Wall clock time and date at job start Tue Mar 31 2020 13:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45200 * 109.47119 * 2 1 4 4 C 1.34229 * 116.99925 * 180.02562 * 3 2 1 5 5 O 1.20821 * 119.99991 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99745 * 180.02562 * 4 3 2 7 7 C 1.52997 * 112.85027 * 309.66016 * 6 4 3 8 8 N 1.46506 * 109.46849 * 50.33510 * 7 6 4 9 9 C 1.39890 * 119.99730 * 180.02562 * 8 7 6 10 10 C 1.39091 * 119.96172 * 0.25248 * 9 8 7 11 11 C 1.38629 * 120.46508 * 180.30563 * 10 9 8 12 12 C 1.37577 * 120.38336 * 359.72614 * 11 10 9 13 13 C 1.40790 * 119.91170 * 359.97438 * 12 11 10 14 14 C 1.41313 * 120.22776 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00131 * 155.13873 * 14 13 12 16 16 C 1.39927 * 120.00395 * 335.13130 * 14 13 12 17 17 N 1.30857 * 119.99614 * 342.30236 * 16 14 13 18 18 Si 1.86792 * 120.00387 * 162.29984 * 16 14 13 19 19 H 1.48506 * 109.47125 * 94.65867 * 18 16 14 20 20 H 1.48499 * 109.47283 * 214.65816 * 18 16 14 21 21 H 1.48503 * 109.47093 * 334.66121 * 18 16 14 22 22 C 1.38596 * 119.95918 * 180.02562 * 9 8 7 23 23 F 1.35096 * 120.19157 * 359.97003 * 22 9 8 24 24 C 1.53775 * 113.61567 * 80.85663 * 6 4 3 25 25 C 1.53962 * 87.01998 * 89.22729 * 24 6 4 26 26 C 1.53779 * 113.61341 * 178.46725 * 6 4 3 27 27 H 1.09008 * 109.47163 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46998 * 299.99812 * 1 2 3 29 29 H 1.09000 * 109.47273 * 59.99898 * 1 2 3 30 30 H 1.08999 * 109.46998 * 240.00188 * 2 1 3 31 31 H 1.09000 * 109.47273 * 120.00102 * 2 1 3 32 32 H 1.09000 * 109.47446 * 290.34218 * 7 6 4 33 33 H 1.08991 * 109.47503 * 170.33187 * 7 6 4 34 34 H 0.96995 * 120.00398 * 359.97438 * 8 7 6 35 35 H 1.07994 * 119.77069 * 0.02881 * 10 9 8 36 36 H 1.08000 * 119.80327 * 179.69810 * 11 10 9 37 37 H 1.08003 * 120.04281 * 180.02562 * 12 11 10 38 38 H 0.96994 * 120.00120 * 179.97438 * 17 16 14 39 39 H 1.08997 * 113.61552 * 203.74586 * 24 6 4 40 40 H 1.08995 * 113.61724 * 334.65586 * 24 6 4 41 41 H 1.08992 * 113.54086 * 270.81248 * 25 24 6 42 42 H 1.08999 * 113.66560 * 139.92483 * 25 24 6 43 43 H 1.09002 * 113.61068 * 25.34356 * 26 6 4 44 44 H 1.08993 * 113.61614 * 156.25031 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 6 3.3157 3.8310 -1.0846 8 7 1.8539 3.7615 -1.0153 9 6 1.0753 4.4987 -1.9137 10 6 1.6898 5.2933 -2.8758 11 6 0.9283 6.0331 -3.7673 12 6 -0.4456 5.9860 -3.7148 13 6 -1.0843 5.1822 -2.7515 14 6 -2.4952 5.1292 -2.6913 15 1 -2.9856 4.2646 -2.2689 16 6 -3.2569 6.1971 -3.1787 17 7 -2.6999 7.3663 -3.3656 18 14 -5.0686 5.9535 -3.5625 19 1 -5.8824 6.3619 -2.3894 20 1 -5.4417 6.7827 -4.7366 21 1 -5.3221 4.5222 -3.8667 22 6 -0.3075 4.4328 -1.8471 23 9 -0.9066 3.6577 -0.9168 24 6 3.9499 3.5914 1.3915 25 6 5.3427 2.9601 1.5705 26 6 5.4577 2.9683 0.0370 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.6495 3.4898 -2.0645 33 1 3.6382 4.8604 -0.9289 34 1 1.4260 3.2038 -0.3469 35 1 2.7677 5.3378 -2.9259 36 1 1.4166 6.6503 -4.5069 37 1 -1.0335 6.5643 -4.4123 38 1 -3.2277 8.1065 -3.7038 39 1 3.9650 4.6809 1.3616 40 1 3.1992 3.1961 2.0756 41 1 5.3148 1.9591 2.0009 42 1 6.0596 3.6151 2.0656 43 1 5.9224 2.0705 -0.3708 44 1 5.8858 3.8871 -0.3638 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169555756.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:57 Heat of formation + Delta-G solvation = -95.283809 kcal Electronic energy + Delta-G solvation = -27776.831871 eV Core-core repulsion = 23801.863978 eV Total energy + Delta-G solvation = -3974.967893 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -47.00385 -41.21203 -38.66348 -37.50256 -36.44755 -34.85992 -33.11002 -31.67581 -29.54173 -29.33917 -26.55139 -25.95299 -25.32318 -24.45264 -22.80733 -21.85742 -20.68530 -20.37820 -19.45440 -17.65176 -17.20220 -16.72100 -16.35376 -15.95999 -15.75895 -15.01835 -14.86398 -14.65902 -14.37697 -14.15567 -13.93162 -13.66881 -13.52610 -13.08055 -12.90938 -12.79610 -12.58894 -12.43909 -12.04985 -11.84348 -11.75005 -11.59005 -11.51040 -11.24830 -11.12548 -10.98588 -10.80289 -10.58938 -10.58653 -10.52920 -10.36236 -10.30204 -9.81186 -9.49569 -9.30164 -8.79345 -7.34651 -6.80067 -6.20725 -4.37104 2.11457 2.54619 2.75029 3.05052 3.07555 3.12919 3.24782 3.88293 3.94606 4.30031 4.42900 4.58646 4.62312 4.65310 4.73553 4.93713 4.99240 5.23407 5.26207 5.46761 5.54898 5.57874 5.65413 5.70454 5.74035 5.77745 5.85163 5.85638 5.97585 6.03244 6.08042 6.17780 6.26258 6.46822 6.70093 6.92402 6.99704 7.19995 7.33776 7.64834 7.70768 7.78205 8.05827 8.14912 8.35803 8.61918 8.68708 8.82375 9.00911 10.15703 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017611 B = 0.003697 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.516663 B = 7571.601484 C = 8647.887349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.066 3.934 3 O -0.344 6.344 4 C 0.493 3.507 5 O -0.510 6.510 6 C -0.098 4.098 7 C 0.156 3.844 8 N -0.755 5.755 9 C 0.207 3.793 10 C -0.289 4.289 11 C -0.078 4.078 12 C -0.184 4.184 13 C 0.118 3.882 14 C -0.453 4.453 15 H 0.081 0.919 16 C 0.078 3.922 17 N -0.787 5.787 18 Si 0.909 3.091 19 H -0.270 1.270 20 H -0.275 1.275 21 H -0.260 1.260 22 C -0.094 4.094 23 F -0.166 7.166 24 C -0.117 4.117 25 C -0.144 4.144 26 C -0.111 4.111 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.401 0.599 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.121 0.879 38 H 0.281 0.719 39 H 0.102 0.898 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.084 0.916 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.348 -7.138 6.323 14.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.008 4.008 3 O -0.260 6.260 4 C 0.335 3.665 5 O -0.398 6.398 6 C -0.100 4.100 7 C 0.031 3.969 8 N -0.394 5.394 9 C 0.107 3.893 10 C -0.312 4.312 11 C -0.097 4.097 12 C -0.205 4.205 13 C 0.114 3.886 14 C -0.482 4.482 15 H 0.099 0.901 16 C -0.140 4.140 17 N -0.411 5.411 18 Si 0.733 3.267 19 H -0.195 1.195 20 H -0.200 1.200 21 H -0.183 1.183 22 C -0.119 4.119 23 F -0.146 7.146 24 C -0.154 4.154 25 C -0.181 4.181 26 C -0.149 4.149 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.240 0.760 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.138 0.862 38 H 0.092 0.908 39 H 0.120 0.880 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.103 0.897 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 10.620 -7.202 6.243 14.270 hybrid contribution -1.064 -0.467 0.142 1.170 sum 9.557 -7.669 6.385 13.817 Atomic orbital electron populations 1.21826 0.92096 1.02718 1.04586 1.23060 0.95869 0.79783 1.02079 1.86456 1.23813 1.32499 1.83240 1.22864 0.80790 0.91186 0.71616 1.90618 1.60606 1.42726 1.45833 1.22042 0.97938 0.90162 0.99846 1.20992 0.82595 0.97565 0.95796 1.44531 1.02817 1.53124 1.38886 1.17421 0.88417 0.92724 0.90738 1.19728 0.97144 1.10142 1.04201 1.20460 0.94272 0.97612 0.97352 1.21001 0.92625 1.05338 1.01536 1.17398 0.93177 0.89350 0.88659 1.19487 0.90997 1.02962 1.34795 0.90135 1.25898 1.01235 0.94184 0.92725 1.69857 1.38504 1.00749 1.32022 0.86286 0.81791 0.79831 0.78781 1.19511 1.19967 1.18340 1.17243 0.87994 1.08877 0.97753 1.91200 1.84293 1.74316 1.64765 1.23020 0.97797 1.01352 0.93239 1.22949 0.97219 1.01518 0.96404 1.22878 0.91125 1.03871 0.97013 0.90431 0.91301 0.90601 0.91348 0.91534 0.92630 0.91379 0.75970 0.88849 0.89069 0.86155 0.90803 0.87964 0.90738 0.89972 0.90526 0.89717 0.88271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 10.29 37.16 0.38 -1.45 16 2 C 0.07 0.83 6.19 37.16 0.23 1.06 16 3 O -0.34 -5.22 7.26 -39.26 -0.28 -5.50 16 4 C 0.49 7.25 6.72 36.01 0.24 7.49 16 5 O -0.51 -8.13 15.58 -18.75 -0.29 -8.42 16 6 C -0.10 -1.24 1.04 -154.85 -0.16 -1.40 16 7 C 0.16 2.31 4.35 -4.04 -0.02 2.29 16 8 N -0.75 -14.15 5.28 -58.61 -0.31 -14.46 16 9 C 0.21 4.71 6.65 -83.73 -0.56 4.15 16 10 C -0.29 -6.34 9.32 -39.12 -0.36 -6.70 16 11 C -0.08 -1.79 10.01 -39.68 -0.40 -2.19 16 12 C -0.18 -4.75 8.69 -38.86 -0.34 -5.09 16 13 C 0.12 3.20 5.57 -106.79 -0.60 2.60 16 14 C -0.45 -12.27 8.78 -37.78 -0.33 -12.61 16 15 H 0.08 2.16 7.74 -52.48 -0.41 1.75 16 16 C 0.08 1.96 5.14 -17.33 -0.09 1.88 16 17 N -0.79 -20.14 10.97 55.55 0.61 -19.53 16 18 Si 0.91 18.69 29.59 -169.99 -5.03 13.66 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 21 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 22 C -0.09 -2.42 7.31 -38.47 -0.28 -2.70 16 23 F -0.17 -4.19 16.08 2.25 0.04 -4.15 16 24 C -0.12 -1.25 7.23 -25.83 -0.19 -1.44 16 25 C -0.14 -1.35 7.76 -25.82 -0.20 -1.55 16 26 C -0.11 -1.13 7.02 -25.92 -0.18 -1.31 16 27 H 0.08 0.71 8.14 -51.92 -0.42 0.29 16 28 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 31 H 0.07 0.76 8.13 -51.93 -0.42 0.33 16 32 H 0.06 0.84 7.93 -51.93 -0.41 0.43 16 33 H 0.07 0.94 7.79 -51.93 -0.40 0.54 16 34 H 0.40 7.55 5.31 -40.82 -0.22 7.33 16 35 H 0.09 1.80 6.70 -52.49 -0.35 1.44 16 36 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 37 H 0.12 3.17 6.18 -52.48 -0.32 2.85 16 38 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 39 H 0.10 1.02 7.99 -51.93 -0.41 0.60 16 40 H 0.07 0.83 8.09 -51.93 -0.42 0.41 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.08 0.93 7.42 -51.93 -0.39 0.54 16 44 H 0.10 0.82 8.10 -51.93 -0.42 0.40 16 LS Contribution 364.73 15.07 5.50 5.50 Total: -1.00 -29.49 364.73 -8.89 -38.38 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -6.27 Total: 11.49 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: -2.85 Total: -16.96 kcal Atomic # 7 Polarization: -34.29 SS G_CDS: 0.30 Total: -33.99 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: -0.58 Total: -13.93 kcal Atomic # 9 Polarization: -4.19 SS G_CDS: 0.04 Total: -4.15 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.49 -8.89 -38.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169555756.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.900 kcal (2) G-P(sol) polarization free energy of solvation -29.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds