Wall clock time and date at job start Tue Mar 31 2020 13:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47018 * 111.00367 * 2 1 4 4 C 1.53096 * 109.25687 * 182.39134 * 3 2 1 5 5 O 1.43009 * 109.26412 * 303.15463 * 4 3 2 6 6 C 1.43019 * 113.74023 * 58.67009 * 5 4 3 7 7 C 1.47016 * 111.00182 * 123.63977 * 2 1 3 8 8 H 1.09000 * 109.50615 * 297.58488 * 7 2 1 9 9 C 1.53000 * 109.50753 * 57.67059 * 7 2 1 10 10 N 1.46497 * 109.46986 * 54.34309 * 9 7 2 11 11 C 1.37662 * 119.99782 * 184.47805 * 10 9 7 12 12 C 1.40185 * 119.81322 * 0.02591 * 11 10 9 13 13 C 1.35794 * 120.19584 * 179.97438 * 12 11 10 14 14 C 1.41759 * 119.80077 * 359.79284 * 13 12 11 15 15 C 1.39512 * 120.18596 * 180.22583 * 14 13 12 16 16 H 1.08000 * 120.00474 * 218.14664 * 15 14 13 17 17 C 1.46596 * 119.99729 * 38.15413 * 15 14 13 18 18 N 1.29486 * 120.00209 * 7.86440 * 17 15 14 19 19 Si 1.86805 * 119.99546 * 187.86509 * 17 15 14 20 20 H 1.48493 * 109.47385 * 59.99998 * 19 17 15 21 21 H 1.48499 * 109.46833 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47048 * 299.99617 * 19 17 15 23 23 C 1.41721 * 119.63022 * 0.45705 * 14 13 12 24 24 N 1.48005 * 120.10017 * 179.79319 * 23 14 13 25 25 O 1.31698 * 120.00266 * 176.21345 * 24 23 14 26 26 O 1.31710 * 119.99935 * 355.94624 * 24 23 14 27 27 C 1.35841 * 119.80195 * 359.52171 * 23 14 13 28 28 H 1.09004 * 109.46631 * 290.37462 * 1 2 3 29 29 H 1.09008 * 109.47067 * 50.36426 * 1 2 3 30 30 H 1.08998 * 109.47482 * 170.36737 * 1 2 3 31 31 H 1.08996 * 109.50539 * 302.33054 * 3 2 1 32 32 H 1.08998 * 109.50328 * 62.46351 * 3 2 1 33 33 H 1.08997 * 109.50884 * 63.09244 * 4 3 2 34 34 H 1.08998 * 109.50430 * 183.17296 * 4 3 2 35 35 H 1.08997 * 109.50731 * 181.39816 * 6 5 4 36 36 H 1.09000 * 109.50523 * 61.26605 * 6 5 4 37 37 H 1.09005 * 109.46938 * 294.34315 * 9 7 2 38 38 H 1.08999 * 109.47361 * 174.34680 * 9 7 2 39 39 H 0.97000 * 120.00558 * 4.48030 * 10 9 7 40 40 H 1.08004 * 119.89916 * 359.97438 * 12 11 10 41 41 H 1.07994 * 120.10543 * 180.02562 * 13 12 11 42 42 H 0.96996 * 120.00054 * 180.02562 * 18 17 15 43 43 H 1.07993 * 119.89889 * 180.27424 * 27 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5250 1.3263 -0.0603 5 8 4.0175 0.5572 1.0402 6 6 3.5250 -0.7851 1.0708 7 6 1.9958 -0.7603 1.1426 8 1 1.6821 -0.2849 2.0720 9 6 1.4589 -2.1922 1.0948 10 7 1.7667 -2.7858 -0.2087 11 6 1.2996 -4.0428 -0.5201 12 6 0.5295 -4.7510 0.4128 13 6 0.0643 -5.9912 0.1136 14 6 0.3560 -6.5676 -1.1483 15 6 -0.1217 -7.8393 -1.4659 16 1 0.4954 -8.5225 -2.0305 17 6 -1.4614 -8.2480 -1.0335 18 7 -2.2589 -7.3835 -0.4919 19 14 -2.0181 -10.0163 -1.2637 20 1 -1.1084 -10.9227 -0.5182 21 1 -3.4020 -10.1707 -0.7476 22 1 -1.9865 -10.3612 -2.7077 23 6 1.1398 -5.8467 -2.0834 24 7 1.4545 -6.4404 -3.4022 25 8 2.1192 -5.7402 -4.2979 26 8 1.0743 -7.6709 -3.6780 27 6 1.5968 -4.6070 -1.7680 28 1 -0.3633 0.3578 0.9634 29 1 -0.3633 0.6556 -0.7915 30 1 -0.3634 -1.0131 -0.1720 31 1 1.6134 1.9092 -0.8681 32 1 1.6829 1.8825 0.9111 33 1 3.8385 0.8643 -0.9964 34 1 3.9222 2.3397 -0.0037 35 1 3.9222 -1.2987 1.9463 36 1 3.8385 -1.3085 0.1676 37 1 0.3791 -2.1805 1.2429 38 1 1.9272 -2.7824 1.8825 39 1 2.2995 -2.2932 -0.8524 40 1 0.3054 -4.3089 1.3724 41 1 -0.5292 -6.5354 0.8332 42 1 -3.1452 -7.6541 -0.2054 43 1 2.1904 -4.0545 -2.4812 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169658457.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:49 Heat of formation + Delta-G solvation = 7.457545 kcal Electronic energy + Delta-G solvation = -27312.438162 eV Core-core repulsion = 23361.845430 eV Total energy + Delta-G solvation = -3950.592732 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.12217 -38.65186 -36.82012 -36.07903 -35.10985 -33.82145 -32.35379 -31.73932 -30.27880 -29.45326 -28.76190 -26.73472 -25.10240 -24.34737 -23.98827 -22.81775 -21.47579 -20.60925 -19.52706 -18.17875 -17.10903 -16.66739 -16.61064 -16.16832 -15.74225 -15.53605 -15.42613 -15.16398 -14.69244 -14.37103 -14.06152 -13.99074 -13.88460 -13.55262 -13.12406 -12.97194 -12.64514 -12.46472 -12.28114 -12.03305 -11.92710 -11.54940 -11.51541 -11.38557 -11.22353 -11.08159 -10.75371 -10.53874 -10.34738 -9.92717 -9.80205 -9.27771 -9.19842 -8.90344 -8.71319 -8.60908 -8.25373 -7.59960 -6.85471 -4.71964 1.08130 2.48694 2.79097 2.82149 2.90224 2.98096 3.29726 3.49490 3.53469 3.63224 4.02496 4.14504 4.55162 4.62699 4.69260 4.90489 4.96759 5.00269 5.05459 5.30169 5.34586 5.36932 5.51624 5.55522 5.62103 5.69015 5.77252 5.82656 5.84886 5.90058 6.23585 6.36031 6.47761 6.69593 6.72889 6.80757 6.85091 6.90358 7.10299 7.33721 7.41914 7.60633 7.94720 8.03677 8.16292 8.30014 8.50599 8.99607 9.30423 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018933 B = 0.003203 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.521167 B = 8740.465537 C = 9559.028555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.531 5.531 3 C 0.018 3.982 4 C 0.061 3.939 5 O -0.386 6.386 6 C 0.068 3.932 7 C 0.038 3.962 8 H 0.059 0.941 9 C 0.143 3.857 10 N -0.737 5.737 11 C 0.128 3.872 12 C -0.140 4.140 13 C -0.084 4.084 14 C 0.076 3.924 15 C -0.333 4.333 16 H 0.131 0.869 17 C 0.057 3.943 18 N -0.723 5.723 19 Si 0.936 3.064 20 H -0.252 1.252 21 H -0.272 1.272 22 H -0.248 1.248 23 C -0.056 4.056 24 N 0.038 4.962 25 O -0.373 6.373 26 O -0.295 6.295 27 C -0.135 4.135 28 H 0.024 0.976 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.040 0.960 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.398 0.602 40 H 0.107 0.893 41 H 0.126 0.874 42 H 0.303 0.697 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.661 12.438 10.504 16.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.257 5.257 3 C -0.110 4.110 4 C -0.016 4.016 5 O -0.305 6.305 6 C -0.009 4.009 7 C -0.071 4.071 8 H 0.077 0.923 9 C 0.017 3.983 10 N -0.373 5.373 11 C 0.026 3.974 12 C -0.161 4.161 13 C -0.104 4.104 14 C 0.071 3.929 15 C -0.362 4.362 16 H 0.148 0.852 17 C -0.173 4.173 18 N -0.345 5.345 19 Si 0.757 3.243 20 H -0.176 1.176 21 H -0.196 1.196 22 H -0.172 1.172 23 C -0.160 4.160 24 N 0.448 4.552 25 O -0.510 6.510 26 O -0.450 6.450 27 C -0.161 4.161 28 H 0.043 0.957 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.104 0.896 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.233 0.767 40 H 0.125 0.875 41 H 0.144 0.856 42 H 0.116 0.884 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.704 12.558 10.563 16.425 hybrid contribution -0.740 -0.075 -0.112 0.752 sum -0.035 12.483 10.451 16.280 Atomic orbital electron populations 1.22429 0.86376 1.03620 0.99960 1.62136 1.08716 1.12827 1.41973 1.22816 0.96509 0.90092 1.01620 1.22676 0.92210 0.96403 0.90273 1.87980 1.69952 1.24070 1.48464 1.22736 0.91348 0.83617 1.03193 1.22614 0.96578 0.95016 0.92849 0.92306 1.21088 0.99521 0.90427 0.87308 1.43493 1.61331 1.15787 1.16695 1.17073 1.00046 0.86715 0.93578 1.20418 1.01399 0.95831 0.98440 1.20980 0.99159 0.94792 0.95432 1.17252 0.92221 0.93063 0.90380 1.22183 0.96466 0.97790 1.19755 0.85190 1.27996 0.96560 1.01529 0.91234 1.69052 1.07674 1.37526 1.20260 0.85847 0.78106 0.78710 0.81642 1.17573 1.19623 1.17171 1.19422 1.17511 0.95768 0.83348 1.49573 1.00709 1.01566 1.03332 1.96045 1.47819 1.62439 1.44686 1.95991 1.60605 0.99710 1.88674 1.19285 1.05864 0.94768 0.96134 0.95712 0.91412 0.90021 0.89555 0.94159 0.92034 0.88565 0.88211 0.91659 0.92437 0.92446 0.76688 0.87511 0.85614 0.88435 0.86620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.02 60.06 0.54 0.79 16 2 N -0.53 -5.65 4.27 -234.57 -1.00 -6.66 16 3 C 0.02 0.16 5.65 -3.71 -0.02 0.14 16 4 C 0.06 0.56 7.01 37.21 0.26 0.82 16 5 O -0.39 -4.35 10.83 -35.23 -0.38 -4.73 16 6 C 0.07 0.72 6.20 37.21 0.23 0.95 16 7 C 0.04 0.40 2.24 -67.60 -0.15 0.25 16 8 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 9 C 0.14 1.68 3.90 -4.04 -0.02 1.67 16 10 N -0.74 -11.01 5.21 -58.49 -0.30 -11.32 16 11 C 0.13 2.44 6.67 -83.80 -0.56 1.89 16 12 C -0.14 -2.62 9.19 -39.73 -0.37 -2.99 16 13 C -0.08 -1.78 8.62 -39.11 -0.34 -2.12 16 14 C 0.08 1.88 5.48 -106.75 -0.58 1.30 16 15 C -0.33 -8.14 7.87 -35.74 -0.28 -8.42 16 16 H 0.13 3.33 5.76 -52.49 -0.30 3.03 16 17 C 0.06 1.23 5.42 -15.17 -0.08 1.14 16 18 N -0.72 -15.19 11.51 55.99 0.64 -14.55 16 19 Si 0.94 16.23 29.65 -169.99 -5.04 11.19 16 20 H -0.25 -4.25 7.11 56.52 0.40 -3.85 16 21 H -0.27 -4.38 7.11 56.52 0.40 -3.98 16 22 H -0.25 -4.55 7.11 56.52 0.40 -4.15 16 23 C -0.06 -1.47 6.90 -79.48 -0.55 -2.02 16 24 N 0.04 1.10 4.98 34.19 0.17 1.27 16 25 O -0.37 -11.20 19.13 -31.57 -0.60 -11.80 16 26 O -0.29 -8.74 16.21 -31.57 -0.51 -9.26 16 27 C -0.13 -3.09 9.35 -39.73 -0.37 -3.46 16 28 H 0.02 0.23 8.12 -51.93 -0.42 -0.19 16 29 H 0.07 0.64 8.05 -51.92 -0.42 0.23 16 30 H 0.08 0.99 6.75 -51.93 -0.35 0.64 16 31 H 0.09 0.68 8.09 -51.93 -0.42 0.26 16 32 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.07 0.75 7.06 -51.93 -0.37 0.38 16 37 H 0.06 0.70 6.37 -51.93 -0.33 0.37 16 38 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 39 H 0.40 5.93 7.25 -40.82 -0.30 5.63 16 40 H 0.11 1.68 6.65 -52.48 -0.35 1.33 16 41 H 0.13 2.57 6.91 -52.49 -0.36 2.21 16 42 H 0.30 5.55 8.27 -40.82 -0.34 5.21 16 43 H 0.12 2.65 7.54 -52.49 -0.40 2.26 16 LS Contribution 352.20 15.07 5.31 5.31 Total: -1.00 -30.29 352.20 -9.68 -39.97 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -5.68 Total: 10.63 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -2.28 Total: -10.06 kcal Atomic # 7 Polarization: -30.76 SS G_CDS: -0.49 Total: -31.25 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -1.50 Total: -25.79 kcal Atomic # 14 Polarization: 16.23 SS G_CDS: -5.04 Total: 11.19 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -30.29 -9.68 -39.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169658457.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.430 kcal (2) G-P(sol) polarization free energy of solvation -30.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds