Wall clock time and date at job start Tue Mar 31 2020 13:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45200 * 109.47119 * 2 1 4 4 C 1.34229 * 116.99925 * 180.02562 * 3 2 1 5 5 O 1.20821 * 119.99991 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99745 * 180.02562 * 4 3 2 7 7 C 1.52997 * 112.85027 * 309.66016 * 6 4 3 8 8 N 1.46506 * 109.46849 * 50.33510 * 7 6 4 9 9 C 1.39890 * 119.99730 * 180.02562 * 8 7 6 10 10 C 1.39091 * 119.96172 * 0.25248 * 9 8 7 11 11 C 1.38629 * 120.46508 * 180.30563 * 10 9 8 12 12 C 1.37577 * 120.38336 * 359.72614 * 11 10 9 13 13 C 1.40790 * 119.91170 * 359.97438 * 12 11 10 14 14 C 1.41313 * 120.22776 * 179.97438 * 13 12 11 15 15 H 1.08005 * 120.00131 * 155.13873 * 14 13 12 16 16 C 1.39927 * 120.00395 * 335.13130 * 14 13 12 17 17 N 1.30857 * 119.99614 * 342.30236 * 16 14 13 18 18 Si 1.86792 * 120.00387 * 162.29984 * 16 14 13 19 19 H 1.48506 * 109.47125 * 94.65867 * 18 16 14 20 20 H 1.48499 * 109.47283 * 214.65816 * 18 16 14 21 21 H 1.48503 * 109.47093 * 334.66121 * 18 16 14 22 22 C 1.38596 * 119.95918 * 180.02562 * 9 8 7 23 23 F 1.35096 * 120.19157 * 359.97003 * 22 9 8 24 24 C 1.53775 * 113.61567 * 80.85663 * 6 4 3 25 25 C 1.53962 * 87.01998 * 89.22729 * 24 6 4 26 26 C 1.53779 * 113.61341 * 178.46725 * 6 4 3 27 27 H 1.09008 * 109.47163 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46998 * 299.99812 * 1 2 3 29 29 H 1.09000 * 109.47273 * 59.99898 * 1 2 3 30 30 H 1.08999 * 109.46998 * 240.00188 * 2 1 3 31 31 H 1.09000 * 109.47273 * 120.00102 * 2 1 3 32 32 H 1.09000 * 109.47446 * 290.34218 * 7 6 4 33 33 H 1.08991 * 109.47503 * 170.33187 * 7 6 4 34 34 H 0.96995 * 120.00398 * 359.97438 * 8 7 6 35 35 H 1.07994 * 119.77069 * 0.02881 * 10 9 8 36 36 H 1.08000 * 119.80327 * 179.69810 * 11 10 9 37 37 H 1.08003 * 120.04281 * 180.02562 * 12 11 10 38 38 H 0.96994 * 120.00120 * 179.97438 * 17 16 14 39 39 H 1.08997 * 113.61552 * 203.74586 * 24 6 4 40 40 H 1.08995 * 113.61724 * 334.65586 * 24 6 4 41 41 H 1.08992 * 113.54086 * 270.81248 * 25 24 6 42 42 H 1.08999 * 113.66560 * 139.92483 * 25 24 6 43 43 H 1.09002 * 113.61068 * 25.34356 * 26 6 4 44 44 H 1.08993 * 113.61614 * 156.25031 * 26 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0000 7 6 3.3157 3.8310 -1.0846 8 7 1.8539 3.7615 -1.0153 9 6 1.0753 4.4987 -1.9137 10 6 1.6898 5.2933 -2.8758 11 6 0.9283 6.0331 -3.7673 12 6 -0.4456 5.9860 -3.7148 13 6 -1.0843 5.1822 -2.7515 14 6 -2.4952 5.1292 -2.6913 15 1 -2.9856 4.2646 -2.2689 16 6 -3.2569 6.1971 -3.1787 17 7 -2.6999 7.3663 -3.3656 18 14 -5.0686 5.9535 -3.5625 19 1 -5.8824 6.3619 -2.3894 20 1 -5.4417 6.7827 -4.7366 21 1 -5.3221 4.5222 -3.8667 22 6 -0.3075 4.4328 -1.8471 23 9 -0.9066 3.6577 -0.9168 24 6 3.9499 3.5914 1.3915 25 6 5.3427 2.9601 1.5705 26 6 5.4577 2.9683 0.0370 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.6495 3.4898 -2.0645 33 1 3.6382 4.8604 -0.9289 34 1 1.4260 3.2038 -0.3469 35 1 2.7677 5.3378 -2.9259 36 1 1.4166 6.6503 -4.5069 37 1 -1.0335 6.5643 -4.4123 38 1 -3.2277 8.1065 -3.7038 39 1 3.9650 4.6809 1.3616 40 1 3.1992 3.1961 2.0756 41 1 5.3148 1.9591 2.0009 42 1 6.0596 3.6151 2.0656 43 1 5.9224 2.0705 -0.3708 44 1 5.8858 3.8871 -0.3638 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169555756.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:57 Heat of formation + Delta-G solvation = -109.541258 kcal Electronic energy + Delta-G solvation = -27777.450120 eV Core-core repulsion = 23801.863978 eV Total energy + Delta-G solvation = -3975.586142 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.96780 -42.28413 -39.75279 -39.18388 -37.66637 -36.48536 -34.84077 -32.73069 -31.40322 -30.78752 -27.99275 -27.23361 -26.75305 -25.68416 -23.91624 -22.93933 -22.48552 -22.06110 -20.46865 -19.27428 -18.63152 -17.93800 -17.74307 -17.48145 -17.18465 -16.80012 -16.29307 -15.92312 -15.90722 -15.43465 -15.19481 -15.16656 -14.80975 -14.77091 -14.51564 -13.81162 -13.77702 -13.63773 -13.37604 -13.29134 -13.14362 -12.99931 -12.83951 -12.71914 -12.60419 -12.44536 -12.15202 -12.03442 -11.77927 -11.61385 -11.49392 -11.41197 -11.38675 -11.27913 -11.09958 -10.49878 -9.26838 -8.66950 -7.93710 -6.36854 0.92693 0.98351 1.20192 1.38237 1.50141 1.51581 1.55898 2.21309 2.61559 2.73671 3.40789 3.43071 3.57462 3.68568 3.68893 3.80323 3.92199 3.97842 4.16205 4.23845 4.37032 4.51927 4.56341 4.64722 4.73734 4.78061 4.78973 4.82925 4.89527 4.96114 5.02268 5.05240 5.07317 5.09387 5.14807 5.31771 5.32569 5.43775 5.53497 5.79749 5.93821 6.14590 6.23578 6.50088 6.59024 6.77251 6.87271 6.98419 7.17363 8.30997 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017611 B = 0.003697 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.516663 B = 7571.601484 C = 8647.887349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.061 3.939 3 O -0.362 6.362 4 C 0.488 3.512 5 O -0.526 6.526 6 C -0.105 4.105 7 C 0.152 3.848 8 N -0.750 5.750 9 C 0.213 3.787 10 C -0.283 4.283 11 C -0.072 4.072 12 C -0.213 4.213 13 C 0.090 3.910 14 C -0.495 4.495 15 H 0.066 0.934 16 C 0.041 3.959 17 N -0.813 5.813 18 Si 0.981 3.019 19 H -0.263 1.263 20 H -0.258 1.258 21 H -0.263 1.263 22 C -0.130 4.130 23 F -0.173 7.173 24 C -0.115 4.115 25 C -0.133 4.133 26 C -0.102 4.102 27 H 0.107 0.893 28 H 0.065 0.935 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.400 0.600 35 H 0.130 0.870 36 H 0.122 0.878 37 H 0.107 0.893 38 H 0.291 0.709 39 H 0.116 0.884 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.102 0.898 43 H 0.075 0.925 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.995 -6.706 6.593 15.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.012 4.012 3 O -0.278 6.278 4 C 0.332 3.668 5 O -0.416 6.416 6 C -0.106 4.106 7 C 0.028 3.972 8 N -0.386 5.386 9 C 0.111 3.889 10 C -0.307 4.307 11 C -0.090 4.090 12 C -0.234 4.234 13 C 0.086 3.914 14 C -0.524 4.524 15 H 0.084 0.916 16 C -0.175 4.175 17 N -0.438 5.438 18 Si 0.801 3.199 19 H -0.187 1.187 20 H -0.182 1.182 21 H -0.186 1.186 22 C -0.155 4.155 23 F -0.152 7.152 24 C -0.153 4.153 25 C -0.171 4.171 26 C -0.140 4.140 27 H 0.125 0.875 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.075 0.925 33 H 0.106 0.894 34 H 0.238 0.762 35 H 0.147 0.853 36 H 0.140 0.860 37 H 0.124 0.876 38 H 0.102 0.898 39 H 0.134 0.866 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.120 0.880 43 H 0.094 0.906 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 12.311 -6.781 6.533 15.499 hybrid contribution -1.434 -0.662 0.106 1.583 sum 10.877 -7.443 6.639 14.758 Atomic orbital electron populations 1.21817 0.91643 1.04175 1.02972 1.23233 0.96211 0.79066 1.02739 1.86453 1.24365 1.33808 1.83209 1.23346 0.80481 0.92007 0.70997 1.90601 1.60796 1.43477 1.46693 1.22203 0.99501 0.88613 1.00293 1.21259 0.79922 0.99239 0.96810 1.44713 1.04486 1.51830 1.37575 1.17561 0.87786 0.92424 0.91144 1.20106 0.98846 1.08768 1.02956 1.20807 0.93317 0.97221 0.97702 1.20956 0.93938 1.06490 1.01967 1.17761 0.93786 0.90314 0.89515 1.19640 0.91791 1.03655 1.37353 0.91590 1.26687 1.05650 0.93327 0.91822 1.69880 1.40443 1.01403 1.32103 0.85219 0.75896 0.79625 0.79134 1.18736 1.18245 1.18649 1.17565 0.89501 1.09991 0.98421 1.91162 1.84638 1.74508 1.64935 1.23093 0.98518 1.02030 0.91639 1.22885 0.96801 1.01320 0.96064 1.22961 0.88695 1.04750 0.97584 0.87488 0.91593 0.93370 0.91463 0.90025 0.92518 0.89376 0.76157 0.85267 0.86008 0.87556 0.89816 0.86604 0.91597 0.91116 0.87957 0.90628 0.85654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 10.29 71.98 0.74 -2.82 16 2 C 0.06 1.54 6.19 71.98 0.45 1.98 16 3 O -0.36 -10.97 7.26 -51.41 -0.37 -11.35 16 4 C 0.49 13.95 6.72 71.24 0.48 14.43 16 5 O -0.53 -16.39 15.58 21.98 0.34 -16.05 16 6 C -0.10 -2.42 1.04 -52.40 -0.05 -2.48 16 7 C 0.15 4.10 4.35 86.38 0.38 4.48 16 8 N -0.75 -27.35 5.28 -339.34 -1.79 -29.14 16 9 C 0.21 9.60 6.65 38.15 0.25 9.86 16 10 C -0.28 -11.87 9.32 22.57 0.21 -11.66 16 11 C -0.07 -3.21 10.01 22.21 0.22 -2.99 16 12 C -0.21 -11.20 8.69 22.74 0.20 -11.00 16 13 C 0.09 5.06 5.57 -21.27 -0.12 4.94 16 14 C -0.50 -28.11 8.78 23.44 0.21 -27.91 16 15 H 0.07 3.77 7.74 -2.91 -0.02 3.74 16 16 C 0.04 2.13 5.14 85.25 0.44 2.57 16 17 N -0.81 -42.49 10.97 21.83 0.24 -42.26 16 18 Si 0.98 38.94 29.59 68.60 2.03 40.97 16 19 H -0.26 -10.05 7.11 99.48 0.71 -9.34 16 20 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 21 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 22 C -0.13 -6.89 7.31 22.99 0.17 -6.72 16 23 F -0.17 -9.11 16.08 44.97 0.72 -8.39 16 24 C -0.12 -2.20 7.23 31.18 0.23 -1.98 16 25 C -0.13 -2.11 7.76 31.18 0.24 -1.87 16 26 C -0.10 -1.76 7.02 31.12 0.22 -1.54 16 27 H 0.11 1.87 8.14 -2.38 -0.02 1.85 16 28 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.07 1.70 8.13 -2.39 -0.02 1.68 16 31 H 0.08 1.80 8.13 -2.39 -0.02 1.78 16 32 H 0.06 1.55 7.93 -2.39 -0.02 1.53 16 33 H 0.09 2.09 7.79 -2.39 -0.02 2.07 16 34 H 0.40 15.00 5.31 -92.71 -0.49 14.51 16 35 H 0.13 4.45 6.70 -2.91 -0.02 4.43 16 36 H 0.12 4.63 8.06 -2.91 -0.02 4.61 16 37 H 0.11 5.79 6.18 -2.91 -0.02 5.77 16 38 H 0.29 13.56 8.30 -92.71 -0.77 12.79 16 39 H 0.12 1.92 7.99 -2.39 -0.02 1.90 16 40 H 0.07 1.37 8.09 -2.39 -0.02 1.35 16 41 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.08 1.48 7.42 -2.39 -0.02 1.46 16 44 H 0.13 1.51 8.10 -2.39 -0.02 1.50 16 Total: -1.00 -66.37 364.73 5.95 -60.43 By element: Atomic # 1 Polarization: 37.96 SS G_CDS: 0.53 Total: 38.49 kcal Atomic # 6 Polarization: -36.95 SS G_CDS: 4.25 Total: -32.70 kcal Atomic # 7 Polarization: -69.84 SS G_CDS: -1.55 Total: -71.39 kcal Atomic # 8 Polarization: -27.37 SS G_CDS: -0.03 Total: -27.40 kcal Atomic # 9 Polarization: -9.11 SS G_CDS: 0.72 Total: -8.39 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -66.37 5.95 -60.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169555756.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.114 kcal (2) G-P(sol) polarization free energy of solvation -66.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds