Wall clock time and date at job start Tue Mar 31 2020 13:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47018 * 111.00367 * 2 1 4 4 C 1.53096 * 109.25687 * 182.39134 * 3 2 1 5 5 O 1.43009 * 109.26412 * 303.15463 * 4 3 2 6 6 C 1.43019 * 113.74023 * 58.67009 * 5 4 3 7 7 C 1.47016 * 111.00182 * 123.63977 * 2 1 3 8 8 H 1.09000 * 109.50615 * 297.58488 * 7 2 1 9 9 C 1.53000 * 109.50753 * 57.67059 * 7 2 1 10 10 N 1.46497 * 109.46986 * 54.34309 * 9 7 2 11 11 C 1.37662 * 119.99782 * 184.47805 * 10 9 7 12 12 C 1.40185 * 119.81322 * 0.02591 * 11 10 9 13 13 C 1.35794 * 120.19584 * 179.97438 * 12 11 10 14 14 C 1.41759 * 119.80077 * 359.79284 * 13 12 11 15 15 C 1.39512 * 120.18596 * 180.22583 * 14 13 12 16 16 H 1.08000 * 120.00474 * 218.14664 * 15 14 13 17 17 C 1.46596 * 119.99729 * 38.15413 * 15 14 13 18 18 N 1.29486 * 120.00209 * 7.86440 * 17 15 14 19 19 Si 1.86805 * 119.99546 * 187.86509 * 17 15 14 20 20 H 1.48493 * 109.47385 * 59.99998 * 19 17 15 21 21 H 1.48499 * 109.46833 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47048 * 299.99617 * 19 17 15 23 23 C 1.41721 * 119.63022 * 0.45705 * 14 13 12 24 24 N 1.48005 * 120.10017 * 179.79319 * 23 14 13 25 25 O 1.31698 * 120.00266 * 176.21345 * 24 23 14 26 26 O 1.31710 * 119.99935 * 355.94624 * 24 23 14 27 27 C 1.35841 * 119.80195 * 359.52171 * 23 14 13 28 28 H 1.09004 * 109.46631 * 290.37462 * 1 2 3 29 29 H 1.09008 * 109.47067 * 50.36426 * 1 2 3 30 30 H 1.08998 * 109.47482 * 170.36737 * 1 2 3 31 31 H 1.08996 * 109.50539 * 302.33054 * 3 2 1 32 32 H 1.08998 * 109.50328 * 62.46351 * 3 2 1 33 33 H 1.08997 * 109.50884 * 63.09244 * 4 3 2 34 34 H 1.08998 * 109.50430 * 183.17296 * 4 3 2 35 35 H 1.08997 * 109.50731 * 181.39816 * 6 5 4 36 36 H 1.09000 * 109.50523 * 61.26605 * 6 5 4 37 37 H 1.09005 * 109.46938 * 294.34315 * 9 7 2 38 38 H 1.08999 * 109.47361 * 174.34680 * 9 7 2 39 39 H 0.97000 * 120.00558 * 4.48030 * 10 9 7 40 40 H 1.08004 * 119.89916 * 359.97438 * 12 11 10 41 41 H 1.07994 * 120.10543 * 180.02562 * 13 12 11 42 42 H 0.96996 * 120.00054 * 180.02562 * 18 17 15 43 43 H 1.07993 * 119.89889 * 180.27424 * 27 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5250 1.3263 -0.0603 5 8 4.0175 0.5572 1.0402 6 6 3.5250 -0.7851 1.0708 7 6 1.9958 -0.7603 1.1426 8 1 1.6821 -0.2849 2.0720 9 6 1.4589 -2.1922 1.0948 10 7 1.7667 -2.7858 -0.2087 11 6 1.2996 -4.0428 -0.5201 12 6 0.5295 -4.7510 0.4128 13 6 0.0643 -5.9912 0.1136 14 6 0.3560 -6.5676 -1.1483 15 6 -0.1217 -7.8393 -1.4659 16 1 0.4954 -8.5225 -2.0305 17 6 -1.4614 -8.2480 -1.0335 18 7 -2.2589 -7.3835 -0.4919 19 14 -2.0181 -10.0163 -1.2637 20 1 -1.1084 -10.9227 -0.5182 21 1 -3.4020 -10.1707 -0.7476 22 1 -1.9865 -10.3612 -2.7077 23 6 1.1398 -5.8467 -2.0834 24 7 1.4545 -6.4404 -3.4022 25 8 2.1192 -5.7402 -4.2979 26 8 1.0743 -7.6709 -3.6780 27 6 1.5968 -4.6070 -1.7680 28 1 -0.3633 0.3578 0.9634 29 1 -0.3633 0.6556 -0.7915 30 1 -0.3634 -1.0131 -0.1720 31 1 1.6134 1.9092 -0.8681 32 1 1.6829 1.8825 0.9111 33 1 3.8385 0.8643 -0.9964 34 1 3.9222 2.3397 -0.0037 35 1 3.9222 -1.2987 1.9463 36 1 3.8385 -1.3085 0.1676 37 1 0.3791 -2.1805 1.2429 38 1 1.9272 -2.7824 1.8825 39 1 2.2995 -2.2932 -0.8524 40 1 0.3054 -4.3089 1.3724 41 1 -0.5292 -6.5354 0.8332 42 1 -3.1452 -7.6541 -0.2054 43 1 2.1904 -4.0545 -2.4812 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169658457.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:48 Heat of formation + Delta-G solvation = -14.571040 kcal Electronic energy + Delta-G solvation = -27313.393393 eV Core-core repulsion = 23361.845430 eV Total energy + Delta-G solvation = -3951.547963 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.04703 -40.27401 -38.27872 -37.34163 -36.57129 -35.36139 -34.09710 -32.93564 -31.99210 -30.88371 -29.76914 -28.10937 -26.53713 -25.79321 -25.13845 -23.77691 -23.18005 -21.97517 -20.66293 -20.05827 -18.64479 -18.00873 -17.51343 -17.46155 -17.32673 -16.75478 -16.55433 -16.22058 -15.90890 -15.78738 -15.57841 -15.30131 -14.89090 -14.73022 -14.60374 -14.57045 -13.95899 -13.78181 -13.36262 -13.21846 -13.10455 -12.92636 -12.84986 -12.75149 -12.37173 -12.20458 -11.96858 -11.92927 -11.55072 -11.51812 -11.07951 -10.96093 -10.92744 -10.64919 -10.46232 -10.04513 -9.43448 -9.38007 -8.49207 -6.66138 -0.91330 0.79623 1.10345 1.30863 1.46923 1.50422 1.66029 2.08723 2.27350 2.58979 2.84260 2.94673 3.13021 3.71565 3.77758 3.95393 4.07109 4.14745 4.25870 4.27192 4.31247 4.37623 4.54076 4.55622 4.60624 4.61177 4.70094 4.75004 4.76167 4.78311 4.87262 4.98765 5.06366 5.07177 5.12234 5.34129 5.52636 5.62460 5.79815 5.93094 5.96583 6.03750 6.08375 6.13075 6.43221 6.68774 6.94648 7.23032 7.48465 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018933 B = 0.003203 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.521167 B = 8740.465537 C = 9559.028555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.551 5.551 3 C 0.022 3.978 4 C 0.057 3.943 5 O -0.399 6.399 6 C 0.066 3.934 7 C 0.046 3.954 8 H 0.076 0.924 9 C 0.133 3.867 10 N -0.717 5.717 11 C 0.205 3.795 12 C -0.139 4.139 13 C -0.056 4.056 14 C 0.014 3.986 15 C -0.260 4.260 16 H 0.113 0.887 17 C 0.019 3.981 18 N -0.693 5.693 19 Si 1.001 2.999 20 H -0.239 1.239 21 H -0.231 1.231 22 H -0.274 1.274 23 C -0.022 4.022 24 N 0.014 4.986 25 O -0.508 6.508 26 O -0.422 6.422 27 C -0.220 4.220 28 H 0.039 0.961 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.047 0.953 33 H 0.052 0.948 34 H 0.117 0.883 35 H 0.114 0.886 36 H 0.049 0.951 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.401 0.599 40 H 0.161 0.839 41 H 0.149 0.851 42 H 0.332 0.668 43 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.072 13.322 17.275 22.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.277 5.277 3 C -0.106 4.106 4 C -0.019 4.019 5 O -0.318 6.318 6 C -0.011 4.011 7 C -0.063 4.063 8 H 0.093 0.907 9 C 0.009 3.991 10 N -0.349 5.349 11 C 0.096 3.904 12 C -0.160 4.160 13 C -0.076 4.076 14 C 0.008 3.992 15 C -0.291 4.291 16 H 0.130 0.870 17 C -0.213 4.213 18 N -0.316 5.316 19 Si 0.817 3.183 20 H -0.162 1.162 21 H -0.153 1.153 22 H -0.199 1.199 23 C -0.137 4.137 24 N 0.373 4.627 25 O -0.611 6.611 26 O -0.540 6.540 27 C -0.248 4.248 28 H 0.057 0.943 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.114 0.886 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.135 0.865 35 H 0.132 0.868 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.101 0.899 39 H 0.236 0.764 40 H 0.178 0.822 41 H 0.167 0.833 42 H 0.147 0.853 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.909 13.409 17.027 21.867 hybrid contribution -0.140 -0.172 -1.191 1.212 sum -3.050 13.237 15.836 20.863 Atomic orbital electron populations 1.22369 0.86124 1.02632 1.00932 1.62130 1.09082 1.14025 1.42420 1.22816 0.96114 0.89296 1.02374 1.22828 0.92578 0.97150 0.89377 1.87966 1.70417 1.24331 1.49104 1.22793 0.91664 0.83543 1.03130 1.22538 0.96193 0.94052 0.93482 0.90673 1.21477 1.00763 0.91572 0.85318 1.43881 1.58777 1.14022 1.18235 1.17311 0.94984 0.86858 0.91211 1.20858 1.00254 0.94775 1.00116 1.21216 0.97433 0.95358 0.93625 1.17779 0.95042 0.93905 0.92478 1.22960 0.96727 0.96843 1.12564 0.86966 1.28826 0.94870 1.05944 0.91669 1.68915 1.08574 1.38988 1.15122 0.84944 0.79993 0.73012 0.80369 1.16191 1.15338 1.19853 1.20009 1.14450 0.96532 0.82746 1.49320 1.06971 1.01764 1.04625 1.95892 1.54291 1.63710 1.47232 1.95806 1.66042 1.01873 1.90316 1.19143 1.11570 0.95503 0.98566 0.94277 0.91059 0.91811 0.88634 0.93477 0.92990 0.86512 0.86779 0.93247 0.90996 0.89928 0.76400 0.82154 0.83348 0.85294 0.88684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.02 127.69 1.15 1.62 16 2 N -0.55 -10.09 4.27 -896.05 -3.83 -13.92 16 3 C 0.02 0.33 5.65 86.31 0.49 0.82 16 4 C 0.06 0.93 7.01 72.01 0.50 1.43 16 5 O -0.40 -8.03 10.83 -148.98 -1.61 -9.65 16 6 C 0.07 1.20 6.20 72.02 0.45 1.64 16 7 C 0.05 0.77 2.24 44.93 0.10 0.87 16 8 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 9 C 0.13 2.44 3.90 86.38 0.34 2.78 16 10 N -0.72 -19.41 5.21 -338.95 -1.77 -21.18 16 11 C 0.21 7.41 6.67 39.16 0.26 7.67 16 12 C -0.14 -4.50 9.19 22.18 0.20 -4.29 16 13 C -0.06 -2.15 8.62 22.57 0.19 -1.96 16 14 C 0.01 0.67 5.48 -21.24 -0.12 0.55 16 15 C -0.26 -12.62 7.87 24.76 0.19 -12.43 16 16 H 0.11 6.06 5.76 -2.91 -0.02 6.04 16 17 C 0.02 0.75 5.42 87.22 0.47 1.22 16 18 N -0.69 -25.02 11.51 23.22 0.27 -24.75 16 19 Si 1.00 29.64 29.65 68.60 2.03 31.68 16 20 H -0.24 -6.70 7.11 99.48 0.71 -6.00 16 21 H -0.23 -5.53 7.11 99.48 0.71 -4.82 16 22 H -0.27 -9.40 7.11 99.48 0.71 -8.70 16 23 C -0.02 -1.25 6.90 36.68 0.25 -0.99 16 24 N 0.01 0.96 4.98 -45.75 -0.23 0.73 16 25 O -0.51 -36.50 19.13 3.52 0.07 -36.43 16 26 O -0.42 -28.91 16.21 3.50 0.06 -28.86 16 27 C -0.22 -10.73 9.35 22.17 0.21 -10.52 16 28 H 0.04 0.56 8.12 -2.38 -0.02 0.54 16 29 H 0.07 1.17 8.05 -2.38 -0.02 1.15 16 30 H 0.06 1.32 6.75 -2.39 -0.02 1.31 16 31 H 0.10 1.28 8.09 -2.39 -0.02 1.26 16 32 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.05 1.05 7.06 -2.39 -0.02 1.04 16 37 H 0.07 1.25 6.37 -2.38 -0.02 1.24 16 38 H 0.08 1.27 8.09 -2.39 -0.02 1.25 16 39 H 0.40 11.46 7.25 -92.71 -0.67 10.79 16 40 H 0.16 3.64 6.65 -2.91 -0.02 3.62 16 41 H 0.15 5.03 6.91 -2.91 -0.02 5.01 16 42 H 0.33 9.66 8.27 -92.71 -0.77 8.90 16 43 H 0.10 4.95 7.54 -2.91 -0.02 4.93 16 Total: -1.00 -80.76 352.20 0.07 -80.69 By element: Atomic # 1 Polarization: 32.88 SS G_CDS: 0.38 Total: 33.27 kcal Atomic # 6 Polarization: -16.27 SS G_CDS: 4.70 Total: -11.58 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -5.55 Total: -59.12 kcal Atomic # 8 Polarization: -73.45 SS G_CDS: -1.49 Total: -74.94 kcal Atomic # 14 Polarization: 29.64 SS G_CDS: 2.03 Total: 31.68 kcal Total: -80.76 0.07 -80.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169658457.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.117 kcal (2) G-P(sol) polarization free energy of solvation -80.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds