Wall clock time and date at job start Tue Mar 31 2020 13:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47007 * 111.00344 * 2 1 4 4 C 1.53103 * 109.25940 * 177.60681 * 3 2 1 5 5 O 1.43016 * 109.25226 * 56.85437 * 4 3 2 6 6 C 1.43020 * 113.77406 * 301.34905 * 5 4 3 7 7 C 1.47019 * 110.99606 * 236.36737 * 2 1 3 8 8 H 1.08998 * 109.50681 * 62.41568 * 7 2 1 9 9 C 1.52997 * 109.50543 * 302.32797 * 7 2 1 10 10 N 1.46496 * 109.47411 * 305.63234 * 9 7 2 11 11 C 1.37659 * 120.00083 * 184.76632 * 10 9 7 12 12 C 1.40184 * 119.81342 * 0.02562 * 11 10 9 13 13 C 1.35793 * 120.19070 * 179.97438 * 12 11 10 14 14 C 1.41758 * 119.80427 * 359.77000 * 13 12 11 15 15 C 1.39515 * 120.18343 * 180.25463 * 14 13 12 16 16 H 1.07995 * 119.99975 * 218.60785 * 15 14 13 17 17 C 1.46600 * 120.00057 * 38.60906 * 15 14 13 18 18 N 1.29490 * 120.00031 * 8.09160 * 17 15 14 19 19 Si 1.86797 * 119.99842 * 188.08389 * 17 15 14 20 20 H 1.48498 * 109.47158 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46889 * 120.00229 * 19 17 15 22 22 H 1.48497 * 109.47193 * 240.00254 * 19 17 15 23 23 C 1.41718 * 119.63163 * 0.50044 * 14 13 12 24 24 N 1.48008 * 120.09901 * 179.74477 * 23 14 13 25 25 O 1.31695 * 120.00242 * 176.26046 * 24 23 14 26 26 O 1.31702 * 120.00039 * 355.98789 * 24 23 14 27 27 C 1.35834 * 119.80084 * 359.48068 * 23 14 13 28 28 H 1.08995 * 109.47499 * 180.72811 * 1 2 3 29 29 H 1.09004 * 109.46394 * 300.72352 * 1 2 3 30 30 H 1.09000 * 109.46997 * 60.72038 * 1 2 3 31 31 H 1.09002 * 109.50961 * 297.54570 * 3 2 1 32 32 H 1.09001 * 109.50866 * 57.67810 * 3 2 1 33 33 H 1.09004 * 109.50371 * 176.78312 * 4 3 2 34 34 H 1.08997 * 109.50901 * 296.91783 * 4 3 2 35 35 H 1.09001 * 109.47282 * 298.68989 * 6 5 4 36 36 H 1.09007 * 109.54573 * 178.56384 * 6 5 4 37 37 H 1.09000 * 109.47129 * 185.62968 * 9 7 2 38 38 H 1.08999 * 109.47267 * 65.62967 * 9 7 2 39 39 H 0.97005 * 119.99917 * 4.75705 * 10 9 7 40 40 H 1.07993 * 119.90053 * 359.97438 * 12 11 10 41 41 H 1.08002 * 120.09661 * 180.02562 * 13 12 11 42 42 H 0.96996 * 119.99847 * 180.02562 * 18 17 15 43 43 H 1.08000 * 119.89934 * 180.25332 * 27 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3724 0.0000 4 6 3.5251 1.3263 0.0604 5 8 4.0175 0.5573 -1.0404 6 6 3.5249 -0.7850 -1.0721 7 6 1.9958 -0.7602 -1.1428 8 1 1.6820 -0.2846 -2.0720 9 6 1.4588 -2.1921 -1.0950 10 7 1.7671 -2.7860 0.2081 11 6 1.4674 -4.1076 0.4504 12 6 0.8677 -4.8816 -0.5528 13 6 0.5693 -6.1861 -0.3223 14 6 0.8704 -6.7661 0.9357 15 6 0.5721 -8.1070 1.1793 16 1 0.1995 -8.4102 2.1465 17 6 0.7644 -9.1044 0.1223 18 7 1.3555 -8.7729 -0.9811 19 14 0.1568 -10.8538 0.3673 20 1 -0.4796 -10.9742 1.7035 21 1 -0.8369 -11.1846 -0.6855 22 1 1.3036 -11.7931 0.2782 23 6 1.4714 -5.9748 1.9462 24 7 1.7850 -6.5683 3.2653 25 8 2.4100 -5.8529 4.1775 26 8 1.4344 -7.8101 3.5289 27 6 1.7636 -4.6716 1.6988 28 1 -0.3634 -1.0275 0.0131 29 1 -0.3632 0.5251 0.8835 30 1 -0.3633 0.5026 -0.8964 31 1 1.6828 1.8825 -0.9110 32 1 1.6135 1.9091 0.8682 33 1 3.9223 2.3397 0.0030 34 1 3.8386 0.8641 0.9964 35 1 3.8392 -1.3088 -0.1693 36 1 3.9215 -1.2984 -1.9481 37 1 1.9267 -2.7821 -1.8831 38 1 0.3789 -2.1803 -1.2425 39 1 2.1825 -2.2481 0.9003 40 1 0.6425 -4.4390 -1.5118 41 1 0.1077 -6.7811 -1.0964 42 1 1.4824 -9.4327 -1.6805 43 1 2.2254 -4.0682 2.4664 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169658456.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:46 Heat of formation + Delta-G solvation = 7.900848 kcal Electronic energy + Delta-G solvation = -27284.787172 eV Core-core repulsion = 23334.213664 eV Total energy + Delta-G solvation = -3950.573509 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.12530 -38.65373 -36.82494 -36.09040 -35.10738 -33.81566 -32.35669 -31.73815 -30.28322 -29.44849 -28.78534 -26.74465 -25.10423 -24.35760 -23.98711 -22.81651 -21.47561 -20.60726 -19.52908 -18.17879 -17.08577 -16.69230 -16.63509 -16.17308 -15.72684 -15.54601 -15.43121 -15.15574 -14.70483 -14.36796 -14.05109 -14.00159 -13.90003 -13.59553 -13.13837 -12.97666 -12.63517 -12.49713 -12.26341 -12.04941 -11.86901 -11.65546 -11.55629 -11.30470 -11.22371 -11.06050 -10.74345 -10.48790 -10.31782 -9.96903 -9.81868 -9.27788 -9.19985 -8.90543 -8.71334 -8.64562 -8.25667 -7.59960 -6.85054 -4.71848 1.07755 2.45585 2.79956 2.89182 2.90649 2.93472 3.29247 3.47733 3.54657 3.64088 4.01884 4.15115 4.55240 4.62371 4.68040 4.91384 4.96486 5.00767 5.04930 5.27333 5.32753 5.36568 5.51514 5.55729 5.60446 5.68334 5.78465 5.82021 5.83882 5.87472 6.23736 6.35964 6.47428 6.67022 6.70004 6.80332 6.85009 6.91578 7.10336 7.33672 7.41682 7.60985 7.94827 8.03849 8.16630 8.30273 8.50961 8.99292 9.30764 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018924 B = 0.003167 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.269586 B = 8838.279140 C = 9583.302988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.532 5.532 3 C 0.018 3.982 4 C 0.061 3.939 5 O -0.386 6.386 6 C 0.068 3.932 7 C 0.038 3.962 8 H 0.059 0.941 9 C 0.142 3.858 10 N -0.738 5.738 11 C 0.128 3.872 12 C -0.140 4.140 13 C -0.084 4.084 14 C 0.076 3.924 15 C -0.333 4.333 16 H 0.131 0.869 17 C 0.057 3.943 18 N -0.722 5.722 19 Si 0.935 3.065 20 H -0.243 1.243 21 H -0.265 1.265 22 H -0.263 1.263 23 C -0.056 4.056 24 N 0.037 4.963 25 O -0.372 6.372 26 O -0.294 6.294 27 C -0.135 4.135 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.024 0.976 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.062 0.938 38 H 0.053 0.947 39 H 0.399 0.601 40 H 0.107 0.893 41 H 0.126 0.874 42 H 0.302 0.698 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.161 13.522 -9.344 16.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.258 5.258 3 C -0.110 4.110 4 C -0.016 4.016 5 O -0.305 6.305 6 C -0.009 4.009 7 C -0.071 4.071 8 H 0.077 0.923 9 C 0.016 3.984 10 N -0.374 5.374 11 C 0.025 3.975 12 C -0.161 4.161 13 C -0.104 4.104 14 C 0.071 3.929 15 C -0.362 4.362 16 H 0.148 0.852 17 C -0.174 4.174 18 N -0.344 5.344 19 Si 0.756 3.244 20 H -0.166 1.166 21 H -0.189 1.189 22 H -0.188 1.188 23 C -0.160 4.160 24 N 0.448 4.552 25 O -0.510 6.510 26 O -0.449 6.449 27 C -0.160 4.160 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.114 0.886 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.118 0.882 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.235 0.765 40 H 0.125 0.875 41 H 0.143 0.857 42 H 0.115 0.885 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.812 13.527 -9.522 16.641 hybrid contribution -0.379 -0.212 -0.046 0.437 sum -2.191 13.315 -9.568 16.542 Atomic orbital electron populations 1.22448 0.86486 1.03251 1.00373 1.62125 1.08645 1.12990 1.42045 1.22806 0.96555 0.89974 1.01635 1.22678 0.92151 0.96415 0.90327 1.87980 1.69960 1.24139 1.48406 1.22738 0.91246 0.83534 1.03372 1.22601 0.96690 0.94917 0.92845 0.92309 1.21097 0.99149 0.90569 0.87563 1.43517 1.71029 1.08446 1.14436 1.17082 1.02521 0.84762 0.93107 1.20418 1.03175 0.95100 0.97389 1.20974 0.99866 0.93172 0.96358 1.17262 0.91794 0.93493 0.90365 1.22227 1.23930 0.90951 0.99105 0.85168 1.27996 0.92324 1.04044 0.92993 1.69063 1.21910 1.38925 1.04526 0.85762 0.79786 0.77687 0.81183 1.16579 1.18949 1.18798 1.19425 1.17193 0.94893 0.84501 1.49573 1.01044 1.01467 1.03087 1.96045 1.51112 1.61175 1.42635 1.95993 1.63541 0.98622 1.86735 1.19291 1.06569 0.93985 0.96183 0.90065 0.91261 0.95767 0.94113 0.89561 0.88566 0.92031 0.91518 0.88195 0.91990 0.92861 0.76523 0.87490 0.85665 0.88524 0.86609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.24 60.07 0.56 0.77 16 2 N -0.53 -5.49 4.14 -234.57 -0.97 -6.47 16 3 C 0.02 0.16 5.66 -3.71 -0.02 0.14 16 4 C 0.06 0.56 7.01 37.21 0.26 0.82 16 5 O -0.39 -4.44 10.82 -35.23 -0.38 -4.82 16 6 C 0.07 0.74 6.21 37.21 0.23 0.98 16 7 C 0.04 0.40 2.25 -67.60 -0.15 0.25 16 8 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 9 C 0.14 1.68 3.91 -4.05 -0.02 1.66 16 10 N -0.74 -11.03 5.15 -58.49 -0.30 -11.33 16 11 C 0.13 2.43 6.67 -83.80 -0.56 1.87 16 12 C -0.14 -2.62 9.19 -39.73 -0.37 -2.98 16 13 C -0.08 -1.78 8.62 -39.11 -0.34 -2.12 16 14 C 0.08 1.88 5.47 -106.75 -0.58 1.30 16 15 C -0.33 -8.14 7.85 -35.73 -0.28 -8.42 16 16 H 0.13 3.35 5.78 -52.49 -0.30 3.05 16 17 C 0.06 1.22 5.41 -15.17 -0.08 1.14 16 18 N -0.72 -15.20 11.55 55.99 0.65 -14.56 16 19 Si 0.93 16.24 29.65 -169.99 -5.04 11.20 16 20 H -0.24 -4.39 7.11 56.52 0.40 -3.99 16 21 H -0.26 -4.28 7.11 56.52 0.40 -3.88 16 22 H -0.26 -4.56 7.11 56.52 0.40 -4.16 16 23 C -0.06 -1.46 6.90 -79.49 -0.55 -2.01 16 24 N 0.04 1.09 4.98 34.19 0.17 1.26 16 25 O -0.37 -11.18 19.13 -31.57 -0.60 -11.78 16 26 O -0.29 -8.70 16.22 -31.57 -0.51 -9.22 16 27 C -0.13 -3.08 9.35 -39.73 -0.37 -3.45 16 28 H 0.08 0.89 6.23 -51.93 -0.32 0.56 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.80 7.26 -51.93 -0.38 0.43 16 36 H 0.10 0.99 8.14 -51.92 -0.42 0.57 16 37 H 0.06 0.72 7.65 -51.93 -0.40 0.32 16 38 H 0.05 0.62 6.59 -51.93 -0.34 0.28 16 39 H 0.40 5.98 7.40 -40.82 -0.30 5.68 16 40 H 0.11 1.68 6.65 -52.49 -0.35 1.33 16 41 H 0.13 2.56 6.95 -52.49 -0.36 2.20 16 42 H 0.30 5.50 8.27 -40.82 -0.34 5.16 16 43 H 0.12 2.65 7.54 -52.49 -0.40 2.26 16 LS Contribution 352.17 15.07 5.31 5.31 Total: -1.00 -30.30 352.17 -9.63 -39.93 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -5.67 Total: 10.55 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -2.27 Total: -10.06 kcal Atomic # 7 Polarization: -30.64 SS G_CDS: -0.46 Total: -31.09 kcal Atomic # 8 Polarization: -24.33 SS G_CDS: -1.50 Total: -25.82 kcal Atomic # 14 Polarization: 16.24 SS G_CDS: -5.04 Total: 11.20 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.30 -9.63 -39.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169658456.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.828 kcal (2) G-P(sol) polarization free energy of solvation -30.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.927 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds