Wall clock time and date at job start Tue Mar 31 2020 13:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47007 * 111.00344 * 2 1 4 4 C 1.53103 * 109.25940 * 177.60681 * 3 2 1 5 5 O 1.43016 * 109.25226 * 56.85437 * 4 3 2 6 6 C 1.43020 * 113.77406 * 301.34905 * 5 4 3 7 7 C 1.47019 * 110.99606 * 236.36737 * 2 1 3 8 8 H 1.08998 * 109.50681 * 62.41568 * 7 2 1 9 9 C 1.52997 * 109.50543 * 302.32797 * 7 2 1 10 10 N 1.46496 * 109.47411 * 305.63234 * 9 7 2 11 11 C 1.37659 * 120.00083 * 184.76632 * 10 9 7 12 12 C 1.40184 * 119.81342 * 0.02562 * 11 10 9 13 13 C 1.35793 * 120.19070 * 179.97438 * 12 11 10 14 14 C 1.41758 * 119.80427 * 359.77000 * 13 12 11 15 15 C 1.39515 * 120.18343 * 180.25463 * 14 13 12 16 16 H 1.07995 * 119.99975 * 218.60785 * 15 14 13 17 17 C 1.46600 * 120.00057 * 38.60906 * 15 14 13 18 18 N 1.29490 * 120.00031 * 8.09160 * 17 15 14 19 19 Si 1.86797 * 119.99842 * 188.08389 * 17 15 14 20 20 H 1.48498 * 109.47158 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46889 * 120.00229 * 19 17 15 22 22 H 1.48497 * 109.47193 * 240.00254 * 19 17 15 23 23 C 1.41718 * 119.63163 * 0.50044 * 14 13 12 24 24 N 1.48008 * 120.09901 * 179.74477 * 23 14 13 25 25 O 1.31695 * 120.00242 * 176.26046 * 24 23 14 26 26 O 1.31702 * 120.00039 * 355.98789 * 24 23 14 27 27 C 1.35834 * 119.80084 * 359.48068 * 23 14 13 28 28 H 1.08995 * 109.47499 * 180.72811 * 1 2 3 29 29 H 1.09004 * 109.46394 * 300.72352 * 1 2 3 30 30 H 1.09000 * 109.46997 * 60.72038 * 1 2 3 31 31 H 1.09002 * 109.50961 * 297.54570 * 3 2 1 32 32 H 1.09001 * 109.50866 * 57.67810 * 3 2 1 33 33 H 1.09004 * 109.50371 * 176.78312 * 4 3 2 34 34 H 1.08997 * 109.50901 * 296.91783 * 4 3 2 35 35 H 1.09001 * 109.47282 * 298.68989 * 6 5 4 36 36 H 1.09007 * 109.54573 * 178.56384 * 6 5 4 37 37 H 1.09000 * 109.47129 * 185.62968 * 9 7 2 38 38 H 1.08999 * 109.47267 * 65.62967 * 9 7 2 39 39 H 0.97005 * 119.99917 * 4.75705 * 10 9 7 40 40 H 1.07993 * 119.90053 * 359.97438 * 12 11 10 41 41 H 1.08002 * 120.09661 * 180.02562 * 13 12 11 42 42 H 0.96996 * 119.99847 * 180.02562 * 18 17 15 43 43 H 1.08000 * 119.89934 * 180.25332 * 27 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3724 0.0000 4 6 3.5251 1.3263 0.0604 5 8 4.0175 0.5573 -1.0404 6 6 3.5249 -0.7850 -1.0721 7 6 1.9958 -0.7602 -1.1428 8 1 1.6820 -0.2846 -2.0720 9 6 1.4588 -2.1921 -1.0950 10 7 1.7671 -2.7860 0.2081 11 6 1.4674 -4.1076 0.4504 12 6 0.8677 -4.8816 -0.5528 13 6 0.5693 -6.1861 -0.3223 14 6 0.8704 -6.7661 0.9357 15 6 0.5721 -8.1070 1.1793 16 1 0.1995 -8.4102 2.1465 17 6 0.7644 -9.1044 0.1223 18 7 1.3555 -8.7729 -0.9811 19 14 0.1568 -10.8538 0.3673 20 1 -0.4796 -10.9742 1.7035 21 1 -0.8369 -11.1846 -0.6855 22 1 1.3036 -11.7931 0.2782 23 6 1.4714 -5.9748 1.9462 24 7 1.7850 -6.5683 3.2653 25 8 2.4100 -5.8529 4.1775 26 8 1.4344 -7.8101 3.5289 27 6 1.7636 -4.6716 1.6988 28 1 -0.3634 -1.0275 0.0131 29 1 -0.3632 0.5251 0.8835 30 1 -0.3633 0.5026 -0.8964 31 1 1.6828 1.8825 -0.9110 32 1 1.6135 1.9091 0.8682 33 1 3.9223 2.3397 0.0030 34 1 3.8386 0.8641 0.9964 35 1 3.8392 -1.3088 -0.1693 36 1 3.9215 -1.2984 -1.9481 37 1 1.9267 -2.7821 -1.8831 38 1 0.3789 -2.1803 -1.2425 39 1 2.1825 -2.2481 0.9003 40 1 0.6425 -4.4390 -1.5118 41 1 0.1077 -6.7811 -1.0964 42 1 1.4824 -9.4327 -1.6805 43 1 2.2254 -4.0682 2.4664 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169658456.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:45 Heat of formation + Delta-G solvation = -14.030494 kcal Electronic energy + Delta-G solvation = -27285.738187 eV Core-core repulsion = 23334.213664 eV Total energy + Delta-G solvation = -3951.524523 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.04953 -40.27496 -38.28284 -37.34808 -36.57085 -35.35396 -34.09965 -32.93337 -31.99386 -30.88229 -29.76857 -28.12006 -26.54381 -25.78852 -25.13374 -23.77659 -23.17423 -21.97208 -20.66193 -20.05779 -18.63660 -18.00932 -17.53246 -17.46000 -17.33759 -16.77656 -16.54989 -16.20480 -15.90879 -15.78789 -15.59167 -15.25925 -14.89880 -14.75846 -14.63992 -14.56728 -14.01384 -13.62823 -13.44826 -13.25952 -13.07229 -12.90843 -12.83562 -12.75461 -12.35199 -12.19036 -11.96888 -11.91287 -11.57213 -11.50436 -11.08218 -10.97182 -10.93432 -10.67024 -10.43809 -10.04534 -9.43525 -9.39197 -8.48685 -6.66005 -0.91573 0.78691 1.10210 1.31548 1.46629 1.51979 1.65798 2.10576 2.25611 2.57937 2.84531 2.94976 3.12926 3.71323 3.77596 3.94853 4.07281 4.14909 4.26298 4.27257 4.31578 4.37897 4.54638 4.56489 4.59323 4.63007 4.69597 4.74847 4.75382 4.78434 4.87216 4.99209 5.06640 5.07571 5.12522 5.34414 5.52651 5.62739 5.79842 5.92051 5.96560 6.04058 6.08716 6.13014 6.43084 6.68765 6.95298 7.22777 7.48985 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018924 B = 0.003167 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.269586 B = 8838.279140 C = 9583.302988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.551 5.551 3 C 0.023 3.977 4 C 0.057 3.943 5 O -0.400 6.400 6 C 0.066 3.934 7 C 0.047 3.953 8 H 0.076 0.924 9 C 0.132 3.868 10 N -0.718 5.718 11 C 0.204 3.796 12 C -0.139 4.139 13 C -0.056 4.056 14 C 0.014 3.986 15 C -0.260 4.260 16 H 0.112 0.888 17 C 0.019 3.981 18 N -0.693 5.693 19 Si 1.001 2.999 20 H -0.265 1.265 21 H -0.224 1.224 22 H -0.255 1.255 23 C -0.022 4.022 24 N 0.014 4.986 25 O -0.508 6.508 26 O -0.421 6.421 27 C -0.220 4.220 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.038 0.962 31 H 0.047 0.953 32 H 0.097 0.903 33 H 0.117 0.883 34 H 0.051 0.949 35 H 0.048 0.952 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.402 0.598 40 H 0.162 0.838 41 H 0.149 0.851 42 H 0.332 0.668 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.254 13.731 -16.786 22.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.277 5.277 3 C -0.105 4.105 4 C -0.020 4.020 5 O -0.319 6.319 6 C -0.011 4.011 7 C -0.062 4.062 8 H 0.094 0.906 9 C 0.008 3.992 10 N -0.350 5.350 11 C 0.096 3.904 12 C -0.160 4.160 13 C -0.076 4.076 14 C 0.008 3.992 15 C -0.291 4.291 16 H 0.129 0.871 17 C -0.213 4.213 18 N -0.316 5.316 19 Si 0.817 3.183 20 H -0.189 1.189 21 H -0.146 1.146 22 H -0.179 1.179 23 C -0.137 4.137 24 N 0.373 4.627 25 O -0.611 6.611 26 O -0.540 6.540 27 C -0.247 4.247 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.115 0.885 33 H 0.135 0.865 34 H 0.070 0.930 35 H 0.066 0.934 36 H 0.130 0.870 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.237 0.763 40 H 0.179 0.821 41 H 0.166 0.834 42 H 0.147 0.853 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -3.796 13.707 -16.649 21.897 hybrid contribution 0.016 -0.218 1.122 1.143 sum -3.780 13.488 -15.527 20.912 Atomic orbital electron populations 1.22412 0.85964 1.02658 1.01248 1.62124 1.09224 1.14074 1.42308 1.22804 0.95985 0.89271 1.02456 1.22843 0.92716 0.97105 0.89343 1.87963 1.70483 1.24340 1.49127 1.22776 0.91849 0.83487 1.03022 1.22504 0.96037 0.94046 0.93612 0.90646 1.21486 1.00649 0.91598 0.85439 1.43902 1.68076 1.06901 1.16166 1.17322 0.96154 0.85829 0.91136 1.20861 1.02020 0.94154 0.98950 1.21211 0.97967 0.94415 0.94052 1.17786 0.94959 0.94081 0.92357 1.22977 1.14607 0.92274 0.99234 0.87078 1.28829 0.93183 1.07025 0.92287 1.68921 1.16920 1.41561 1.04198 0.84851 0.80164 0.72060 0.81214 1.18913 1.14600 1.17893 1.20013 1.14680 0.95807 0.83244 1.49323 1.07644 1.01501 1.04186 1.95892 1.58013 1.62204 1.44974 1.95810 1.69570 1.00841 1.87731 1.19151 1.13545 0.93723 0.98330 0.91252 0.91039 0.94368 0.93437 0.88487 0.86515 0.93037 0.93390 0.87041 0.89926 0.90904 0.76277 0.82084 0.83371 0.85321 0.88681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 9.24 127.69 1.18 1.58 16 2 N -0.55 -9.76 4.14 -896.06 -3.71 -13.48 16 3 C 0.02 0.34 5.66 86.32 0.49 0.83 16 4 C 0.06 0.93 7.01 72.02 0.50 1.43 16 5 O -0.40 -8.29 10.82 -148.98 -1.61 -9.91 16 6 C 0.07 1.26 6.21 72.01 0.45 1.70 16 7 C 0.05 0.79 2.25 44.92 0.10 0.89 16 8 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 9 C 0.13 2.43 3.91 86.38 0.34 2.76 16 10 N -0.72 -19.44 5.15 -338.96 -1.74 -21.19 16 11 C 0.20 7.37 6.67 39.16 0.26 7.64 16 12 C -0.14 -4.48 9.19 22.18 0.20 -4.27 16 13 C -0.06 -2.15 8.62 22.57 0.19 -1.96 16 14 C 0.01 0.68 5.47 -21.24 -0.12 0.56 16 15 C -0.26 -12.63 7.85 24.76 0.19 -12.43 16 16 H 0.11 6.03 5.78 -2.91 -0.02 6.02 16 17 C 0.02 0.74 5.41 87.22 0.47 1.21 16 18 N -0.69 -25.07 11.55 23.23 0.27 -24.81 16 19 Si 1.00 29.67 29.65 68.60 2.03 31.70 16 20 H -0.27 -8.94 7.11 99.48 0.71 -8.23 16 21 H -0.22 -5.36 7.11 99.48 0.71 -4.65 16 22 H -0.25 -7.39 7.11 99.48 0.71 -6.68 16 23 C -0.02 -1.26 6.90 36.68 0.25 -1.00 16 24 N 0.01 0.95 4.98 -45.75 -0.23 0.72 16 25 O -0.51 -36.43 19.13 3.52 0.07 -36.37 16 26 O -0.42 -28.82 16.22 3.51 0.06 -28.77 16 27 C -0.22 -10.71 9.35 22.18 0.21 -10.50 16 28 H 0.07 1.26 6.23 -2.39 -0.01 1.25 16 29 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.12 1.39 8.14 -2.38 -0.02 1.37 16 34 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.05 1.09 7.26 -2.39 -0.02 1.07 16 36 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 37 H 0.08 1.33 7.65 -2.39 -0.02 1.31 16 38 H 0.07 1.21 6.59 -2.39 -0.02 1.19 16 39 H 0.40 11.55 7.40 -92.70 -0.69 10.86 16 40 H 0.16 3.63 6.65 -2.91 -0.02 3.61 16 41 H 0.15 5.00 6.95 -2.91 -0.02 4.98 16 42 H 0.33 9.62 8.27 -92.71 -0.77 8.85 16 43 H 0.10 4.95 7.54 -2.91 -0.02 4.93 16 Total: -1.00 -80.75 352.17 0.23 -80.52 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: 0.37 Total: 33.14 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: 4.73 Total: -11.57 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -5.42 Total: -58.75 kcal Atomic # 8 Polarization: -73.55 SS G_CDS: -1.49 Total: -75.04 kcal Atomic # 14 Polarization: 29.67 SS G_CDS: 2.03 Total: 31.70 kcal Total: -80.75 0.23 -80.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169658456.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.490 kcal (2) G-P(sol) polarization free energy of solvation -80.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds