Wall clock time and date at job start Tue Mar 31 2020 13:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42897 * 109.46945 * 2 1 4 4 C 1.36019 * 116.99772 * 179.97438 * 3 2 1 5 5 C 1.38513 * 120.38996 * 0.02562 * 4 3 2 6 6 N 1.31972 * 120.77425 * 179.97438 * 5 4 3 7 7 C 1.32357 * 121.68273 * 359.97438 * 6 5 4 8 8 N 1.39255 * 119.64876 * 179.97438 * 7 6 5 9 9 C 1.46503 * 119.99643 * 354.20699 * 8 7 6 10 10 H 1.09000 * 109.41683 * 324.98827 * 9 8 7 11 11 C 1.52954 * 109.41716 * 84.85419 * 9 8 7 12 12 C 1.53246 * 109.40005 * 183.77003 * 11 9 8 13 13 C 1.51266 * 108.48449 * 305.26809 * 12 11 9 14 14 C 1.37877 * 120.84978 * 231.36314 * 13 12 11 15 15 N 1.31508 * 120.00017 * 180.02562 * 14 13 12 16 16 Si 1.86797 * 119.99873 * 0.02562 * 14 13 12 17 17 H 1.48500 * 109.47267 * 89.99810 * 16 14 13 18 18 H 1.48505 * 109.47216 * 209.99769 * 16 14 13 19 19 H 1.48505 * 109.47183 * 329.99662 * 16 14 13 20 20 C 1.51272 * 118.30059 * 51.38888 * 13 12 11 21 21 C 1.52965 * 109.40894 * 205.13845 * 9 8 7 22 22 C 1.39046 * 120.70540 * 359.72357 * 7 6 5 23 23 N 1.48010 * 120.42191 * 180.28553 * 22 7 6 24 24 O 1.21796 * 119.99688 * 186.20758 * 23 22 7 25 25 O 1.21796 * 119.99778 * 6.20745 * 23 22 7 26 26 C 1.38343 * 119.15346 * 0.55060 * 22 7 6 27 27 H 1.09004 * 109.47015 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47562 * 300.00220 * 1 2 3 29 29 H 1.09003 * 109.46901 * 60.00702 * 1 2 3 30 30 H 1.09003 * 109.47133 * 239.99457 * 2 1 3 31 31 H 1.09004 * 109.46465 * 119.99606 * 2 1 3 32 32 H 1.07996 * 119.61200 * 359.95541 * 5 4 3 33 33 H 0.96991 * 120.00454 * 174.20009 * 8 7 6 34 34 H 1.09000 * 109.48463 * 303.68106 * 11 9 8 35 35 H 1.09003 * 109.48237 * 63.72288 * 11 9 8 36 36 H 1.08997 * 109.61859 * 185.58801 * 12 11 9 37 37 H 1.09005 * 109.84122 * 65.07594 * 12 11 9 38 38 H 0.97005 * 120.00271 * 179.97438 * 15 14 13 39 39 H 1.08998 * 109.62501 * 188.94192 * 20 13 12 40 40 H 1.08994 * 109.78862 * 68.45719 * 20 13 12 41 41 H 1.09000 * 109.48208 * 296.26935 * 21 9 8 42 42 H 1.08998 * 109.48712 * 56.31583 * 21 9 8 43 43 H 1.08008 * 120.76443 * 179.73116 * 26 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3548 1.5255 0.0005 5 6 4.2060 0.4328 0.0005 6 7 5.5154 0.5969 0.0005 7 6 6.0651 1.8009 0.0001 8 7 7.4522 1.9249 0.0007 9 6 8.2940 0.7330 0.1298 10 1 7.8077 0.0157 0.7910 11 6 8.4940 0.0998 -1.2481 12 6 9.2953 -1.1980 -1.1005 13 6 10.5809 -0.8871 -0.3664 14 6 11.7992 -1.2849 -0.8746 15 7 12.9065 -1.0061 -0.2222 16 14 11.8771 -2.2199 -2.4899 17 1 12.0028 -1.2571 -3.6136 18 1 13.0533 -3.1264 -2.4810 19 1 10.6372 -3.0194 -2.6594 20 6 10.4954 -0.1290 0.9399 21 6 9.6492 1.1291 0.7185 22 6 5.2725 2.9433 -0.0062 23 7 5.8938 4.2866 -0.0131 24 8 5.1977 5.2801 0.0955 25 8 7.1013 4.3985 -0.1273 26 6 3.8957 2.8083 -0.0004 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 1.8934 -0.5139 -0.8900 31 1 1.8932 -0.5138 0.8901 32 1 3.7932 -0.5652 0.0008 33 1 7.8609 2.8004 -0.0846 34 1 7.5229 -0.1220 -1.6906 35 1 9.0370 0.7925 -1.8911 36 1 9.5252 -1.6003 -2.0871 37 1 8.7171 -1.9274 -0.5333 38 1 13.7637 -1.2863 -0.5796 39 1 11.4964 0.1555 1.2641 40 1 10.0285 -0.7552 1.7000 41 1 10.1643 1.7968 0.0280 42 1 9.4974 1.6372 1.6708 43 1 3.2552 3.6780 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167841047.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:49 Heat of formation + Delta-G solvation = -6.336283 kcal Electronic energy + Delta-G solvation = -27322.111391 eV Core-core repulsion = 23370.920514 eV Total energy + Delta-G solvation = -3951.190877 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.31542 -40.88974 -38.96293 -37.42978 -36.60118 -34.39282 -33.34280 -32.30974 -31.58806 -29.87985 -29.26715 -27.19260 -26.70009 -24.29395 -23.47273 -22.58875 -21.71791 -21.41162 -19.67010 -19.52900 -18.80684 -17.92928 -17.66787 -17.55052 -16.74425 -16.55323 -16.14292 -15.09181 -14.70717 -14.46207 -14.41592 -14.10219 -13.53789 -13.46593 -13.18345 -13.01948 -12.81932 -12.40150 -12.20948 -12.03978 -11.78092 -11.53201 -11.45135 -11.33459 -11.19525 -11.10730 -10.89651 -10.75057 -10.56400 -10.29430 -10.09849 -10.01065 -9.79400 -9.49677 -9.02440 -8.70973 -8.51339 -7.68554 -6.14749 -4.06040 -0.25300 0.99767 1.23718 1.32859 2.74875 3.09351 3.24740 3.27594 3.33216 3.34140 3.97349 4.13633 4.27030 4.34584 4.47156 4.48540 4.77285 4.80135 4.90635 5.13029 5.15658 5.30209 5.35581 5.55395 5.62140 5.64944 5.77659 6.09346 6.28487 6.40917 6.54458 6.63366 6.67296 6.80122 6.83708 6.94761 7.01443 7.11379 7.26195 7.36999 7.59639 7.64044 7.66175 7.76831 8.00136 8.32519 8.91429 9.49888 10.94786 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014395 B = 0.003483 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.655069 B = 8037.389313 C = 9449.476449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.309 6.309 4 C 0.002 3.998 5 C 0.141 3.859 6 N -0.488 5.488 7 C 0.445 3.555 8 N -0.677 5.677 9 C 0.153 3.847 10 H 0.082 0.918 11 C -0.112 4.112 12 C -0.011 4.011 13 C -0.492 4.492 14 C 0.077 3.923 15 N -0.888 5.888 16 Si 0.888 3.112 17 H -0.278 1.278 18 H -0.290 1.290 19 H -0.267 1.267 20 C 0.015 3.985 21 C -0.117 4.117 22 C -0.152 4.152 23 N 0.059 4.941 24 O -0.163 6.163 25 O -0.192 6.192 26 C 0.001 3.999 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.175 0.825 33 H 0.422 0.578 34 H 0.038 0.962 35 H 0.052 0.948 36 H 0.031 0.969 37 H 0.020 0.980 38 H 0.265 0.735 39 H 0.062 0.938 40 H 0.006 0.994 41 H 0.058 0.942 42 H 0.037 0.963 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.969 2.614 0.505 22.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.025 4.025 3 O -0.223 6.223 4 C -0.049 4.049 5 C -0.024 4.024 6 N -0.207 5.207 7 C 0.202 3.798 8 N -0.315 5.315 9 C 0.051 3.949 10 H 0.100 0.900 11 C -0.151 4.151 12 C -0.049 4.049 13 C -0.511 4.511 14 C -0.126 4.126 15 N -0.526 5.526 16 Si 0.717 3.283 17 H -0.204 1.204 18 H -0.216 1.216 19 H -0.192 1.192 20 C -0.022 4.022 21 C -0.155 4.155 22 C -0.248 4.248 23 N 0.567 4.433 24 O -0.378 6.378 25 O -0.391 6.391 26 C -0.027 4.027 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.192 0.808 33 H 0.272 0.728 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.049 0.951 37 H 0.038 0.962 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.024 0.976 41 H 0.077 0.923 42 H 0.055 0.945 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -21.316 1.349 0.521 21.365 hybrid contribution -0.093 0.659 -0.978 1.183 sum -21.409 2.008 -0.458 21.508 Atomic orbital electron populations 1.21764 0.92367 1.03055 1.03643 1.22871 0.96335 0.81598 1.01685 1.86079 1.16829 1.29396 1.89955 1.19211 0.84576 0.92995 1.08088 1.23261 0.88121 0.99241 0.91776 1.67734 1.12419 1.20829 1.19707 1.18197 0.87055 0.86560 0.87975 1.46792 1.00349 1.14214 1.70161 1.21290 0.90501 0.84684 0.98474 0.89996 1.21935 0.98450 0.99721 0.95030 1.19696 0.95728 0.92527 0.96916 1.20030 0.89778 1.35309 1.05949 1.24842 0.95195 0.95397 0.97154 1.69826 0.97876 1.45927 1.38925 0.86658 0.77306 0.80289 0.84090 1.20407 1.21607 1.19204 1.19323 0.96578 0.90773 0.95564 1.21979 0.94024 1.01398 0.98106 1.21065 0.93470 0.81858 1.28359 1.43173 1.00583 1.02460 0.97043 1.94507 1.61965 1.27940 1.53368 1.94229 0.97239 1.91723 1.55943 1.20238 0.91491 0.97667 0.93275 0.90148 0.91409 0.91429 0.91703 0.91694 0.80815 0.72830 0.94339 0.92949 0.95072 0.96194 0.92507 0.91938 0.97578 0.92322 0.94467 0.81714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.69 10.28 37.16 0.38 -0.31 16 2 C 0.05 0.30 5.47 37.16 0.20 0.50 16 3 O -0.31 -2.84 10.15 -19.80 -0.20 -3.05 16 4 C 0.00 0.02 6.71 -39.12 -0.26 -0.24 16 5 C 0.14 1.54 10.21 -17.39 -0.18 1.36 16 6 N -0.49 -7.10 9.14 -12.28 -0.11 -7.21 16 7 C 0.45 6.97 7.44 -154.84 -1.15 5.81 16 8 N -0.68 -11.58 5.11 -53.93 -0.28 -11.85 16 9 C 0.15 2.91 2.32 -67.97 -0.16 2.76 16 10 H 0.08 1.61 7.64 -51.93 -0.40 1.21 16 11 C -0.11 -2.27 5.52 -26.63 -0.15 -2.42 16 12 C -0.01 -0.24 5.60 -27.48 -0.15 -0.39 16 13 C -0.49 -12.60 5.51 -98.92 -0.55 -13.15 16 14 C 0.08 2.07 5.46 -17.82 -0.10 1.97 16 15 N -0.89 -25.11 12.73 55.43 0.71 -24.41 16 16 Si 0.89 20.81 27.27 -169.99 -4.64 16.18 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 19 H -0.27 -6.06 6.46 56.52 0.37 -5.69 16 20 C 0.02 0.37 5.97 -27.48 -0.16 0.21 16 21 C -0.12 -2.40 5.40 -26.63 -0.14 -2.55 16 22 C -0.15 -2.20 6.88 -79.61 -0.55 -2.75 16 23 N 0.06 0.93 4.45 34.13 0.15 1.08 16 24 O -0.16 -2.51 18.53 -29.46 -0.55 -3.05 16 25 O -0.19 -3.23 15.73 -29.46 -0.46 -3.69 16 26 C 0.00 0.01 9.62 -39.18 -0.38 -0.37 16 27 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.32 7.68 -51.93 -0.40 -0.08 16 31 H 0.06 0.32 7.67 -51.93 -0.40 -0.08 16 32 H 0.17 1.29 6.30 -52.49 -0.33 0.96 16 33 H 0.42 7.19 5.03 -41.19 -0.21 6.98 16 34 H 0.04 0.73 8.02 -51.93 -0.42 0.31 16 35 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.03 0.71 4.78 -51.93 -0.25 0.46 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 39 H 0.06 1.66 7.07 -51.93 -0.37 1.29 16 40 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 41 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 42 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.17 1.67 7.70 -52.48 -0.40 1.26 16 LS Contribution 351.53 15.07 5.30 5.30 Total: -1.00 -29.07 351.53 -9.14 -38.21 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -5.72 Total: 2.05 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -3.34 Total: -9.56 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.47 Total: -42.39 kcal Atomic # 8 Polarization: -8.58 SS G_CDS: -1.21 Total: -9.79 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.64 Total: 16.18 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.07 -9.14 -38.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167841047.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.872 kcal (2) G-P(sol) polarization free energy of solvation -29.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds