54913 * 179.71195 * 5 4 3 7 7 N 1.38997 * 119.67253 * 180.28919 * 6 5 4 8 8 C 1.46849 * 111.00136 * 236.06611 * 7 6 5 9 9 C 1.53034 * 109.52180 * 185.83546 * 8 7 6 10 10 C 1.53121 * 109.28113 * 300.82016 * 9 8 7 11 11 C 1.53114 * 109.15861 * 57.65523 * 10 9 8 12 12 H 1.09008 * 109.50765 * 62.28985 * 11 10 9 13 13 C 1.50702 * 109.50360 * 182.40429 * 11 10 9 14 14 H 1.08001 * 119.99855 * 119.79956 * 13 11 10 15 15 C 1.37878 * 119.99869 * 299.80184 * 13 11 10 16 16 N 1.31518 * 119.99666 * 179.97438 * 15 13 11 17 17 Si 1.86796 * 120.00098 * 359.97438 * 15 13 11 18 18 H 1.48500 * 109.47382 * 89.99902 * 17 15 13 19 19 H 1.48497 * 109.47251 * 209.99635 * 17 15 13 20 20 H 1.48495 * 109.47189 * 329.99836 * 17 15 13 21 21 C 1.46846 * 110.99746 * 0.27282 * 7 6 5 22 22 C 1.39018 * 120.66017 * 0.56727 * 6 5 4 23 23 C 1.38450 * 119.22086 * 359.72458 * 22 6 5 24 24 C 1.38640 * 118.56992 * 359.97438 * 23 22 6 25 25 N 1.48004 * 120.36417 * 179.97438 * 24 23 22 26 26 O 1.21799 * 119.99889 * 0.02562 * 25 24 23 27 27 O 1.21793 * 119.99988 * 180.02562 * 25 24 23 28 28 H 1.08996 * 109.47090 * 59.99784 * 1 2 3 29 29 H 1.08994 * 109.47194 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47084 * 299.99957 * 1 2 3 31 31 H 1.08999 * 109.47084 * 240.00043 * 2 1 3 32 32 H 1.08998 * 109.47592 * 120.00144 * 2 1 3 33 33 H 1.08998 * 109.46020 * 305.84984 * 8 7 6 34 34 H 1.08998 * 109.46458 * 65.81976 * 8 7 6 35 35 H 1.09000 * 109.50302 * 180.87639 * 9 8 7 36 36 H 1.09008 * 109.50336 * 60.76278 * 9 8 7 37 37 H 1.08995 * 109.52278 * 297.74746 * 10 9 8 38 38 H 1.09006 * 109.57279 * 177.58667 * 10 9 8 39 39 H 0.97004 * 119.99886 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.46860 * 294.17606 * 21 7 6 41 41 H 1.09006 * 109.46032 * 54.14600 * 21 7 6 42 42 H 1.08005 * 120.39386 * 179.70343 * 22 6 5 43 43 H 1.08007 * 120.71999 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5251 -0.0005 5 7 4.1509 0.4704 0.0045 6 6 5.4692 0.6000 -0.0015 7 7 6.2722 -0.5345 -0.0019 8 6 7.2058 -0.5190 1.1315 9 6 8.1676 -1.7039 1.0180 10 6 7.3649 -3.0079 1.0117 11 6 6.3668 -2.9779 -0.1490 12 1 6.9082 -2.9169 -1.0932 13 6 5.5318 -4.2323 -0.1272 14 1 4.4593 -4.1653 -0.0190 15 6 6.1372 -5.4654 -0.2452 16 7 5.4086 -6.5602 -0.2256 17 14 7.9921 -5.5812 -0.4330 18 1 8.6204 -5.6780 0.9091 19 1 8.3348 -6.7877 -1.2281 20 1 8.4957 -4.3701 -1.1291 21 6 5.4571 -1.7560 -0.0018 22 6 6.0577 1.8595 -0.0015 23 6 5.2491 2.9833 -0.0010 24 6 3.8735 2.8104 -0.0010 25 7 2.9719 3.9842 0.0001 26 8 3.4375 5.1097 0.0005 27 8 1.7645 3.8246 0.0005 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 7.7732 0.4116 1.1218 34 1 6.6463 -0.5934 2.0639 35 1 8.8504 -1.7010 1.8677 36 1 8.7374 -1.6228 0.0923 37 1 6.8255 -3.1081 1.9535 38 1 8.0421 -3.8530 0.8880 39 1 5.8344 -7.4278 -0.3083 40 1 4.9057 -1.8247 0.9360 41 1 4.7544 -1.7239 -0.8345 42 1 7.1330 1.9602 -0.0016 43 1 5.6805 3.9735 -0.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166742856.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:13 Heat of formation + Delta-G solvation = 7.143847 kcal Electronic energy + Delta-G solvation = -27776.756959 eV Core-core repulsion = 23826.150624 eV Total energy + Delta-G solvation = -3950.606335 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.18176 -41.09825 -39.38841 -37.86061 -36.34375 -34.47133 -33.15756 -32.40968 -31.65365 -30.73126 -30.03461 -26.42024 -25.53277 -24.71593 -23.69099 -22.91401 -22.03685 -21.45427 -19.47277 -19.34703 -18.60457 -18.51732 -17.52350 -17.42823 -16.61099 -16.46144 -16.26322 -14.96721 -14.81478 -14.76044 -14.18283 -14.07116 -13.85537 -13.65337 -13.53377 -13.08071 -12.76419 -12.67209 -12.55894 -12.39034 -11.69653 -11.55467 -11.43669 -11.30751 -11.13878 -11.01074 -10.95797 -10.82822 -10.73851 -10.38175 -10.24961 -10.13031 -9.97287 -9.56103 -9.37224 -9.14972 -8.67509 -8.39019 -6.21186 -4.22225 -0.14892 0.77991 1.31677 1.48546 2.49986 3.04191 3.14867 3.26824 3.29186 3.35564 3.97509 4.19282 4.27669 4.47393 4.57035 4.90880 4.93518 4.94774 5.03619 5.08771 5.22012 5.25883 5.32155 5.34901 5.52075 5.59115 5.72087 5.75482 5.81452 5.90169 5.96100 5.96665 6.11158 6.31266 6.37896 6.41175 6.44744 6.65987 6.80118 6.93657 7.04387 7.32716 7.39332 7.61163 7.80632 8.34654 8.80998 9.39812 10.91699 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017456 B = 0.003738 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.672663 B = 7488.142112 C = 8895.002774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.274 6.274 4 C 0.426 3.574 5 N -0.562 5.562 6 C 0.413 3.587 7 N -0.470 5.470 8 C 0.066 3.934 9 C -0.123 4.123 10 C -0.128 4.128 11 C 0.017 3.983 12 H 0.037 0.963 13 C -0.517 4.517 14 H 0.075 0.925 15 C 0.073 3.927 16 N -0.897 5.897 17 Si 0.886 3.114 18 H -0.278 1.278 19 H -0.296 1.296 20 H -0.264 1.264 21 C 0.082 3.918 22 C -0.232 4.232 23 C 0.038 3.962 24 C -0.169 4.169 25 N 0.052 4.948 26 O -0.194 6.194 27 O -0.147 6.147 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.265 0.735 40 H 0.052 0.948 41 H 0.083 0.917 42 H 0.159 0.841 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.668 15.668 2.456 15.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.017 4.017 3 O -0.177 6.177 4 C 0.241 3.759 5 N -0.295 5.295 6 C 0.178 3.822 7 N -0.183 5.183 8 C -0.059 4.059 9 C -0.161 4.161 10 C -0.166 4.166 11 C -0.002 4.002 12 H 0.055 0.945 13 C -0.556 4.556 14 H 0.093 0.907 15 C -0.129 4.129 16 N -0.534 5.534 17 Si 0.716 3.284 18 H -0.205 1.205 19 H -0.224 1.224 20 H -0.189 1.189 21 C -0.043 4.043 22 C -0.255 4.255 23 C 0.012 3.988 24 C -0.259 4.259 25 N 0.566 4.434 26 O -0.400 6.400 27 O -0.366 6.366 28 H 0.086 0.914 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.070 0.930 41 H 0.101 0.899 42 H 0.177 0.823 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 0.847 14.212 2.041 14.382 hybrid contribution 0.842 0.493 0.371 1.044 sum 1.689 14.704 2.413 14.997 Atomic orbital electron populations 1.21807 0.92188 1.03195 1.03585 1.22907 0.95514 0.79630 1.03632 1.86539 1.14649 1.31997 1.84520 1.19163 0.85576 0.86830 0.84321 1.67833 1.05573 1.30139 1.25974 1.20133 0.86618 0.91736 0.83678 1.59007 1.17352 1.02383 1.39569 1.22303 0.93710 1.00566 0.89273 1.21738 0.97345 0.94776 1.02200 1.22121 0.98329 0.94666 1.01466 1.19267 0.93521 0.92988 0.94457 0.94500 1.20866 0.95127 0.88412 1.51150 0.90696 1.24970 0.98021 0.95640 0.94265 1.69885 1.35752 0.97900 1.49890 0.86855 0.86285 0.77296 0.77925 1.20549 1.22375 1.18903 1.22258 0.94692 0.85148 1.02219 1.21484 1.02145 0.89754 1.12145 1.21107 0.88932 1.01434 0.87282 1.20968 0.91289 0.83915 1.29721 1.43092 1.01456 1.01593 0.97264 1.94494 1.80364 1.09390 1.55748 1.94578 0.96466 1.92597 1.52951 0.91404 0.89831 0.91449 0.90609 0.90733 0.90057 0.92879 0.91367 0.91164 0.92001 0.92848 0.92480 0.92959 0.89858 0.82299 0.81535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.28 37.16 0.38 -1.11 16 2 C 0.06 0.72 6.03 37.16 0.22 0.94 16 3 O -0.27 -3.96 8.14 -40.82 -0.33 -4.30 16 4 C 0.43 6.25 7.47 -17.14 -0.13 6.12 16 5 N -0.56 -8.42 7.53 -12.51 -0.09 -8.52 16 6 C 0.41 5.70 6.40 -155.02 -0.99 4.71 16 7 N -0.47 -7.01 4.68 -173.25 -0.81 -7.82 16 8 C 0.07 0.83 5.25 -3.83 -0.02 0.81 16 9 C -0.12 -1.73 6.09 -26.65 -0.16 -1.90 16 10 C -0.13 -2.41 4.74 -26.61 -0.13 -2.54 16 11 C 0.02 0.36 1.85 -91.69 -0.17 0.19 16 12 H 0.04 0.83 7.19 -51.92 -0.37 0.45 16 13 C -0.52 -13.45 9.14 -34.44 -0.31 -13.76 16 14 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 15 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 16 N -0.90 -26.16 13.96 55.43 0.77 -25.38 16 17 Si 0.89 20.57 24.36 -169.99 -4.14 16.43 16 18 H -0.28 -6.25 6.89 56.52 0.39 -5.87 16 19 H -0.30 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.26 -5.83 6.53 56.52 0.37 -5.46 16 21 C 0.08 1.49 3.87 -3.83 -0.01 1.47 16 22 C -0.23 -2.47 9.18 -39.21 -0.36 -2.83 16 23 C 0.04 0.41 9.66 -39.35 -0.38 0.03 16 24 C -0.17 -2.33 6.89 -79.62 -0.55 -2.88 16 25 N 0.05 0.79 4.45 34.12 0.15 0.94 16 26 O -0.19 -2.92 18.52 -29.46 -0.55 -3.46 16 27 O -0.15 -2.41 17.26 -36.48 -0.63 -3.04 16 28 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.98 8.11 -51.93 -0.42 0.56 16 32 H 0.07 0.95 8.10 -51.93 -0.42 0.53 16 33 H 0.08 0.76 6.66 -51.93 -0.35 0.42 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 1.00 8.14 -51.92 -0.42 0.58 16 37 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 38 H 0.05 1.09 3.37 -51.93 -0.17 0.91 16 39 H 0.27 7.28 8.31 -40.82 -0.34 6.95 16 40 H 0.05 0.98 8.11 -51.93 -0.42 0.56 16 41 H 0.08 1.61 7.71 -51.93 -0.40 1.21 16 42 H 0.16 1.25 7.13 -52.48 -0.37 0.87 16 43 H 0.17 1.34 7.69 -52.48 -0.40 0.94 16 LS Contribution 349.08 15.07 5.26 5.26 Total: -1.00 -29.92 349.08 -8.97 -38.89 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -5.89 Total: -0.15 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -2.71 Total: -8.86 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.02 Total: -40.78 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: -1.51 Total: -10.80 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.14 Total: 16.43 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.92 -8.97 -38.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166742856.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.033 kcal (2) G-P(sol) polarization free energy of solvation -29.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds