Wall clock time and date at job start Tue Mar 31 2020 13:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45199 * 109.46886 * 2 1 4 4 C 1.34236 * 116.99490 * 179.97438 * 3 2 1 5 5 O 1.20820 * 120.00148 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99584 * 179.97438 * 4 3 2 7 7 C 1.53002 * 112.84944 * 50.33460 * 6 4 3 8 8 N 1.46501 * 109.47066 * 309.66411 * 7 6 4 9 9 C 1.38801 * 120.00194 * 180.02562 * 8 7 6 10 10 C 1.38633 * 120.21542 * 359.97438 * 9 8 7 11 11 C 1.38226 * 120.22064 * 179.97438 * 10 9 8 12 12 C 1.38786 * 120.65897 * 359.97438 * 11 10 9 13 13 C 1.37740 * 120.43017 * 0.04988 * 12 11 10 14 14 F 1.35101 * 120.11511 * 179.97438 * 13 12 11 15 15 C 1.40997 * 119.76559 * 359.69706 * 13 12 11 16 16 C 1.40991 * 120.32129 * 180.30536 * 15 13 12 17 17 H 1.08002 * 120.00010 * 217.12309 * 16 15 13 18 18 C 1.39916 * 120.00191 * 37.11537 * 16 15 13 19 19 N 1.30903 * 119.99575 * 19.59906 * 18 16 15 20 20 Si 1.86796 * 120.00027 * 199.59124 * 18 16 15 21 21 H 1.48497 * 109.47363 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46748 * 120.00652 * 20 18 16 23 23 H 1.48504 * 109.47123 * 240.00299 * 20 18 16 24 24 C 1.53777 * 113.61284 * 279.13310 * 6 4 3 25 25 C 1.53953 * 87.02177 * 220.04929 * 24 6 4 26 26 C 1.53778 * 87.10818 * 25.36539 * 25 24 6 27 27 H 1.08994 * 109.47216 * 300.00262 * 1 2 3 28 28 H 1.09000 * 109.46655 * 60.00066 * 1 2 3 29 29 H 1.08994 * 109.47060 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47216 * 239.99738 * 2 1 3 31 31 H 1.09000 * 109.46655 * 119.99934 * 2 1 3 32 32 H 1.08996 * 109.47300 * 69.66710 * 7 6 4 33 33 H 1.09000 * 109.46556 * 189.66595 * 7 6 4 34 34 H 0.96998 * 119.99762 * 359.97438 * 8 7 6 35 35 H 1.08001 * 119.88911 * 359.95557 * 10 9 8 36 36 H 1.08004 * 119.67091 * 179.97438 * 11 10 9 37 37 H 1.08000 * 119.78396 * 180.02562 * 12 11 10 38 38 H 0.97003 * 119.99987 * 179.97438 * 19 18 16 39 39 H 1.08998 * 113.62096 * 334.57122 * 24 6 4 40 40 H 1.09004 * 113.61512 * 105.47721 * 24 6 4 41 41 H 1.09006 * 113.53824 * 270.81511 * 25 24 6 42 42 H 1.08996 * 113.66770 * 139.93007 * 25 24 6 43 43 H 1.09006 * 113.61368 * 220.08647 * 26 25 24 44 44 H 1.08997 * 113.61676 * 89.18987 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 6 3.3157 3.8310 1.0845 8 7 1.8539 3.7616 1.0151 9 6 1.0812 4.4939 1.9058 10 6 1.6880 5.2921 2.8632 11 6 0.9186 6.0218 3.7498 12 6 -0.4671 5.9675 3.6954 13 6 -1.0981 5.1829 2.7554 14 9 -2.4474 5.1344 2.7084 15 6 -0.3309 4.4353 1.8387 16 6 -0.9647 3.6333 0.8675 17 1 -0.5382 2.6799 0.5925 18 6 -2.1461 4.0726 0.2601 19 7 -2.4617 5.3427 0.2849 20 14 -3.2729 2.8465 -0.5863 21 1 -2.6943 1.4834 -0.4746 22 1 -4.6084 2.8717 0.0627 23 1 -3.4121 3.2096 -2.0195 24 6 3.9502 3.5913 -1.3915 25 6 5.3324 4.1520 -1.0104 26 6 5.4578 2.9682 -0.0369 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.6495 3.4899 2.0644 33 1 3.6383 4.8605 0.9288 34 1 1.4261 3.2044 0.3463 35 1 2.7655 5.3437 2.9166 36 1 1.4006 6.6404 4.4924 37 1 -1.0545 6.5438 4.3948 38 1 -3.2806 5.6474 -0.1365 39 1 3.9811 2.8732 -2.2109 40 1 3.1892 4.3595 -1.5292 41 1 5.2871 5.1219 -0.5150 42 1 6.0553 4.1253 -1.8257 43 1 5.9123 3.2341 0.9175 44 1 5.9018 2.0794 -0.4852 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169560778.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:54 Heat of formation + Delta-G solvation = -87.466813 kcal Electronic energy + Delta-G solvation = -28502.443197 eV Core-core repulsion = 24527.814275 eV Total energy + Delta-G solvation = -3974.628922 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.79110 -40.99723 -38.71265 -37.63998 -36.32295 -33.94824 -33.44691 -31.53166 -29.86299 -28.73646 -26.87029 -25.87057 -25.04609 -24.49211 -22.93002 -21.39670 -20.98080 -20.10234 -18.81959 -17.60994 -17.23234 -16.68831 -16.48643 -16.10758 -15.45366 -15.09269 -14.64440 -14.26472 -14.12258 -14.03300 -13.71572 -13.62995 -13.47849 -13.15083 -12.70445 -12.63305 -12.48667 -12.31109 -11.95996 -11.74015 -11.66071 -11.38191 -11.36398 -11.23813 -11.13880 -10.99256 -10.71652 -10.60156 -10.51072 -10.46270 -10.34311 -10.03572 -10.00593 -9.43373 -8.94063 -8.82580 -7.07873 -6.66269 -6.30490 -4.14759 2.27872 2.77687 2.80891 2.97906 3.14870 3.17918 3.20513 4.02567 4.06396 4.38219 4.54171 4.65099 4.74545 4.82221 4.89765 5.10507 5.16529 5.35681 5.41058 5.48867 5.55148 5.62643 5.77756 5.80499 5.83776 5.91813 5.96296 6.04219 6.05482 6.14312 6.17728 6.26087 6.32722 6.47624 6.58139 6.64593 7.05357 7.29887 7.41605 7.44682 7.69330 7.86984 7.90645 8.18945 8.42147 8.62276 8.86672 9.02558 9.10131 10.39263 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011383 B = 0.005755 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.200399 B = 4864.343515 C = 6337.844655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.066 3.934 3 O -0.340 6.340 4 C 0.482 3.518 5 O -0.517 6.517 6 C -0.093 4.093 7 C 0.161 3.839 8 N -0.738 5.738 9 C 0.153 3.847 10 C -0.197 4.197 11 C -0.162 4.162 12 C -0.182 4.182 13 C 0.060 3.940 14 F -0.144 7.144 15 C 0.042 3.958 16 C -0.474 4.474 17 H 0.083 0.917 18 C 0.082 3.918 19 N -0.789 5.789 20 Si 0.894 3.106 21 H -0.259 1.259 22 H -0.275 1.275 23 H -0.279 1.279 24 C -0.121 4.121 25 C -0.138 4.138 26 C -0.111 4.111 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.408 0.592 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.277 0.723 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.074 0.926 43 H 0.079 0.921 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.326 -4.869 -3.117 11.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.007 4.007 3 O -0.255 6.255 4 C 0.325 3.675 5 O -0.405 6.405 6 C -0.094 4.094 7 C 0.035 3.965 8 N -0.377 5.377 9 C 0.053 3.947 10 C -0.221 4.221 11 C -0.182 4.182 12 C -0.203 4.203 13 C 0.038 3.962 14 F -0.123 7.123 15 C 0.036 3.964 16 C -0.504 4.504 17 H 0.101 0.899 18 C -0.136 4.136 19 N -0.414 5.414 20 Si 0.719 3.281 21 H -0.182 1.182 22 H -0.200 1.200 23 H -0.205 1.205 24 C -0.158 4.158 25 C -0.176 4.176 26 C -0.148 4.148 27 H 0.098 0.902 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.249 0.751 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.088 0.912 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.446 -5.000 -3.182 12.011 hybrid contribution -1.063 -0.781 -0.612 1.454 sum 9.384 -5.781 -3.794 11.656 Atomic orbital electron populations 1.21910 0.92088 1.02533 1.04985 1.23028 0.95866 0.80050 1.01795 1.86520 1.23835 1.32175 1.83005 1.23439 0.80822 0.91798 0.71436 1.90605 1.60730 1.42892 1.46310 1.22315 0.97399 0.89788 0.99936 1.20793 0.83422 0.97307 0.94996 1.44206 1.01797 1.52906 1.38831 1.17635 0.90067 0.95104 0.91937 1.20062 0.97330 1.04464 1.00239 1.19915 0.92448 1.04031 1.01770 1.20417 0.94854 1.03589 1.01446 1.17459 0.76503 1.04531 0.97689 1.91312 1.29834 1.95311 1.95802 1.17066 0.88856 0.96201 0.94238 1.19026 1.07051 1.04488 1.19820 0.89947 1.25642 0.97603 0.94964 0.95416 1.69806 1.22529 1.14773 1.34280 0.86495 0.80731 0.82094 0.78761 1.18216 1.20019 1.20484 1.22988 0.98832 1.00307 0.93677 1.22880 0.96903 0.98318 0.99460 1.22924 0.91323 0.99624 1.00978 0.90164 0.91237 0.90738 0.91770 0.91530 0.92791 0.91632 0.75075 0.88870 0.88706 0.88655 0.91216 0.89715 0.89243 0.89249 0.90691 0.90206 0.88526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 10.02 37.16 0.37 -1.84 16 2 C 0.07 0.94 6.19 37.16 0.23 1.17 16 3 O -0.34 -5.60 7.26 -39.27 -0.29 -5.89 16 4 C 0.48 7.61 7.00 36.01 0.25 7.86 16 5 O -0.52 -8.80 15.66 -18.74 -0.29 -9.10 16 6 C -0.09 -1.25 1.03 -154.85 -0.16 -1.41 16 7 C 0.16 2.47 4.23 -4.04 -0.02 2.45 16 8 N -0.74 -14.40 5.17 -58.23 -0.30 -14.70 16 9 C 0.15 3.51 6.68 -83.32 -0.56 2.95 16 10 C -0.20 -4.20 9.29 -39.44 -0.37 -4.57 16 11 C -0.16 -3.49 10.03 -39.38 -0.40 -3.89 16 12 C -0.18 -4.32 9.99 -39.56 -0.40 -4.72 16 13 C 0.06 1.59 6.67 -38.72 -0.26 1.34 16 14 F -0.14 -3.99 14.31 2.25 0.03 -3.96 16 15 C 0.04 1.09 5.41 -106.57 -0.58 0.51 16 16 C -0.47 -12.13 8.12 -37.91 -0.31 -12.44 16 17 H 0.08 2.00 6.15 -52.49 -0.32 1.67 16 18 C 0.08 2.09 4.52 -17.32 -0.08 2.01 16 19 N -0.79 -21.27 11.15 55.55 0.62 -20.65 16 20 Si 0.89 19.04 29.60 -169.99 -5.03 14.01 16 21 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 22 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 23 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 24 C -0.12 -1.43 7.21 -25.83 -0.19 -1.61 16 25 C -0.14 -1.32 7.74 -25.83 -0.20 -1.52 16 26 C -0.11 -1.20 6.99 -25.92 -0.18 -1.38 16 27 H 0.08 1.29 7.44 -51.93 -0.39 0.90 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 31 H 0.07 0.92 8.13 -51.93 -0.42 0.49 16 32 H 0.05 0.83 7.94 -51.93 -0.41 0.41 16 33 H 0.07 0.94 7.13 -51.93 -0.37 0.57 16 34 H 0.41 8.21 4.27 -40.82 -0.17 8.03 16 35 H 0.09 1.72 6.71 -52.49 -0.35 1.37 16 36 H 0.09 1.77 8.06 -52.48 -0.42 1.34 16 37 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 38 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 39 H 0.08 0.95 8.09 -51.93 -0.42 0.53 16 40 H 0.09 1.16 8.10 -51.93 -0.42 0.73 16 41 H 0.09 0.81 7.64 -51.93 -0.40 0.42 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 44 H 0.10 1.09 7.45 -51.93 -0.39 0.70 16 LS Contribution 359.71 15.07 5.42 5.42 Total: -1.00 -29.52 359.71 -8.82 -38.34 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -6.16 Total: 11.63 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: -2.82 Total: -15.10 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: 0.32 Total: -35.35 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: -0.58 Total: -14.98 kcal Atomic # 9 Polarization: -3.99 SS G_CDS: 0.03 Total: -3.96 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.03 Total: 14.01 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.52 -8.82 -38.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169560778.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.127 kcal (2) G-P(sol) polarization free energy of solvation -29.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds