Wall clock time and date at job start Tue Mar 31 2020 13:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42899 * 109.47315 * 2 1 4 4 C 1.34932 * 117.00268 * 180.02562 * 3 2 1 5 5 O 1.21657 * 120.00218 * 0.02562 * 4 3 2 6 6 C 1.41707 * 120.00255 * 179.97438 * 4 3 2 7 7 C 1.35162 * 120.00052 * 180.02562 * 6 4 3 8 8 C 1.46874 * 120.00016 * 180.02562 * 7 6 4 9 9 C 1.40043 * 120.09138 * 179.97438 * 8 7 6 10 10 C 1.37601 * 119.94155 * 179.97438 * 9 8 7 11 11 C 1.39178 * 120.12309 * 359.97438 * 10 9 8 12 12 N 1.39229 * 119.91288 * 179.97438 * 11 10 9 13 13 C 1.46504 * 119.99443 * 0.02562 * 12 11 10 14 14 C 1.53006 * 109.46883 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.47127 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.47242 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99967 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00542 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99408 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00405 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.46854 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47025 * 119.99859 * 20 18 16 23 23 H 1.48498 * 109.46692 * 239.99831 * 20 18 16 24 24 C 1.39431 * 120.17646 * 0.28031 * 11 10 9 25 25 F 1.35106 * 119.96764 * 179.71696 * 24 11 10 26 26 C 1.37738 * 120.05900 * 359.48684 * 24 11 10 27 27 H 1.08997 * 109.47184 * 180.02562 * 1 2 3 28 28 H 1.09007 * 109.46983 * 299.99691 * 1 2 3 29 29 H 1.08997 * 109.47377 * 59.99882 * 1 2 3 30 30 H 1.08998 * 109.46883 * 240.00109 * 2 1 3 31 31 H 1.09001 * 109.47194 * 120.00594 * 2 1 3 32 32 H 1.07995 * 119.99789 * 0.02562 * 6 4 3 33 33 H 1.08002 * 120.00460 * 0.02562 * 7 6 4 34 34 H 1.08005 * 120.02754 * 0.02562 * 9 8 7 35 35 H 1.07991 * 119.93488 * 180.02562 * 10 9 8 36 36 H 0.96992 * 120.00590 * 180.02562 * 12 11 10 37 37 H 1.09001 * 109.46891 * 60.00185 * 13 12 11 38 38 H 1.08993 * 109.47378 * 299.99557 * 13 12 11 39 39 H 1.09001 * 109.46801 * 300.00349 * 14 13 12 40 40 H 1.09001 * 109.46998 * 59.99945 * 14 13 12 41 41 H 1.08996 * 109.46952 * 300.00302 * 15 14 13 42 42 H 1.09001 * 109.46832 * 60.00321 * 15 14 13 43 43 H 0.96999 * 119.99910 * 180.02562 * 19 18 16 44 44 H 1.08004 * 120.05722 * 180.25353 * 26 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3440 1.5241 -0.0005 5 8 4.0852 0.5593 -0.0015 6 6 3.8857 2.8335 -0.0011 7 6 5.2257 3.0106 -0.0022 8 6 5.7871 4.3678 -0.0022 9 6 7.1752 4.5535 -0.0028 10 6 7.6978 5.8263 -0.0033 11 6 6.8495 6.9297 -0.0039 12 7 7.3831 8.2157 -0.0039 13 6 8.8357 8.4060 -0.0039 14 6 9.1540 9.9026 -0.0046 15 6 10.6710 10.1013 -0.0053 16 6 10.9845 11.5753 -0.0053 17 1 10.1820 12.2981 -0.0045 18 6 12.2958 12.0013 -0.0064 19 7 13.2731 11.1211 -0.0069 20 14 12.6844 13.8284 -0.0057 21 1 11.4180 14.6037 -0.0046 22 1 13.4733 14.1662 1.2062 23 1 13.4709 14.1675 -1.2188 24 6 5.4668 6.7507 0.0020 25 9 4.6472 7.8248 0.0072 26 6 4.9356 5.4799 -0.0022 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.2279 3.6900 -0.0007 33 1 5.8836 2.1541 -0.0030 34 1 7.8348 3.6983 -0.0036 35 1 8.7682 5.9694 -0.0042 36 1 6.7931 8.9856 -0.0039 37 1 9.2626 7.9437 -0.8940 38 1 9.2627 7.9438 0.8860 39 1 8.7270 10.3644 -0.8948 40 1 8.7269 10.3652 0.8851 41 1 11.0983 9.6393 0.8847 42 1 11.0976 9.6387 -0.8953 43 1 14.1956 11.4207 -0.0073 44 1 3.8645 5.3412 -0.0018 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168433466.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:09:35 Heat of formation + Delta-G solvation = -125.325075 kcal Electronic energy + Delta-G solvation = -24653.381897 eV Core-core repulsion = 20677.111317 eV Total energy + Delta-G solvation = -3976.270580 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.79820 -41.59934 -40.40434 -38.14998 -37.61983 -35.80314 -34.54536 -33.13724 -32.48060 -31.63887 -30.01100 -28.19079 -25.95581 -25.09715 -23.70473 -23.60978 -22.39240 -22.05352 -20.50535 -19.23445 -18.63531 -18.48833 -17.95677 -17.62998 -17.35070 -16.91650 -16.75256 -16.49878 -16.19658 -15.68252 -15.47400 -15.10602 -14.98673 -14.78893 -14.29668 -14.23261 -13.98102 -13.78296 -13.57924 -13.43470 -13.33191 -12.95422 -12.83664 -12.72533 -12.60987 -12.43985 -12.34186 -12.09789 -12.05522 -11.63341 -11.51498 -11.48001 -11.45095 -11.19307 -10.56720 -10.35669 -9.90009 -8.31414 -8.21808 -6.32092 -0.62373 0.25595 0.80292 1.39506 1.40758 1.52906 1.88952 2.02427 2.26438 2.41787 2.77668 3.12504 3.21503 3.59786 3.72768 4.01412 4.02633 4.08716 4.12837 4.13903 4.18778 4.20187 4.32360 4.39730 4.50749 4.60078 4.77466 4.83628 4.93390 4.93736 4.95935 5.00825 5.06586 5.13805 5.16170 5.17868 5.36673 5.48693 5.49191 5.57959 5.69803 5.70340 5.82917 6.10967 6.24229 6.56636 6.77237 6.84730 7.37451 8.89955 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.042235 B = 0.001603 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.798737 B =17459.802447 C =18086.245257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 O -0.358 6.358 4 C 0.504 3.496 5 O -0.553 6.553 6 C -0.244 4.244 7 C 0.050 3.950 8 C -0.141 4.141 9 C -0.028 4.028 10 C -0.195 4.195 11 C 0.207 3.793 12 N -0.730 5.730 13 C 0.132 3.868 14 C -0.107 4.107 15 C 0.027 3.973 16 C -0.545 4.545 17 H 0.059 0.941 18 C 0.003 3.997 19 N -0.930 5.930 20 Si 0.961 3.039 21 H -0.263 1.263 22 H -0.279 1.279 23 H -0.279 1.279 24 C -0.013 4.013 25 F -0.150 7.150 26 C -0.068 4.068 27 H 0.098 0.902 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.154 0.846 33 H 0.145 0.855 34 H 0.162 0.838 35 H 0.143 0.857 36 H 0.406 0.594 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.057 0.943 41 H -0.001 1.001 42 H -0.001 1.001 43 H 0.264 0.736 44 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.868 -20.047 0.010 30.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 O -0.275 6.275 4 C 0.355 3.645 5 O -0.448 6.448 6 C -0.263 4.263 7 C 0.032 3.968 8 C -0.143 4.143 9 C -0.047 4.047 10 C -0.218 4.218 11 C 0.098 3.902 12 N -0.355 5.355 13 C 0.008 3.992 14 C -0.145 4.145 15 C -0.011 4.011 16 C -0.583 4.583 17 H 0.077 0.923 18 C -0.195 4.195 19 N -0.570 5.570 20 Si 0.786 3.214 21 H -0.187 1.187 22 H -0.204 1.204 23 H -0.205 1.205 24 C -0.036 4.036 25 F -0.129 7.129 26 C -0.088 4.088 27 H 0.117 0.883 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.171 0.829 33 H 0.163 0.837 34 H 0.180 0.820 35 H 0.160 0.840 36 H 0.241 0.759 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.017 0.983 42 H 0.017 0.983 43 H 0.072 0.928 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -22.320 -20.255 0.010 30.141 hybrid contribution 0.305 1.397 -0.002 1.430 sum -22.016 -18.858 0.008 28.988 Atomic orbital electron populations 1.21827 0.90546 1.04308 1.03656 1.22858 0.97060 0.79996 1.02285 1.86213 1.23924 1.33250 1.84099 1.20235 0.80673 0.91026 0.72613 1.90864 1.60682 1.44393 1.48816 1.21213 0.96604 0.94578 1.13908 1.22453 0.94619 0.95496 0.84259 1.18479 0.93194 0.91582 1.11076 1.21492 0.93995 0.97213 0.91989 1.20752 1.00160 0.90841 1.10014 1.18389 0.90980 0.87147 0.93635 1.44863 1.07303 1.04583 1.78774 1.21436 0.79035 0.97184 1.01523 1.21598 0.97733 0.93875 1.01335 1.18916 0.91134 0.95479 0.95552 1.21707 0.92315 0.93663 1.50583 0.92307 1.25906 0.96424 1.02452 0.94754 1.70079 0.99727 1.35618 1.51602 0.85455 0.78425 0.79764 0.77754 1.18747 1.20450 1.20456 1.17145 0.85837 0.84376 1.16277 1.91435 1.71847 1.54468 1.95200 1.21357 1.01708 0.89335 0.96355 0.88347 0.91332 0.91326 0.91723 0.91719 0.82869 0.83736 0.82044 0.83974 0.75887 0.91635 0.91629 0.92403 0.92400 0.98269 0.98263 0.92752 0.82447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 71.98 0.74 -0.48 16 2 C 0.05 0.74 6.10 71.98 0.44 1.18 16 3 O -0.36 -6.63 10.10 -58.47 -0.59 -7.23 16 4 C 0.50 10.33 7.69 68.68 0.53 10.85 16 5 O -0.55 -14.12 15.88 19.32 0.31 -13.82 16 6 C -0.24 -3.97 9.33 22.42 0.21 -3.76 16 7 C 0.05 0.78 9.41 23.82 0.22 1.00 16 8 C -0.14 -2.36 5.87 -20.14 -0.12 -2.48 16 9 C -0.03 -0.46 9.78 22.56 0.22 -0.24 16 10 C -0.19 -4.04 9.28 22.35 0.21 -3.83 16 11 C 0.21 4.98 6.66 38.48 0.26 5.24 16 12 N -0.73 -19.12 5.71 -339.11 -1.94 -21.06 16 13 C 0.13 3.90 4.90 86.38 0.42 4.32 16 14 C -0.11 -3.97 5.27 30.60 0.16 -3.81 16 15 C 0.03 1.32 4.97 29.85 0.15 1.47 16 16 C -0.54 -29.86 9.11 25.60 0.23 -29.63 16 17 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 18 C 0.00 0.15 5.46 84.65 0.46 0.62 16 19 N -0.93 -54.86 13.29 21.45 0.28 -54.57 16 20 Si 0.96 43.20 29.54 68.60 2.03 45.23 16 21 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 22 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 24 C -0.01 -0.29 7.30 22.44 0.16 -0.13 16 25 F -0.15 -3.73 16.62 44.97 0.75 -2.99 16 26 C -0.07 -1.25 9.38 22.59 0.21 -1.04 16 27 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 31 H 0.06 0.93 8.13 -2.39 -0.02 0.91 16 32 H 0.15 1.94 6.06 -2.91 -0.02 1.93 16 33 H 0.15 2.09 7.45 -2.91 -0.02 2.07 16 34 H 0.16 1.74 8.06 -2.91 -0.02 1.71 16 35 H 0.14 2.85 6.69 -2.91 -0.02 2.83 16 36 H 0.41 10.34 7.94 -92.71 -0.74 9.60 16 37 H 0.07 1.91 7.93 -2.39 -0.02 1.89 16 38 H 0.07 1.92 7.93 -2.39 -0.02 1.90 16 39 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 42 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 43 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 44 H 0.16 2.19 6.16 -2.91 -0.02 2.17 16 Total: -1.00 -66.12 380.77 5.63 -60.50 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: 0.28 Total: 14.66 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: 4.51 Total: -20.72 kcal Atomic # 7 Polarization: -73.98 SS G_CDS: -1.65 Total: -75.64 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.28 Total: -21.04 kcal Atomic # 9 Polarization: -3.73 SS G_CDS: 0.75 Total: -2.99 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -66.12 5.63 -60.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168433466.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.827 kcal (2) G-P(sol) polarization free energy of solvation -66.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds