Wall clock time and date at job start Tue Mar 31 2020 13:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45199 * 109.46886 * 2 1 4 4 C 1.34236 * 116.99490 * 179.97438 * 3 2 1 5 5 O 1.20820 * 120.00148 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99584 * 179.97438 * 4 3 2 7 7 C 1.53002 * 112.84944 * 50.33460 * 6 4 3 8 8 N 1.46501 * 109.47066 * 309.66411 * 7 6 4 9 9 C 1.38801 * 120.00194 * 180.02562 * 8 7 6 10 10 C 1.38633 * 120.21542 * 359.97438 * 9 8 7 11 11 C 1.38226 * 120.22064 * 179.97438 * 10 9 8 12 12 C 1.38786 * 120.65897 * 359.97438 * 11 10 9 13 13 C 1.37740 * 120.43017 * 0.04988 * 12 11 10 14 14 F 1.35101 * 120.11511 * 179.97438 * 13 12 11 15 15 C 1.40997 * 119.76559 * 359.69706 * 13 12 11 16 16 C 1.40991 * 120.32129 * 180.30536 * 15 13 12 17 17 H 1.08002 * 120.00010 * 217.12309 * 16 15 13 18 18 C 1.39916 * 120.00191 * 37.11537 * 16 15 13 19 19 N 1.30903 * 119.99575 * 19.59906 * 18 16 15 20 20 Si 1.86796 * 120.00027 * 199.59124 * 18 16 15 21 21 H 1.48497 * 109.47363 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46748 * 120.00652 * 20 18 16 23 23 H 1.48504 * 109.47123 * 240.00299 * 20 18 16 24 24 C 1.53777 * 113.61284 * 279.13310 * 6 4 3 25 25 C 1.53953 * 87.02177 * 220.04929 * 24 6 4 26 26 C 1.53778 * 87.10818 * 25.36539 * 25 24 6 27 27 H 1.08994 * 109.47216 * 300.00262 * 1 2 3 28 28 H 1.09000 * 109.46655 * 60.00066 * 1 2 3 29 29 H 1.08994 * 109.47060 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47216 * 239.99738 * 2 1 3 31 31 H 1.09000 * 109.46655 * 119.99934 * 2 1 3 32 32 H 1.08996 * 109.47300 * 69.66710 * 7 6 4 33 33 H 1.09000 * 109.46556 * 189.66595 * 7 6 4 34 34 H 0.96998 * 119.99762 * 359.97438 * 8 7 6 35 35 H 1.08001 * 119.88911 * 359.95557 * 10 9 8 36 36 H 1.08004 * 119.67091 * 179.97438 * 11 10 9 37 37 H 1.08000 * 119.78396 * 180.02562 * 12 11 10 38 38 H 0.97003 * 119.99987 * 179.97438 * 19 18 16 39 39 H 1.08998 * 113.62096 * 334.57122 * 24 6 4 40 40 H 1.09004 * 113.61512 * 105.47721 * 24 6 4 41 41 H 1.09006 * 113.53824 * 270.81511 * 25 24 6 42 42 H 1.08996 * 113.66770 * 139.93007 * 25 24 6 43 43 H 1.09006 * 113.61368 * 220.08647 * 26 25 24 44 44 H 1.08997 * 113.61676 * 89.18987 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0807 0.5866 0.0015 6 6 3.9208 2.9374 0.0000 7 6 3.3157 3.8310 1.0845 8 7 1.8539 3.7616 1.0151 9 6 1.0812 4.4939 1.9058 10 6 1.6880 5.2921 2.8632 11 6 0.9186 6.0218 3.7498 12 6 -0.4671 5.9675 3.6954 13 6 -1.0981 5.1829 2.7554 14 9 -2.4474 5.1344 2.7084 15 6 -0.3309 4.4353 1.8387 16 6 -0.9647 3.6333 0.8675 17 1 -0.5382 2.6799 0.5925 18 6 -2.1461 4.0726 0.2601 19 7 -2.4617 5.3427 0.2849 20 14 -3.2729 2.8465 -0.5863 21 1 -2.6943 1.4834 -0.4746 22 1 -4.6084 2.8717 0.0627 23 1 -3.4121 3.2096 -2.0195 24 6 3.9502 3.5913 -1.3915 25 6 5.3324 4.1520 -1.0104 26 6 5.4578 2.9682 -0.0369 27 1 -0.3633 0.5138 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.6495 3.4899 2.0644 33 1 3.6383 4.8605 0.9288 34 1 1.4261 3.2044 0.3463 35 1 2.7655 5.3437 2.9166 36 1 1.4006 6.6404 4.4924 37 1 -1.0545 6.5438 4.3948 38 1 -3.2806 5.6474 -0.1365 39 1 3.9811 2.8732 -2.2109 40 1 3.1892 4.3595 -1.5292 41 1 5.2871 5.1219 -0.5150 42 1 6.0553 4.1253 -1.8257 43 1 5.9123 3.2341 0.9175 44 1 5.9018 2.0794 -0.4852 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169560778.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:54 Heat of formation + Delta-G solvation = -101.757125 kcal Electronic energy + Delta-G solvation = -28503.062872 eV Core-core repulsion = 24527.814275 eV Total energy + Delta-G solvation = -3975.248597 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.81933 -42.14463 -39.89554 -39.24230 -37.58447 -35.46737 -35.30903 -32.70275 -31.60362 -30.26010 -28.31365 -26.84179 -26.74399 -25.82843 -24.04278 -22.78759 -22.47033 -21.82534 -19.89616 -19.18923 -18.78609 -18.04396 -17.75268 -17.53691 -16.97974 -16.65586 -16.01012 -15.87381 -15.61779 -15.54927 -15.38216 -15.15011 -14.89925 -14.52584 -14.38147 -13.74663 -13.58672 -13.41871 -13.37298 -13.12169 -13.04581 -13.01407 -12.92412 -12.70243 -12.46412 -12.42015 -12.29228 -12.13231 -11.76062 -11.54074 -11.50104 -11.38648 -11.26119 -11.17080 -10.79928 -10.47947 -8.96972 -8.53658 -8.01330 -6.06232 1.00606 1.06999 1.15188 1.38621 1.47918 1.51486 1.66410 2.28191 2.75807 2.90563 3.40960 3.51494 3.65159 3.67094 3.72683 3.83929 3.97947 4.03660 4.29111 4.34524 4.45203 4.47941 4.59447 4.67187 4.72095 4.75474 4.78896 4.86141 4.86888 4.88177 5.01939 5.09007 5.10660 5.13894 5.27564 5.42057 5.43324 5.47689 5.63987 5.72483 5.87259 6.09735 6.35047 6.57908 6.66988 6.84442 7.02984 7.23574 7.38036 8.53217 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011383 B = 0.005755 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.200399 B = 4864.343515 C = 6337.844655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.063 3.937 3 O -0.358 6.358 4 C 0.478 3.522 5 O -0.533 6.533 6 C -0.100 4.100 7 C 0.158 3.842 8 N -0.738 5.738 9 C 0.157 3.843 10 C -0.203 4.203 11 C -0.145 4.145 12 C -0.203 4.203 13 C 0.023 3.977 14 F -0.162 7.162 15 C 0.003 3.997 16 C -0.491 4.491 17 H 0.086 0.914 18 C 0.039 3.961 19 N -0.832 5.832 20 Si 0.952 3.048 21 H -0.239 1.239 22 H -0.282 1.282 23 H -0.272 1.272 24 C -0.123 4.123 25 C -0.122 4.122 26 C -0.102 4.102 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.104 0.896 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.084 0.916 34 H 0.403 0.597 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.107 0.893 38 H 0.277 0.723 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.902 -5.188 -3.311 14.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.274 6.274 4 C 0.322 3.678 5 O -0.423 6.423 6 C -0.101 4.101 7 C 0.034 3.966 8 N -0.374 5.374 9 C 0.054 3.946 10 C -0.227 4.227 11 C -0.164 4.164 12 C -0.224 4.224 13 C 0.002 3.998 14 F -0.141 7.141 15 C -0.002 4.002 16 C -0.522 4.522 17 H 0.104 0.896 18 C -0.175 4.175 19 N -0.459 5.459 20 Si 0.774 3.226 21 H -0.162 1.162 22 H -0.208 1.208 23 H -0.198 1.198 24 C -0.161 4.161 25 C -0.160 4.160 26 C -0.140 4.140 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.123 0.877 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.244 0.756 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.125 0.875 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.117 0.883 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 13.064 -5.338 -3.384 14.513 hybrid contribution -1.718 -0.677 -0.472 1.906 sum 11.347 -6.015 -3.856 13.409 Atomic orbital electron populations 1.21900 0.92044 1.03962 1.03163 1.23168 0.95898 0.79429 1.02580 1.86525 1.24503 1.33401 1.83003 1.23945 0.80438 0.92623 0.70789 1.90587 1.60885 1.43626 1.47180 1.22494 0.99106 0.88163 1.00349 1.21009 0.80794 0.98774 0.96066 1.44393 1.03553 1.51762 1.37701 1.17879 0.89505 0.94851 0.92407 1.20455 0.99198 1.03617 0.99384 1.20405 0.91567 1.02871 1.01572 1.20669 0.96203 1.04010 1.01529 1.17971 0.76085 1.06403 0.99376 1.91246 1.31210 1.95601 1.96063 1.17444 0.90570 0.97351 0.94866 1.19218 1.07928 1.04764 1.20252 0.89597 1.26407 0.98787 0.96316 0.95982 1.69889 1.23164 1.16542 1.36337 0.85602 0.78295 0.80887 0.77768 1.16178 1.20792 1.19771 1.23040 1.00133 1.00037 0.92860 1.22865 0.95441 0.98047 0.99601 1.22936 0.88796 1.00127 1.02154 0.92722 0.92108 0.87741 0.90316 0.91328 0.92207 0.89860 0.75627 0.85301 0.84952 0.87492 0.91302 0.89345 0.90665 0.88268 0.88645 0.88701 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.22 10.02 71.98 0.72 -3.50 16 2 C 0.06 1.73 6.19 71.98 0.45 2.18 16 3 O -0.36 -11.70 7.26 -51.47 -0.37 -12.07 16 4 C 0.48 14.55 7.00 71.24 0.50 15.05 16 5 O -0.53 -17.48 15.66 21.98 0.34 -17.14 16 6 C -0.10 -2.49 1.03 -52.40 -0.05 -2.54 16 7 C 0.16 4.47 4.23 86.38 0.37 4.83 16 8 N -0.74 -28.12 5.17 -338.13 -1.75 -29.87 16 9 C 0.16 7.07 6.68 38.94 0.26 7.33 16 10 C -0.20 -8.14 9.29 22.36 0.21 -7.93 16 11 C -0.14 -5.90 10.03 22.40 0.22 -5.67 16 12 C -0.20 -9.61 9.99 22.28 0.22 -9.39 16 13 C 0.02 1.28 6.67 22.83 0.15 1.43 16 14 F -0.16 -9.42 14.31 44.97 0.64 -8.78 16 15 C 0.00 0.17 5.41 -21.13 -0.11 0.05 16 16 C -0.49 -25.92 8.12 23.35 0.19 -25.73 16 17 H 0.09 4.30 6.15 -2.91 -0.02 4.28 16 18 C 0.04 2.03 4.52 85.24 0.38 2.41 16 19 N -0.83 -46.74 11.15 21.83 0.24 -46.49 16 20 Si 0.95 40.04 29.60 68.60 2.03 42.07 16 21 H -0.24 -9.14 7.11 99.48 0.71 -8.43 16 22 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 23 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 24 C -0.12 -2.67 7.21 31.18 0.22 -2.45 16 25 C -0.12 -1.91 7.74 31.18 0.24 -1.66 16 26 C -0.10 -1.90 6.99 31.12 0.22 -1.68 16 27 H 0.05 1.77 7.44 -2.39 -0.02 1.76 16 28 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.08 1.93 8.13 -2.39 -0.02 1.92 16 31 H 0.07 1.85 8.13 -2.39 -0.02 1.83 16 32 H 0.06 1.65 7.94 -2.39 -0.02 1.63 16 33 H 0.08 2.10 7.13 -2.39 -0.02 2.08 16 34 H 0.40 16.26 4.27 -92.71 -0.40 15.86 16 35 H 0.13 4.20 6.71 -2.91 -0.02 4.18 16 36 H 0.13 4.37 8.06 -2.91 -0.02 4.35 16 37 H 0.11 4.65 8.06 -2.91 -0.02 4.62 16 38 H 0.28 14.54 8.30 -92.71 -0.77 13.77 16 39 H 0.09 1.84 8.09 -2.39 -0.02 1.82 16 40 H 0.07 1.85 8.10 -2.38 -0.02 1.83 16 41 H 0.10 1.39 7.64 -2.38 -0.02 1.37 16 42 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.09 1.49 8.10 -2.38 -0.02 1.47 16 44 H 0.09 1.84 7.45 -2.39 -0.02 1.83 16 Total: -1.00 -66.04 359.71 5.95 -60.09 By element: Atomic # 1 Polarization: 38.84 SS G_CDS: 0.63 Total: 39.47 kcal Atomic # 6 Polarization: -31.45 SS G_CDS: 4.19 Total: -27.27 kcal Atomic # 7 Polarization: -74.86 SS G_CDS: -1.51 Total: -76.37 kcal Atomic # 8 Polarization: -29.18 SS G_CDS: -0.03 Total: -29.21 kcal Atomic # 9 Polarization: -9.42 SS G_CDS: 0.64 Total: -8.78 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 2.03 Total: 42.07 kcal Total: -66.04 5.95 -60.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169560778.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.671 kcal (2) G-P(sol) polarization free energy of solvation -66.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds