Wall clock time and date at job start Tue Mar 31 2020 13:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.47315 * 2 1 4 4 C 1.34932 * 117.00268 * 180.02562 * 3 2 1 5 5 O 1.21657 * 120.00218 * 0.02562 * 4 3 2 6 6 C 1.41707 * 120.00255 * 179.97438 * 4 3 2 7 7 C 1.35162 * 120.00052 * 180.02562 * 6 4 3 8 8 C 1.46874 * 120.00016 * 180.02562 * 7 6 4 9 9 C 1.40043 * 120.09138 * 179.97438 * 8 7 6 10 10 C 1.37601 * 119.94155 * 179.97438 * 9 8 7 11 11 C 1.39178 * 120.12309 * 359.97438 * 10 9 8 12 12 N 1.39229 * 119.91288 * 179.97438 * 11 10 9 13 13 C 1.46504 * 119.99443 * 0.02562 * 12 11 10 14 14 C 1.53006 * 109.46883 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47127 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47242 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99967 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00542 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99408 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00405 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.46854 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47025 * 119.99859 * 20 18 16 23 23 H 1.48498 * 109.46692 * 239.99831 * 20 18 16 24 24 C 1.39431 * 120.17646 * 0.28031 * 11 10 9 25 25 F 1.35106 * 119.96764 * 179.71696 * 24 11 10 26 26 C 1.37738 * 120.05900 * 359.48684 * 24 11 10 27 27 H 1.08997 * 109.47184 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46983 * 299.99691 * 1 2 3 29 29 H 1.08997 * 109.47377 * 59.99882 * 1 2 3 30 30 H 1.08998 * 109.46883 * 240.00109 * 2 1 3 31 31 H 1.09001 * 109.47194 * 120.00594 * 2 1 3 32 32 H 1.07995 * 119.99789 * 0.02562 * 6 4 3 33 33 H 1.08002 * 120.00460 * 0.02562 * 7 6 4 34 34 H 1.08005 * 120.02754 * 0.02562 * 9 8 7 35 35 H 1.07991 * 119.93488 * 180.02562 * 10 9 8 36 36 H 0.96992 * 120.00590 * 180.02562 * 12 11 10 37 37 H 1.09001 * 109.46891 * 60.00185 * 13 12 11 38 38 H 1.08993 * 109.47378 * 299.99557 * 13 12 11 39 39 H 1.09001 * 109.46801 * 300.00349 * 14 13 12 40 40 H 1.09001 * 109.46998 * 59.99945 * 14 13 12 41 41 H 1.08996 * 109.46952 * 300.00302 * 15 14 13 42 42 H 1.09001 * 109.46832 * 60.00321 * 15 14 13 43 43 H 0.96999 * 119.99910 * 180.02562 * 19 18 16 44 44 H 1.08004 * 120.05722 * 180.25353 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3440 1.5241 -0.0005 5 8 4.0852 0.5593 -0.0015 6 6 3.8857 2.8335 -0.0011 7 6 5.2257 3.0106 -0.0022 8 6 5.7871 4.3678 -0.0022 9 6 7.1752 4.5535 -0.0028 10 6 7.6978 5.8263 -0.0033 11 6 6.8495 6.9297 -0.0039 12 7 7.3831 8.2157 -0.0039 13 6 8.8357 8.4060 -0.0039 14 6 9.1540 9.9026 -0.0046 15 6 10.6710 10.1013 -0.0053 16 6 10.9845 11.5753 -0.0053 17 1 10.1820 12.2981 -0.0045 18 6 12.2958 12.0013 -0.0064 19 7 13.2731 11.1211 -0.0069 20 14 12.6844 13.8284 -0.0057 21 1 11.4180 14.6037 -0.0046 22 1 13.4733 14.1662 1.2062 23 1 13.4709 14.1675 -1.2188 24 6 5.4668 6.7507 0.0020 25 9 4.6472 7.8248 0.0072 26 6 4.9356 5.4799 -0.0022 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.2279 3.6900 -0.0007 33 1 5.8836 2.1541 -0.0030 34 1 7.8348 3.6983 -0.0036 35 1 8.7682 5.9694 -0.0042 36 1 6.7931 8.9856 -0.0039 37 1 9.2626 7.9437 -0.8940 38 1 9.2627 7.9438 0.8860 39 1 8.7270 10.3644 -0.8948 40 1 8.7269 10.3652 0.8851 41 1 11.0983 9.6393 0.8847 42 1 11.0976 9.6387 -0.8953 43 1 14.1956 11.4207 -0.0073 44 1 3.8645 5.3412 -0.0018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168433466.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:35 Heat of formation + Delta-G solvation = -110.156242 kcal Electronic energy + Delta-G solvation = -24652.724127 eV Core-core repulsion = 20677.111317 eV Total energy + Delta-G solvation = -3975.612810 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.87096 -40.79937 -39.54226 -37.29058 -36.60435 -34.33611 -33.22922 -32.06895 -31.46145 -30.79428 -28.90884 -26.75254 -24.92906 -23.93703 -22.98336 -22.42723 -21.55711 -20.53957 -19.69230 -18.43907 -17.62311 -17.16472 -16.89989 -16.62643 -16.36583 -15.98328 -15.77618 -14.88468 -14.85155 -14.63621 -14.43925 -14.34118 -14.10352 -14.05874 -13.23872 -13.03931 -13.03573 -12.72117 -12.40465 -12.40385 -12.17269 -12.05797 -11.87162 -11.78214 -11.37129 -11.10402 -10.82253 -10.81898 -10.79364 -10.78257 -10.61529 -9.97426 -9.58994 -9.48311 -9.21584 -9.07896 -8.45752 -7.38311 -6.10540 -4.13578 0.16129 1.08014 1.63498 2.58192 2.82280 3.24890 3.29659 3.33141 3.37148 3.58683 4.07373 4.37629 4.38093 4.46136 4.55787 4.62576 4.80310 4.86393 4.88739 4.90166 5.10224 5.25947 5.30196 5.34245 5.38504 5.47432 5.53099 5.57252 5.60925 5.74484 5.81504 5.91067 5.96785 6.12097 6.21570 6.34514 6.39417 6.41959 6.61807 6.83895 7.12778 7.51825 7.56315 7.57113 7.62946 7.87469 8.28797 8.92879 9.51474 11.00758 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.042235 B = 0.001603 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.798737 B =17459.802447 C =18086.245257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.354 6.354 4 C 0.506 3.494 5 O -0.524 6.524 6 C -0.244 4.244 7 C 0.044 3.956 8 C -0.148 4.148 9 C -0.034 4.034 10 C -0.188 4.188 11 C 0.225 3.775 12 N -0.724 5.724 13 C 0.115 3.885 14 C -0.122 4.122 15 C 0.025 3.975 16 C -0.524 4.524 17 H 0.056 0.944 18 C 0.058 3.942 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 C 0.002 3.998 25 F -0.142 7.142 26 C -0.070 4.070 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.140 0.860 36 H 0.405 0.595 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.261 0.739 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.452 -19.563 0.009 29.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.013 4.013 3 O -0.271 6.271 4 C 0.355 3.645 5 O -0.416 6.416 6 C -0.263 4.263 7 C 0.025 3.975 8 C -0.150 4.150 9 C -0.053 4.053 10 C -0.211 4.211 11 C 0.115 3.885 12 N -0.348 5.348 13 C -0.008 4.008 14 C -0.160 4.160 15 C -0.013 4.013 16 C -0.562 4.562 17 H 0.074 0.926 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.022 4.022 25 F -0.121 7.121 26 C -0.090 4.090 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.153 0.847 35 H 0.158 0.842 36 H 0.241 0.759 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.071 0.929 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -20.860 -19.754 0.009 28.730 hybrid contribution -0.060 1.390 -0.002 1.391 sum -20.920 -18.364 0.008 27.837 Atomic orbital electron populations 1.21812 0.92658 1.02926 1.03536 1.22602 0.95373 0.80952 1.02405 1.86208 1.24479 1.31949 1.84483 1.19940 0.80466 0.90781 0.73312 1.90878 1.60070 1.43412 1.47281 1.21083 0.96224 0.94804 1.14222 1.22442 0.94546 0.95750 0.84762 1.18364 0.93076 0.91489 1.12106 1.21186 0.93606 0.96991 0.93525 1.20596 1.00063 0.90494 1.09922 1.18208 0.90463 0.87370 0.92482 1.45125 1.08361 1.03942 1.77346 1.21819 0.77697 0.99963 1.01340 1.21886 1.01811 0.91097 1.01206 1.19029 0.87437 0.97216 0.97592 1.21227 0.91965 0.92011 1.51011 0.92579 1.25015 0.96454 0.97756 0.95123 1.69962 0.99310 1.33439 1.50566 0.86520 0.78411 0.85335 0.77664 1.19725 1.20935 1.20941 1.16961 0.86027 0.83922 1.15324 1.91459 1.71689 1.53957 1.95029 1.21124 1.00539 0.89993 0.97322 0.90338 0.91481 0.91475 0.91564 0.91564 0.84445 0.84399 0.84749 0.84183 0.75940 0.91746 0.91740 0.92569 0.92567 0.96259 0.96254 0.92927 0.84337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 10.28 37.16 0.38 -0.38 16 2 C 0.06 0.47 6.10 37.16 0.23 0.69 16 3 O -0.35 -3.49 10.10 -41.13 -0.42 -3.91 16 4 C 0.51 5.50 7.69 32.06 0.25 5.74 16 5 O -0.52 -6.91 15.88 -19.39 -0.31 -7.22 16 6 C -0.24 -2.23 9.33 -39.35 -0.37 -2.60 16 7 C 0.04 0.39 9.41 -37.18 -0.35 0.04 16 8 C -0.15 -1.41 5.87 -105.04 -0.62 -2.03 16 9 C -0.03 -0.32 9.78 -39.14 -0.38 -0.70 16 10 C -0.19 -2.07 9.28 -39.46 -0.37 -2.44 16 11 C 0.23 2.81 6.66 -83.71 -0.56 2.25 16 12 N -0.72 -9.64 5.71 -58.54 -0.33 -9.97 16 13 C 0.11 1.70 4.90 -4.04 -0.02 1.68 16 14 C -0.12 -2.24 5.27 -26.73 -0.14 -2.39 16 15 C 0.02 0.60 4.97 -27.89 -0.14 0.46 16 16 C -0.52 -14.22 9.11 -34.44 -0.31 -14.54 16 17 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 20 Si 0.89 21.06 29.54 -169.99 -5.02 16.04 16 21 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C 0.00 0.02 7.30 -39.32 -0.29 -0.27 16 25 F -0.14 -1.82 16.62 2.25 0.04 -1.78 16 26 C -0.07 -0.71 9.38 -39.08 -0.37 -1.08 16 27 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 31 H 0.07 0.50 8.13 -51.93 -0.42 0.08 16 32 H 0.14 1.05 6.06 -52.49 -0.32 0.73 16 33 H 0.14 1.15 7.45 -52.49 -0.39 0.76 16 34 H 0.13 0.93 8.06 -52.48 -0.42 0.50 16 35 H 0.14 1.48 6.69 -52.49 -0.35 1.12 16 36 H 0.41 5.21 7.94 -40.82 -0.32 4.89 16 37 H 0.06 0.94 7.93 -51.93 -0.41 0.53 16 38 H 0.06 0.94 7.93 -51.93 -0.41 0.53 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 44 H 0.14 1.14 6.16 -52.48 -0.32 0.81 16 LS Contribution 380.77 15.07 5.74 5.74 Total: -1.00 -30.78 380.77 -9.01 -39.80 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -6.30 Total: 0.57 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: -3.15 Total: -14.04 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 0.40 Total: -35.20 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: -0.72 Total: -11.12 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.78 -9.01 -39.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433466.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.356 kcal (2) G-P(sol) polarization free energy of solvation -30.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds