Wall clock time and date at job start Tue Mar 31 2020 12:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47046 * 2 1 4 4 C 1.35675 * 116.99893 * 180.02562 * 3 2 1 5 5 N 1.32350 * 119.63822 * 359.72419 * 4 3 2 6 6 C 1.32462 * 121.54913 * 179.71195 * 5 4 3 7 7 N 1.38997 * 119.67253 * 180.28919 * 6 5 4 8 8 C 1.46849 * 111.00136 * 236.06611 * 7 6 5 9 9 C 1.53034 * 109.52180 * 185.83546 * 8 7 6 10 10 C 1.53121 * 109.28113 * 300.82016 * 9 8 7 11 11 C 1.53114 * 109.15861 * 57.65523 * 10 9 8 12 12 H 1.09008 * 109.50765 * 62.28985 * 11 10 9 13 13 C 1.50702 * 109.50360 * 182.40429 * 11 10 9 14 14 H 1.08001 * 119.99855 * 119.79956 * 13 11 10 15 15 C 1.37878 * 119.99869 * 299.80184 * 13 11 10 16 16 N 1.31518 * 119.99666 * 179.97438 * 15 13 11 17 17 Si 1.86796 * 120.00098 * 359.97438 * 15 13 11 18 18 H 1.48500 * 109.47382 * 89.99902 * 17 15 13 19 19 H 1.48497 * 109.47251 * 209.99635 * 17 15 13 20 20 H 1.48495 * 109.47189 * 329.99836 * 17 15 13 21 21 C 1.46846 * 110.99746 * 0.27282 * 7 6 5 22 22 C 1.39018 * 120.66017 * 0.56727 * 6 5 4 23 23 C 1.38450 * 119.22086 * 359.72458 * 22 6 5 24 24 C 1.38640 * 118.56992 * 359.97438 * 23 22 6 25 25 N 1.48004 * 120.36417 * 179.97438 * 24 23 22 26 26 O 1.21799 * 119.99889 * 0.02562 * 25 24 23 27 27 O 1.21793 * 119.99988 * 180.02562 * 25 24 23 28 28 H 1.08996 * 109.47090 * 59.99784 * 1 2 3 29 29 H 1.08994 * 109.47194 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47084 * 299.99957 * 1 2 3 31 31 H 1.08999 * 109.47084 * 240.00043 * 2 1 3 32 32 H 1.08998 * 109.47592 * 120.00144 * 2 1 3 33 33 H 1.08998 * 109.46020 * 305.84984 * 8 7 6 34 34 H 1.08998 * 109.46458 * 65.81976 * 8 7 6 35 35 H 1.09000 * 109.50302 * 180.87639 * 9 8 7 36 36 H 1.09008 * 109.50336 * 60.76278 * 9 8 7 37 37 H 1.08995 * 109.52278 * 297.74746 * 10 9 8 38 38 H 1.09006 * 109.57279 * 177.58667 * 10 9 8 39 39 H 0.97004 * 119.99886 * 180.02562 * 16 15 13 40 40 H 1.09001 * 109.46860 * 294.17606 * 21 7 6 41 41 H 1.09006 * 109.46032 * 54.14600 * 21 7 6 42 42 H 1.08005 * 120.39386 * 179.70343 * 22 6 5 43 43 H 1.08007 * 120.71999 * 180.02562 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5251 -0.0005 5 7 4.1509 0.4704 0.0045 6 6 5.4692 0.6000 -0.0015 7 7 6.2722 -0.5345 -0.0019 8 6 7.2058 -0.5190 1.1315 9 6 8.1676 -1.7039 1.0180 10 6 7.3649 -3.0079 1.0117 11 6 6.3668 -2.9779 -0.1490 12 1 6.9082 -2.9169 -1.0932 13 6 5.5318 -4.2323 -0.1272 14 1 4.4593 -4.1653 -0.0190 15 6 6.1372 -5.4654 -0.2452 16 7 5.4086 -6.5602 -0.2256 17 14 7.9921 -5.5812 -0.4330 18 1 8.6204 -5.6780 0.9091 19 1 8.3348 -6.7877 -1.2281 20 1 8.4957 -4.3701 -1.1291 21 6 5.4571 -1.7560 -0.0018 22 6 6.0577 1.8595 -0.0015 23 6 5.2491 2.9833 -0.0010 24 6 3.8735 2.8104 -0.0010 25 7 2.9719 3.9842 0.0001 26 8 3.4375 5.1097 0.0005 27 8 1.7645 3.8246 0.0005 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 7.7732 0.4116 1.1218 34 1 6.6463 -0.5934 2.0639 35 1 8.8504 -1.7010 1.8677 36 1 8.7374 -1.6228 0.0923 37 1 6.8255 -3.1081 1.9535 38 1 8.0421 -3.8530 0.8880 39 1 5.8344 -7.4278 -0.3083 40 1 4.9057 -1.8247 0.9360 41 1 4.7544 -1.7239 -0.8345 42 1 7.1330 1.9602 -0.0016 43 1 5.6805 3.9735 -0.0015 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166742856.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:12 Heat of formation + Delta-G solvation = -11.533348 kcal Electronic energy + Delta-G solvation = -27777.566863 eV Core-core repulsion = 23826.150624 eV Total energy + Delta-G solvation = -3951.416239 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.29821 -42.20135 -40.53750 -39.01884 -37.51188 -35.92546 -34.47958 -33.76197 -32.80027 -32.14127 -31.14330 -27.64178 -27.12492 -25.87773 -24.88013 -24.04326 -23.10964 -22.79439 -20.76972 -20.55082 -19.78919 -19.64911 -18.97312 -18.66092 -18.11412 -17.55210 -17.36578 -16.50449 -16.05688 -15.89249 -15.49121 -15.13946 -15.03304 -14.76339 -14.72672 -14.65620 -14.19083 -13.90773 -13.52354 -13.43579 -12.97481 -12.92209 -12.67056 -12.60987 -12.41175 -12.27179 -12.19459 -12.09961 -11.94546 -11.83327 -11.76661 -11.49586 -11.28766 -11.12039 -10.89412 -10.69880 -10.57842 -9.48255 -8.32100 -6.37395 -1.23985 -0.15552 0.19893 0.39060 1.29776 1.37012 1.47203 1.50076 2.01492 2.29350 2.31386 2.90428 3.03701 3.19255 3.50798 3.68322 3.84609 3.93263 3.98346 4.00874 4.13025 4.28817 4.30199 4.33524 4.40820 4.52044 4.62348 4.68388 4.71864 4.78797 4.85310 4.85871 4.91274 5.00658 5.11669 5.13994 5.27927 5.36738 5.39545 5.61701 5.69271 5.71947 5.90177 6.23071 6.37216 6.61578 6.69650 7.28395 8.84645 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017456 B = 0.003738 C = 0.003147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.672663 B = 7488.142112 C = 8895.002774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.058 3.942 3 O -0.286 6.286 4 C 0.409 3.591 5 N -0.586 5.586 6 C 0.395 3.605 7 N -0.470 5.470 8 C 0.061 3.939 9 C -0.115 4.115 10 C -0.129 4.129 11 C 0.018 3.982 12 H 0.030 0.970 13 C -0.521 4.521 14 H 0.030 0.970 15 C 0.013 3.987 16 N -0.950 5.950 17 Si 0.952 3.048 18 H -0.262 1.262 19 H -0.304 1.304 20 H -0.242 1.242 21 C 0.101 3.899 22 C -0.205 4.205 23 C 0.051 3.949 24 C -0.176 4.176 25 N 0.052 4.948 26 O -0.171 6.171 27 O -0.194 6.194 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.130 0.870 34 H 0.051 0.949 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.052 0.948 38 H 0.041 0.959 39 H 0.266 0.734 40 H 0.037 0.963 41 H 0.060 0.940 42 H 0.203 0.797 43 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.332 18.639 2.957 19.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.016 4.016 3 O -0.190 6.190 4 C 0.225 3.775 5 N -0.319 5.319 6 C 0.162 3.838 7 N -0.184 5.184 8 C -0.062 4.062 9 C -0.153 4.153 10 C -0.167 4.167 11 C -0.001 4.001 12 H 0.048 0.952 13 C -0.560 4.560 14 H 0.048 0.952 15 C -0.184 4.184 16 N -0.590 5.590 17 Si 0.778 3.222 18 H -0.188 1.188 19 H -0.232 1.232 20 H -0.165 1.165 21 C -0.026 4.026 22 C -0.228 4.228 23 C 0.026 3.974 24 C -0.266 4.266 25 N 0.563 4.437 26 O -0.385 6.385 27 O -0.402 6.402 28 H 0.089 0.911 29 H 0.116 0.884 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.148 0.852 34 H 0.070 0.930 35 H 0.120 0.880 36 H 0.095 0.905 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.055 0.945 41 H 0.078 0.922 42 H 0.220 0.780 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 4.428 17.180 2.552 17.924 hybrid contribution -0.343 -0.368 0.219 0.549 sum 4.085 16.811 2.772 17.521 Atomic orbital electron populations 1.21811 0.90194 1.04214 1.03900 1.22952 0.97078 0.79085 1.02514 1.86541 1.15157 1.32588 1.84713 1.19336 0.85580 0.87351 0.85265 1.67744 1.06763 1.30867 1.26575 1.20429 0.86221 0.92623 0.84562 1.59038 1.17127 1.01042 1.41210 1.22542 0.93221 1.02202 0.88264 1.21710 0.97348 0.92111 1.04105 1.21999 0.97825 0.97458 0.99398 1.19149 0.93845 0.91756 0.95383 0.95209 1.21219 0.93871 0.91002 1.49886 0.95169 1.25878 1.03359 0.95092 0.94083 1.70055 1.38107 0.98625 1.52224 0.85795 0.80055 0.77618 0.78689 1.18805 1.23189 1.16518 1.21726 0.94025 0.86335 1.00465 1.21834 1.03976 0.87628 1.09389 1.21569 0.87179 1.03196 0.85445 1.21261 0.92307 0.82864 1.30207 1.43297 1.01521 1.01986 0.96923 1.94454 1.80156 1.09844 1.54073 1.94595 0.97231 1.92822 1.55511 0.91124 0.88422 0.91019 0.91863 0.91693 0.85177 0.93022 0.87954 0.90511 0.92884 0.94102 0.92546 0.94510 0.92177 0.78030 0.77905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 10.28 71.98 0.74 -2.25 16 2 C 0.06 1.56 6.03 71.98 0.43 2.00 16 3 O -0.29 -8.64 8.14 -68.79 -0.56 -9.20 16 4 C 0.41 11.97 7.47 84.73 0.63 12.60 16 5 N -0.59 -17.49 7.53 -306.32 -2.31 -19.80 16 6 C 0.40 9.91 6.40 133.02 0.85 10.76 16 7 N -0.47 -12.85 4.68 -702.05 -3.28 -16.14 16 8 C 0.06 1.25 5.25 86.32 0.45 1.71 16 9 C -0.12 -2.73 6.09 30.65 0.19 -2.54 16 10 C -0.13 -4.62 4.74 30.67 0.15 -4.48 16 11 C 0.02 0.76 1.85 -11.49 -0.02 0.74 16 12 H 0.03 1.31 7.19 -2.38 -0.02 1.30 16 13 C -0.52 -28.45 9.14 25.60 0.23 -28.21 16 14 H 0.03 1.85 7.99 -2.91 -0.02 1.83 16 15 C 0.01 0.73 5.45 84.65 0.46 1.19 16 16 N -0.95 -58.06 13.96 21.45 0.30 -57.76 16 17 Si 0.95 42.55 24.36 68.60 1.67 44.22 16 18 H -0.26 -10.96 6.89 99.48 0.69 -10.27 16 19 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 20 H -0.24 -9.81 6.53 99.48 0.65 -9.16 16 21 C 0.10 3.74 3.87 86.33 0.33 4.07 16 22 C -0.21 -3.33 9.18 22.51 0.21 -3.12 16 23 C 0.05 0.88 9.66 22.42 0.22 1.09 16 24 C -0.18 -4.53 6.89 36.59 0.25 -4.28 16 25 N 0.05 1.51 4.45 -45.96 -0.20 1.31 16 26 O -0.17 -4.72 18.52 18.89 0.35 -4.37 16 27 O -0.19 -6.43 17.26 25.61 0.44 -5.99 16 28 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.06 1.81 8.11 -2.39 -0.02 1.79 16 32 H 0.06 1.81 8.10 -2.39 -0.02 1.80 16 33 H 0.13 1.48 6.66 -2.39 -0.02 1.47 16 34 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 37 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.04 1.56 3.37 -2.38 -0.01 1.55 16 39 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 40 H 0.04 1.44 8.11 -2.39 -0.02 1.42 16 41 H 0.06 2.45 7.71 -2.38 -0.02 2.44 16 42 H 0.20 1.57 7.13 -2.91 -0.02 1.55 16 43 H 0.20 2.01 7.69 -2.91 -0.02 1.99 16 Total: -1.00 -70.87 349.08 2.49 -68.38 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 0.95 Total: 10.06 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: 5.13 Total: -10.71 kcal Atomic # 7 Polarization: -86.89 SS G_CDS: -5.50 Total: -92.39 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: 0.23 Total: -19.57 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 1.67 Total: 44.22 kcal Total: -70.87 2.49 -68.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166742856.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.850 kcal (2) G-P(sol) polarization free energy of solvation -70.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds