Wall clock time and date at job start Tue Mar 31 2020 13:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42897 * 109.46945 * 2 1 4 4 C 1.36019 * 116.99772 * 179.97438 * 3 2 1 5 5 C 1.38513 * 120.38996 * 0.02562 * 4 3 2 6 6 N 1.31972 * 120.77425 * 179.97438 * 5 4 3 7 7 C 1.32357 * 121.68273 * 359.97438 * 6 5 4 8 8 N 1.39255 * 119.64876 * 179.97438 * 7 6 5 9 9 C 1.46503 * 119.99643 * 354.20699 * 8 7 6 10 10 H 1.09000 * 109.41683 * 324.98827 * 9 8 7 11 11 C 1.52954 * 109.41716 * 84.85419 * 9 8 7 12 12 C 1.53246 * 109.40005 * 183.77003 * 11 9 8 13 13 C 1.51266 * 108.48449 * 305.26809 * 12 11 9 14 14 C 1.37877 * 120.84978 * 231.36314 * 13 12 11 15 15 N 1.31508 * 120.00017 * 180.02562 * 14 13 12 16 16 Si 1.86797 * 119.99873 * 0.02562 * 14 13 12 17 17 H 1.48500 * 109.47267 * 89.99810 * 16 14 13 18 18 H 1.48505 * 109.47216 * 209.99769 * 16 14 13 19 19 H 1.48505 * 109.47183 * 329.99662 * 16 14 13 20 20 C 1.51272 * 118.30059 * 51.38888 * 13 12 11 21 21 C 1.52965 * 109.40894 * 205.13845 * 9 8 7 22 22 C 1.39046 * 120.70540 * 359.72357 * 7 6 5 23 23 N 1.48010 * 120.42191 * 180.28553 * 22 7 6 24 24 O 1.21796 * 119.99688 * 186.20758 * 23 22 7 25 25 O 1.21796 * 119.99778 * 6.20745 * 23 22 7 26 26 C 1.38343 * 119.15346 * 0.55060 * 22 7 6 27 27 H 1.09004 * 109.47015 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47562 * 300.00220 * 1 2 3 29 29 H 1.09003 * 109.46901 * 60.00702 * 1 2 3 30 30 H 1.09003 * 109.47133 * 239.99457 * 2 1 3 31 31 H 1.09004 * 109.46465 * 119.99606 * 2 1 3 32 32 H 1.07996 * 119.61200 * 359.95541 * 5 4 3 33 33 H 0.96991 * 120.00454 * 174.20009 * 8 7 6 34 34 H 1.09000 * 109.48463 * 303.68106 * 11 9 8 35 35 H 1.09003 * 109.48237 * 63.72288 * 11 9 8 36 36 H 1.08997 * 109.61859 * 185.58801 * 12 11 9 37 37 H 1.09005 * 109.84122 * 65.07594 * 12 11 9 38 38 H 0.97005 * 120.00271 * 179.97438 * 15 14 13 39 39 H 1.08998 * 109.62501 * 188.94192 * 20 13 12 40 40 H 1.08994 * 109.78862 * 68.45719 * 20 13 12 41 41 H 1.09000 * 109.48208 * 296.26935 * 21 9 8 42 42 H 1.08998 * 109.48712 * 56.31583 * 21 9 8 43 43 H 1.08008 * 120.76443 * 179.73116 * 26 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3548 1.5255 0.0005 5 6 4.2060 0.4328 0.0005 6 7 5.5154 0.5969 0.0005 7 6 6.0651 1.8009 0.0001 8 7 7.4522 1.9249 0.0007 9 6 8.2940 0.7330 0.1298 10 1 7.8077 0.0157 0.7910 11 6 8.4940 0.0998 -1.2481 12 6 9.2953 -1.1980 -1.1005 13 6 10.5809 -0.8871 -0.3664 14 6 11.7992 -1.2849 -0.8746 15 7 12.9065 -1.0061 -0.2222 16 14 11.8771 -2.2199 -2.4899 17 1 12.0028 -1.2571 -3.6136 18 1 13.0533 -3.1264 -2.4810 19 1 10.6372 -3.0194 -2.6594 20 6 10.4954 -0.1290 0.9399 21 6 9.6492 1.1291 0.7185 22 6 5.2725 2.9433 -0.0062 23 7 5.8938 4.2866 -0.0131 24 8 5.1977 5.2801 0.0955 25 8 7.1013 4.3985 -0.1273 26 6 3.8957 2.8083 -0.0004 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8901 30 1 1.8934 -0.5139 -0.8900 31 1 1.8932 -0.5138 0.8901 32 1 3.7932 -0.5652 0.0008 33 1 7.8609 2.8004 -0.0846 34 1 7.5229 -0.1220 -1.6906 35 1 9.0370 0.7925 -1.8911 36 1 9.5252 -1.6003 -2.0871 37 1 8.7171 -1.9274 -0.5333 38 1 13.7637 -1.2863 -0.5796 39 1 11.4964 0.1555 1.2641 40 1 10.0285 -0.7552 1.7000 41 1 10.1643 1.7968 0.0280 42 1 9.4974 1.6372 1.6708 43 1 3.2552 3.6780 -0.0007 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167841047.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:49 Heat of formation + Delta-G solvation = -22.156237 kcal Electronic energy + Delta-G solvation = -27322.797395 eV Core-core repulsion = 23370.920514 eV Total energy + Delta-G solvation = -3951.876882 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.46462 -41.87191 -39.95977 -38.79717 -37.84552 -35.86174 -34.32738 -33.76939 -32.50894 -31.56743 -30.50218 -28.69913 -27.82621 -25.23134 -24.61041 -23.56825 -23.33152 -22.98271 -21.18321 -20.62542 -19.97374 -19.06130 -18.76967 -18.55936 -17.93587 -17.77474 -17.17127 -16.41205 -16.37138 -15.69823 -15.38384 -15.11301 -15.00703 -14.60266 -14.33305 -14.24584 -14.02030 -13.81495 -13.43819 -13.38810 -12.85785 -12.79577 -12.73030 -12.63766 -12.50165 -12.42889 -12.39124 -12.02222 -11.89380 -11.82067 -11.65747 -11.45611 -11.06329 -10.93345 -10.77297 -10.54825 -10.44446 -8.79829 -8.17288 -6.11571 -1.33688 0.00789 0.14163 0.22918 1.38494 1.41675 1.50159 1.85372 2.08339 2.27905 2.40825 3.01562 3.09161 3.17015 3.32096 3.75549 3.89042 4.00138 4.12180 4.15241 4.20310 4.38114 4.44619 4.48331 4.64834 4.68641 4.86617 4.92246 4.94974 5.00877 5.03929 5.04682 5.17279 5.23983 5.28264 5.30757 5.56355 5.61280 5.73513 5.78629 5.86748 6.00823 6.15478 6.33526 6.44532 6.79049 6.94661 7.46627 8.93682 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014395 B = 0.003483 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.655069 B = 8037.389313 C = 9449.476449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.036 3.964 3 O -0.314 6.314 4 C 0.026 3.974 5 C 0.148 3.852 6 N -0.508 5.508 7 C 0.432 3.568 8 N -0.689 5.689 9 C 0.171 3.829 10 H 0.080 0.920 11 C -0.104 4.104 12 C -0.011 4.011 13 C -0.500 4.500 14 C 0.022 3.978 15 N -0.931 5.931 16 Si 0.941 3.059 17 H -0.277 1.277 18 H -0.292 1.292 19 H -0.251 1.251 20 C 0.013 3.987 21 C -0.107 4.107 22 C -0.156 4.156 23 N 0.059 4.941 24 O -0.152 6.152 25 O -0.228 6.228 26 C -0.005 4.005 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.212 0.788 33 H 0.420 0.580 34 H 0.055 0.945 35 H 0.040 0.960 36 H 0.032 0.968 37 H 0.027 0.973 38 H 0.263 0.737 39 H 0.030 0.970 40 H 0.005 0.995 41 H 0.046 0.954 42 H 0.051 0.949 43 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.623 1.649 -0.160 25.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.038 4.038 3 O -0.228 6.228 4 C -0.025 4.025 5 C -0.016 4.016 6 N -0.227 5.227 7 C 0.191 3.809 8 N -0.329 5.329 9 C 0.067 3.933 10 H 0.098 0.902 11 C -0.143 4.143 12 C -0.049 4.049 13 C -0.520 4.520 14 C -0.176 4.176 15 N -0.570 5.570 16 Si 0.767 3.233 17 H -0.203 1.203 18 H -0.219 1.219 19 H -0.175 1.175 20 C -0.025 4.025 21 C -0.146 4.146 22 C -0.251 4.251 23 N 0.564 4.436 24 O -0.372 6.372 25 O -0.419 6.419 26 C -0.032 4.032 27 H 0.118 0.882 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.229 0.771 33 H 0.270 0.730 34 H 0.073 0.927 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.045 0.955 38 H 0.072 0.928 39 H 0.049 0.951 40 H 0.024 0.976 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -24.986 0.367 -0.154 24.989 hybrid contribution 0.727 0.930 -0.692 1.368 sum -24.259 1.297 -0.846 24.308 Atomic orbital electron populations 1.21802 0.91398 1.04253 1.03269 1.23266 0.97196 0.80105 1.03204 1.86121 1.15539 1.31780 1.89315 1.19198 0.85420 0.92334 1.05536 1.23860 0.86887 1.01034 0.89829 1.67765 1.14212 1.20262 1.20449 1.18275 0.86412 0.87463 0.88781 1.46470 1.01079 1.13096 1.72302 1.20839 0.89678 0.85350 0.97404 0.90233 1.21798 0.98573 0.98160 0.95758 1.19696 0.94695 0.93970 0.96526 1.20638 0.90957 1.34092 1.06273 1.25608 0.95126 0.96674 1.00195 1.69966 0.98345 1.48022 1.40716 0.85810 0.77676 0.79264 0.80568 1.20270 1.21912 1.17489 1.19262 0.95584 0.92352 0.95300 1.21763 0.94618 0.99371 0.98799 1.21135 0.94245 0.80611 1.29134 1.43392 1.00446 1.03031 0.96733 1.94475 1.61730 1.28542 1.52434 1.94235 0.97858 1.92015 1.57814 1.20456 0.90511 0.99062 0.93185 0.88170 0.91793 0.91843 0.90163 0.90105 0.77122 0.73036 0.92653 0.94071 0.95000 0.95509 0.92803 0.95148 0.97635 0.93512 0.93051 0.80102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 10.28 71.98 0.74 -0.11 16 2 C 0.04 0.28 5.47 71.98 0.39 0.67 16 3 O -0.31 -4.56 10.15 -93.77 -0.95 -5.51 16 4 C 0.03 0.45 6.71 22.57 0.15 0.61 16 5 C 0.15 2.65 10.21 84.74 0.87 3.52 16 6 N -0.51 -13.43 9.14 -192.78 -1.76 -15.19 16 7 C 0.43 12.87 7.44 132.97 0.99 13.86 16 8 N -0.69 -23.22 5.11 -324.55 -1.66 -24.88 16 9 C 0.17 6.41 2.32 44.96 0.10 6.51 16 10 H 0.08 3.02 7.64 -2.39 -0.02 3.00 16 11 C -0.10 -4.08 5.52 30.66 0.17 -3.91 16 12 C -0.01 -0.48 5.60 30.11 0.17 -0.31 16 13 C -0.50 -25.88 5.51 -16.17 -0.09 -25.97 16 14 C 0.02 1.21 5.46 84.66 0.46 1.68 16 15 N -0.93 -54.42 12.73 21.45 0.27 -54.15 16 16 Si 0.94 42.84 27.27 68.60 1.87 44.71 16 17 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 18 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 19 H -0.25 -10.65 6.46 99.48 0.64 -10.01 16 20 C 0.01 0.65 5.97 30.11 0.18 0.83 16 21 C -0.11 -4.48 5.40 30.66 0.17 -4.31 16 22 C -0.16 -4.27 6.88 36.60 0.25 -4.02 16 23 N 0.06 1.81 4.45 -45.95 -0.20 1.60 16 24 O -0.15 -4.52 18.53 18.89 0.35 -4.17 16 25 O -0.23 -7.75 15.73 18.89 0.30 -7.45 16 26 C 0.00 -0.10 9.62 22.53 0.22 0.12 16 27 H 0.10 0.19 8.14 -2.38 -0.02 0.17 16 28 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.08 0.41 7.68 -2.39 -0.02 0.39 16 31 H 0.08 0.41 7.67 -2.38 -0.02 0.39 16 32 H 0.21 2.06 6.30 -2.91 -0.02 2.04 16 33 H 0.42 14.45 5.03 -98.47 -0.50 13.96 16 34 H 0.05 1.98 8.02 -2.39 -0.02 1.96 16 35 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 36 H 0.03 1.39 4.78 -2.39 -0.01 1.38 16 37 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 38 H 0.26 14.66 8.31 -92.70 -0.77 13.89 16 39 H 0.03 1.67 7.07 -2.39 -0.02 1.65 16 40 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 41 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.18 3.16 7.70 -2.91 -0.02 3.13 16 Total: -1.00 -63.96 351.53 3.47 -60.48 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.49 Total: 15.40 kcal Atomic # 6 Polarization: -15.62 SS G_CDS: 4.77 Total: -10.85 kcal Atomic # 7 Polarization: -89.26 SS G_CDS: -3.35 Total: -92.62 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.30 Total: -17.13 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 1.87 Total: 44.71 kcal Total: -63.96 3.47 -60.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167841047.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.326 kcal (2) G-P(sol) polarization free energy of solvation -63.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds