Wall clock time and date at job start Tue Mar 31 2020 13:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47015 * 111.03521 * 2 1 4 4 C 1.53099 * 109.29339 * 177.65559 * 3 2 1 5 5 O 1.43018 * 109.26206 * 56.82345 * 4 3 2 6 6 C 1.43011 * 113.73599 * 301.33078 * 5 4 3 7 7 C 1.47012 * 110.99984 * 236.34286 * 2 1 3 8 8 H 1.09001 * 109.50820 * 62.40877 * 7 2 1 9 9 C 1.52999 * 109.50879 * 302.32438 * 7 2 1 10 10 N 1.46498 * 109.47137 * 304.41320 * 9 7 2 11 11 C 1.39672 * 120.00242 * 184.58980 * 10 9 7 12 12 C 1.38171 * 119.98988 * 6.66283 * 11 10 9 13 13 C 1.41132 * 119.50628 * 179.97438 * 12 11 10 14 14 C 1.40351 * 120.25290 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00327 * 331.46830 * 14 13 12 16 16 C 1.46527 * 120.00328 * 151.47529 * 14 13 12 17 17 N 1.29520 * 119.99608 * 348.71734 * 16 14 13 18 18 Si 1.86791 * 120.00344 * 168.72089 * 16 14 13 19 19 H 1.48501 * 109.47493 * 59.99794 * 18 16 14 20 20 H 1.48504 * 109.47497 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47282 * 299.99936 * 18 16 14 22 22 C 1.41336 * 119.49557 * 0.02562 * 13 12 11 23 23 C 1.36495 * 119.96226 * 359.76505 * 22 13 12 24 24 C 1.38663 * 120.49805 * 0.48970 * 23 22 13 25 25 N 1.48016 * 119.74150 * 179.76364 * 24 23 22 26 26 O 1.31702 * 120.00157 * 38.34738 * 25 24 23 27 27 O 1.31696 * 120.00197 * 218.07189 * 25 24 23 28 28 H 1.09008 * 109.46882 * 189.64515 * 1 2 3 29 29 H 1.08996 * 109.46941 * 309.63718 * 1 2 3 30 30 H 1.08998 * 109.47514 * 69.64696 * 1 2 3 31 31 H 1.08999 * 109.50612 * 57.69295 * 3 2 1 32 32 H 1.09006 * 109.50715 * 297.60632 * 3 2 1 33 33 H 1.09004 * 109.50431 * 296.88739 * 4 3 2 34 34 H 1.09005 * 109.54259 * 176.78559 * 4 3 2 35 35 H 1.08992 * 109.51152 * 298.73580 * 6 5 4 36 36 H 1.09001 * 109.50299 * 178.60350 * 6 5 4 37 37 H 1.08998 * 109.47460 * 184.40817 * 9 7 2 38 38 H 1.09003 * 109.47441 * 64.40639 * 9 7 2 39 39 H 0.97000 * 120.00122 * 4.58334 * 10 9 7 40 40 H 1.08002 * 120.24894 * 0.02562 * 12 11 10 41 41 H 0.96998 * 120.00065 * 179.97438 * 17 16 14 42 42 H 1.07996 * 120.02214 * 179.97438 * 22 13 12 43 43 H 1.07997 * 119.75385 * 180.23182 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9967 1.3722 0.0000 4 6 3.5258 1.3261 0.0591 5 8 4.0176 0.5569 -1.0418 6 6 3.5250 -0.7854 -1.0718 7 6 1.9958 -0.7607 -1.1424 8 1 1.6820 -0.2856 -2.0719 9 6 1.4590 -2.1926 -1.0941 10 7 1.7928 -2.7958 0.1985 11 6 1.4895 -4.1373 0.4423 12 6 1.0022 -4.9316 -0.5778 13 6 0.6997 -6.2858 -0.3202 14 6 0.2033 -7.1067 -1.3448 15 1 -0.3707 -6.6758 -2.1518 16 6 0.4637 -8.5484 -1.3195 17 7 1.3255 -9.0363 -0.4847 18 14 -0.4470 -9.6828 -2.4913 19 1 -0.1503 -9.2892 -3.8921 20 1 -0.0064 -11.0831 -2.2673 21 1 -1.9080 -9.5778 -2.2465 22 6 0.8993 -6.8088 0.9775 23 6 1.3859 -6.0062 1.9686 24 6 1.6779 -4.6744 1.7158 25 7 2.1998 -3.8178 2.8042 26 8 3.0568 -4.3089 3.6754 27 8 1.8114 -2.5629 2.8984 28 1 -0.3633 -1.0132 0.1722 29 1 -0.3633 0.6556 0.7914 30 1 -0.3634 0.3574 -0.9635 31 1 1.6148 1.9090 0.8684 32 1 1.6829 1.8828 -0.9105 33 1 3.8401 0.8642 0.9951 34 1 3.9237 2.3393 0.0018 35 1 3.8392 -1.3087 -0.1688 36 1 3.9216 -1.2991 -1.9476 37 1 1.9107 -2.7772 -1.8954 38 1 0.3763 -2.1792 -1.2199 39 1 2.2245 -2.2637 0.8851 40 1 0.8547 -4.5195 -1.5651 41 1 1.4976 -9.9907 -0.4676 42 1 0.6702 -7.8438 1.1842 43 1 1.5406 -6.4103 2.9580 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169660207.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:53 Heat of formation + Delta-G solvation = -0.225278 kcal Electronic energy + Delta-G solvation = -27791.775410 eV Core-core repulsion = 23840.849526 eV Total energy + Delta-G solvation = -3950.925884 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.98491 -38.73891 -36.86963 -36.28738 -35.04182 -33.88302 -32.93331 -31.63228 -30.70784 -29.05173 -28.07004 -26.83467 -25.96928 -24.19576 -23.68435 -22.81934 -21.04850 -20.88129 -19.59996 -18.18750 -17.22243 -16.79205 -16.54518 -16.40926 -15.94918 -15.62059 -15.51193 -15.07314 -14.73799 -14.48096 -14.06670 -13.78652 -13.58810 -13.38583 -13.20960 -12.96296 -12.53520 -12.40719 -12.22333 -11.93904 -11.79599 -11.59914 -11.52256 -11.37601 -11.12237 -11.04819 -10.65011 -10.59551 -10.04879 -10.00534 -9.88396 -9.74782 -9.63548 -9.47490 -9.20949 -8.40789 -8.18006 -7.53248 -6.80188 -5.05302 0.86475 2.37967 2.69083 2.72043 2.77395 2.79454 2.87106 3.39828 3.62157 3.77568 3.95810 4.06259 4.68873 4.76837 4.84199 5.05602 5.08347 5.15427 5.20194 5.44517 5.50737 5.51522 5.63024 5.68863 5.72507 5.80371 5.82557 5.91892 6.04433 6.19463 6.33334 6.39481 6.50606 6.61740 6.83980 6.88553 6.91846 7.04661 7.18829 7.32878 7.45379 7.50003 7.73883 7.97980 8.15706 8.23335 8.37551 8.44645 9.33858 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015098 B = 0.003725 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.106075 B = 7514.225217 C = 8605.487845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.529 5.529 3 C 0.020 3.980 4 C 0.060 3.940 5 O -0.386 6.386 6 C 0.068 3.932 7 C 0.039 3.961 8 H 0.061 0.939 9 C 0.137 3.863 10 N -0.732 5.732 11 C 0.300 3.700 12 C -0.310 4.310 13 C 0.146 3.854 14 C -0.401 4.401 15 H 0.097 0.903 16 C 0.065 3.935 17 N -0.726 5.726 18 Si 0.929 3.071 19 H -0.256 1.256 20 H -0.271 1.271 21 H -0.254 1.254 22 C -0.174 4.174 23 C -0.035 4.035 24 C -0.168 4.168 25 N 0.037 4.963 26 O -0.282 6.282 27 O -0.278 6.278 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.023 0.977 31 H 0.087 0.913 32 H 0.039 0.961 33 H 0.063 0.937 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.100 0.900 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.410 0.590 40 H 0.113 0.887 41 H 0.301 0.699 42 H 0.131 0.869 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.071 8.392 -6.473 10.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.254 5.254 3 C -0.108 4.108 4 C -0.017 4.017 5 O -0.304 6.304 6 C -0.009 4.009 7 C -0.070 4.070 8 H 0.079 0.921 9 C 0.012 3.988 10 N -0.369 5.369 11 C 0.193 3.807 12 C -0.336 4.336 13 C 0.141 3.859 14 C -0.426 4.426 15 H 0.115 0.885 16 C -0.165 4.165 17 N -0.345 5.345 18 Si 0.751 3.249 19 H -0.180 1.180 20 H -0.195 1.195 21 H -0.178 1.178 22 C -0.195 4.195 23 C -0.056 4.056 24 C -0.268 4.268 25 N 0.477 4.523 26 O -0.450 6.450 27 O -0.444 6.444 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.105 0.895 32 H 0.057 0.943 33 H 0.081 0.919 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.118 0.882 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.251 0.749 40 H 0.131 0.869 41 H 0.114 0.886 42 H 0.148 0.852 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -1.806 7.924 -6.467 10.387 hybrid contribution -0.461 0.160 -0.313 0.580 sum -2.267 8.085 -6.781 10.793 Atomic orbital electron populations 1.22403 0.86397 1.03546 0.99762 1.62085 1.08683 1.12873 1.41786 1.22789 0.96461 0.90020 1.01505 1.22698 0.92325 0.96298 0.90378 1.87961 1.70052 1.23961 1.48447 1.22717 0.91413 0.83693 1.03088 1.22609 0.96614 0.94823 0.92989 0.92081 1.21213 0.99727 0.90654 0.87244 1.44872 1.66885 1.08487 1.16636 1.17080 0.89845 0.83535 0.90220 1.20321 1.20857 0.95616 0.96833 1.17574 0.85567 0.90791 0.91949 1.21220 1.25030 0.90017 1.06376 0.88484 1.27756 0.93404 0.99475 0.95884 1.69094 1.20879 1.16931 1.27595 0.85989 0.80768 0.77755 0.80390 1.17989 1.19499 1.17813 1.21053 1.07078 0.99592 0.91775 1.19896 0.96512 0.89567 0.99581 1.19388 1.30195 0.91994 0.85197 1.50185 0.97999 1.02345 1.01801 1.96133 1.29687 1.78211 1.40975 1.96082 1.66353 0.98893 1.83064 0.90213 0.91316 0.95843 0.89482 0.94267 0.91902 0.88561 0.91946 0.88187 0.91386 0.92021 0.74875 0.86918 0.88570 0.85159 0.87091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.02 60.06 0.54 0.87 16 2 N -0.53 -7.10 4.21 -234.57 -0.99 -8.09 16 3 C 0.02 0.23 5.65 -3.71 -0.02 0.21 16 4 C 0.06 0.70 7.01 37.21 0.26 0.96 16 5 O -0.39 -5.27 10.83 -35.23 -0.38 -5.65 16 6 C 0.07 0.93 6.20 37.21 0.23 1.16 16 7 C 0.04 0.51 2.24 -67.60 -0.15 0.36 16 8 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 9 C 0.14 2.02 4.15 -4.04 -0.02 2.00 16 10 N -0.73 -13.78 4.98 -58.67 -0.29 -14.07 16 11 C 0.30 6.55 6.60 -83.84 -0.55 6.00 16 12 C -0.31 -6.61 9.06 -38.51 -0.35 -6.96 16 13 C 0.15 3.29 5.58 -106.83 -0.60 2.70 16 14 C -0.40 -8.49 9.30 -35.45 -0.33 -8.82 16 15 H 0.10 1.90 7.96 -52.49 -0.42 1.48 16 16 C 0.07 1.29 5.40 -15.19 -0.08 1.21 16 17 N -0.73 -14.97 11.00 55.98 0.62 -14.35 16 18 Si 0.93 14.46 29.66 -169.99 -5.04 9.42 16 19 H -0.26 -3.96 7.11 56.52 0.40 -3.56 16 20 H -0.27 -4.12 7.11 56.52 0.40 -3.72 16 21 H -0.25 -3.96 7.11 56.52 0.40 -3.56 16 22 C -0.17 -3.98 8.69 -39.03 -0.34 -4.32 16 23 C -0.04 -0.82 9.61 -40.05 -0.38 -1.21 16 24 C -0.17 -4.03 6.59 -79.32 -0.52 -4.55 16 25 N 0.04 0.93 4.75 34.27 0.16 1.09 16 26 O -0.28 -7.47 19.70 -31.57 -0.62 -8.09 16 27 O -0.28 -6.97 17.48 -31.57 -0.55 -7.52 16 28 H 0.08 1.13 6.72 -51.92 -0.35 0.78 16 29 H 0.07 0.78 8.05 -51.93 -0.42 0.37 16 30 H 0.02 0.25 8.12 -51.93 -0.42 -0.17 16 31 H 0.09 0.88 8.09 -51.93 -0.42 0.46 16 32 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.98 7.17 -51.93 -0.37 0.61 16 36 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.07 0.96 7.43 -51.93 -0.39 0.57 16 38 H 0.06 0.89 6.77 -51.93 -0.35 0.54 16 39 H 0.41 8.31 4.93 -40.82 -0.20 8.11 16 40 H 0.11 2.17 6.60 -52.49 -0.35 1.82 16 41 H 0.30 5.48 8.27 -40.82 -0.34 5.14 16 42 H 0.13 2.95 6.26 -52.49 -0.33 2.62 16 43 H 0.11 2.48 8.03 -52.49 -0.42 2.06 16 LS Contribution 354.11 15.07 5.34 5.34 Total: -1.00 -27.11 354.11 -9.75 -36.86 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -5.68 Total: 15.47 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: -2.31 Total: -10.40 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: -0.50 Total: -35.42 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -1.56 Total: -21.26 kcal Atomic # 14 Polarization: 14.46 SS G_CDS: -5.04 Total: 9.42 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -27.11 -9.75 -36.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169660207.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.639 kcal (2) G-P(sol) polarization free energy of solvation -27.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds