Wall clock time and date at job start Tue Mar 31 2020 13:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.47015 * 111.03521 * 2 1 4 4 C 1.53099 * 109.29339 * 177.65559 * 3 2 1 5 5 O 1.43018 * 109.26206 * 56.82345 * 4 3 2 6 6 C 1.43011 * 113.73599 * 301.33078 * 5 4 3 7 7 C 1.47012 * 110.99984 * 236.34286 * 2 1 3 8 8 H 1.09001 * 109.50820 * 62.40877 * 7 2 1 9 9 C 1.52999 * 109.50879 * 302.32438 * 7 2 1 10 10 N 1.46498 * 109.47137 * 304.41320 * 9 7 2 11 11 C 1.39672 * 120.00242 * 184.58980 * 10 9 7 12 12 C 1.38171 * 119.98988 * 6.66283 * 11 10 9 13 13 C 1.41132 * 119.50628 * 179.97438 * 12 11 10 14 14 C 1.40351 * 120.25290 * 179.97438 * 13 12 11 15 15 H 1.08002 * 120.00327 * 331.46830 * 14 13 12 16 16 C 1.46527 * 120.00328 * 151.47529 * 14 13 12 17 17 N 1.29520 * 119.99608 * 348.71734 * 16 14 13 18 18 Si 1.86791 * 120.00344 * 168.72089 * 16 14 13 19 19 H 1.48501 * 109.47493 * 59.99794 * 18 16 14 20 20 H 1.48504 * 109.47497 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.47282 * 299.99936 * 18 16 14 22 22 C 1.41336 * 119.49557 * 0.02562 * 13 12 11 23 23 C 1.36495 * 119.96226 * 359.76505 * 22 13 12 24 24 C 1.38663 * 120.49805 * 0.48970 * 23 22 13 25 25 N 1.48016 * 119.74150 * 179.76364 * 24 23 22 26 26 O 1.31702 * 120.00157 * 38.34738 * 25 24 23 27 27 O 1.31696 * 120.00197 * 218.07189 * 25 24 23 28 28 H 1.09008 * 109.46882 * 189.64515 * 1 2 3 29 29 H 1.08996 * 109.46941 * 309.63718 * 1 2 3 30 30 H 1.08998 * 109.47514 * 69.64696 * 1 2 3 31 31 H 1.08999 * 109.50612 * 57.69295 * 3 2 1 32 32 H 1.09006 * 109.50715 * 297.60632 * 3 2 1 33 33 H 1.09004 * 109.50431 * 296.88739 * 4 3 2 34 34 H 1.09005 * 109.54259 * 176.78559 * 4 3 2 35 35 H 1.08992 * 109.51152 * 298.73580 * 6 5 4 36 36 H 1.09001 * 109.50299 * 178.60350 * 6 5 4 37 37 H 1.08998 * 109.47460 * 184.40817 * 9 7 2 38 38 H 1.09003 * 109.47441 * 64.40639 * 9 7 2 39 39 H 0.97000 * 120.00122 * 4.58334 * 10 9 7 40 40 H 1.08002 * 120.24894 * 0.02562 * 12 11 10 41 41 H 0.96998 * 120.00065 * 179.97438 * 17 16 14 42 42 H 1.07996 * 120.02214 * 179.97438 * 22 13 12 43 43 H 1.07997 * 119.75385 * 180.23182 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9967 1.3722 0.0000 4 6 3.5258 1.3261 0.0591 5 8 4.0176 0.5569 -1.0418 6 6 3.5250 -0.7854 -1.0718 7 6 1.9958 -0.7607 -1.1424 8 1 1.6820 -0.2856 -2.0719 9 6 1.4590 -2.1926 -1.0941 10 7 1.7928 -2.7958 0.1985 11 6 1.4895 -4.1373 0.4423 12 6 1.0022 -4.9316 -0.5778 13 6 0.6997 -6.2858 -0.3202 14 6 0.2033 -7.1067 -1.3448 15 1 -0.3707 -6.6758 -2.1518 16 6 0.4637 -8.5484 -1.3195 17 7 1.3255 -9.0363 -0.4847 18 14 -0.4470 -9.6828 -2.4913 19 1 -0.1503 -9.2892 -3.8921 20 1 -0.0064 -11.0831 -2.2673 21 1 -1.9080 -9.5778 -2.2465 22 6 0.8993 -6.8088 0.9775 23 6 1.3859 -6.0062 1.9686 24 6 1.6779 -4.6744 1.7158 25 7 2.1998 -3.8178 2.8042 26 8 3.0568 -4.3089 3.6754 27 8 1.8114 -2.5629 2.8984 28 1 -0.3633 -1.0132 0.1722 29 1 -0.3633 0.6556 0.7914 30 1 -0.3634 0.3574 -0.9635 31 1 1.6148 1.9090 0.8684 32 1 1.6829 1.8828 -0.9105 33 1 3.8401 0.8642 0.9951 34 1 3.9237 2.3393 0.0018 35 1 3.8392 -1.3087 -0.1688 36 1 3.9216 -1.2991 -1.9476 37 1 1.9107 -2.7772 -1.8954 38 1 0.3763 -2.1792 -1.2199 39 1 2.2245 -2.2637 0.8851 40 1 0.8547 -4.5195 -1.5651 41 1 1.4976 -9.9907 -0.4676 42 1 0.6702 -7.8438 1.1842 43 1 1.5406 -6.4103 2.9580 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169660207.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:21:52 Heat of formation + Delta-G solvation = -16.659064 kcal Electronic energy + Delta-G solvation = -27792.488032 eV Core-core repulsion = 23840.849526 eV Total energy + Delta-G solvation = -3951.638506 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.10901 -40.33725 -38.62367 -37.51882 -36.39306 -35.44649 -34.72731 -32.91086 -32.40757 -30.18823 -29.45557 -28.58461 -27.23382 -25.41030 -25.19191 -23.96378 -22.61908 -22.49310 -20.76951 -19.78087 -18.99260 -18.59645 -17.72816 -17.53204 -17.39827 -16.98314 -16.80603 -16.19306 -16.07657 -15.70869 -15.50235 -15.04428 -14.88299 -14.74610 -14.68642 -14.53283 -13.99974 -13.55653 -13.44415 -13.23165 -13.00456 -12.87957 -12.84888 -12.78892 -12.41095 -12.06724 -12.00492 -11.87992 -11.76091 -11.61198 -11.51107 -11.41369 -11.36459 -10.95813 -10.61839 -9.94063 -9.35198 -9.12043 -8.43867 -6.76780 -1.06345 0.72484 0.99266 1.09939 1.41524 1.54249 1.58251 2.09446 2.37316 2.45484 2.75591 2.87696 3.32995 3.64180 3.71508 3.91586 3.98377 4.05354 4.22833 4.26321 4.47040 4.51791 4.54065 4.57482 4.59902 4.62379 4.67039 4.67762 4.70591 4.82229 4.88672 4.90783 4.94989 5.04620 5.10232 5.47255 5.61985 5.69204 5.72729 5.89900 5.98604 6.03743 6.10256 6.32206 6.38989 6.41718 6.67761 6.81619 7.77797 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015098 B = 0.003725 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.106075 B = 7514.225217 C = 8605.487845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.555 5.555 3 C 0.024 3.976 4 C 0.056 3.944 5 O -0.394 6.394 6 C 0.069 3.931 7 C 0.048 3.952 8 H 0.083 0.917 9 C 0.133 3.867 10 N -0.725 5.725 11 C 0.291 3.709 12 C -0.309 4.309 13 C 0.107 3.893 14 C -0.374 4.374 15 H 0.121 0.879 16 C 0.029 3.971 17 N -0.742 5.742 18 Si 1.005 2.995 19 H -0.248 1.248 20 H -0.265 1.265 21 H -0.250 1.250 22 C -0.159 4.159 23 C -0.061 4.061 24 C -0.174 4.174 25 N 0.043 4.957 26 O -0.361 6.361 27 O -0.309 6.309 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.043 0.957 31 H 0.097 0.903 32 H 0.053 0.947 33 H 0.043 0.957 34 H 0.125 0.875 35 H 0.032 0.968 36 H 0.115 0.885 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.403 0.597 40 H 0.137 0.863 41 H 0.317 0.683 42 H 0.131 0.869 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.940 7.389 -10.718 13.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 N -0.282 5.282 3 C -0.103 4.103 4 C -0.021 4.021 5 O -0.313 6.313 6 C -0.008 4.008 7 C -0.061 4.061 8 H 0.101 0.899 9 C 0.009 3.991 10 N -0.358 5.358 11 C 0.182 3.818 12 C -0.336 4.336 13 C 0.102 3.898 14 C -0.399 4.399 15 H 0.139 0.861 16 C -0.201 4.201 17 N -0.362 5.362 18 Si 0.822 3.178 19 H -0.171 1.171 20 H -0.189 1.189 21 H -0.174 1.174 22 C -0.181 4.181 23 C -0.081 4.081 24 C -0.280 4.280 25 N 0.461 4.539 26 O -0.508 6.508 27 O -0.465 6.465 28 H 0.075 0.925 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.143 0.857 35 H 0.050 0.950 36 H 0.133 0.867 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.242 0.758 40 H 0.155 0.845 41 H 0.130 0.870 42 H 0.149 0.851 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.559 7.030 -10.540 13.159 hybrid contribution -0.068 0.101 0.582 0.595 sum -3.627 7.131 -9.958 12.774 Atomic orbital electron populations 1.22329 0.85867 1.02371 1.01055 1.62048 1.09395 1.14320 1.42397 1.22805 0.95843 0.89048 1.02644 1.22873 0.92981 0.97199 0.89042 1.87945 1.70480 1.23851 1.49018 1.22700 0.92076 0.83767 1.02297 1.22524 0.95913 0.93850 0.93840 0.89913 1.21479 1.00469 0.91715 0.85432 1.45039 1.65569 1.07338 1.17900 1.17238 0.90114 0.84925 0.89500 1.20457 1.20564 0.95042 0.97515 1.17910 0.87616 0.92001 0.92271 1.21916 1.21414 0.91114 1.05424 0.86075 1.28754 0.93833 1.00158 0.97371 1.69099 1.20799 1.18550 1.27726 0.84865 0.79221 0.75624 0.78082 1.17114 1.18855 1.17388 1.21160 1.05708 0.99133 0.92118 1.19958 0.98268 0.89988 0.99874 1.19825 1.29898 0.92392 0.85850 1.50184 0.98826 1.02362 1.02484 1.96086 1.32533 1.78694 1.43523 1.96016 1.67241 0.99732 1.83555 0.92483 0.90770 0.93847 0.88471 0.92837 0.93855 0.85735 0.94956 0.86709 0.90076 0.91089 0.75799 0.84500 0.86970 0.85114 0.87513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 9.02 127.69 1.15 1.89 16 2 N -0.56 -14.49 4.21 -896.05 -3.77 -18.26 16 3 C 0.02 0.51 5.65 86.31 0.49 1.00 16 4 C 0.06 1.25 7.01 72.02 0.50 1.76 16 5 O -0.39 -10.42 10.83 -148.98 -1.61 -12.04 16 6 C 0.07 1.84 6.20 72.02 0.45 2.29 16 7 C 0.05 1.18 2.24 44.93 0.10 1.28 16 8 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 9 C 0.13 3.74 4.15 86.38 0.36 4.10 16 10 N -0.73 -27.67 4.98 -339.55 -1.69 -29.36 16 11 C 0.29 12.90 6.60 38.18 0.25 13.15 16 12 C -0.31 -12.72 9.06 22.96 0.21 -12.51 16 13 C 0.11 4.65 5.58 -21.29 -0.12 4.53 16 14 C -0.37 -14.44 9.30 24.95 0.23 -14.20 16 15 H 0.12 4.10 7.96 -2.91 -0.02 4.08 16 16 C 0.03 1.01 5.40 87.20 0.47 1.48 16 17 N -0.74 -28.56 11.00 23.21 0.26 -28.31 16 18 Si 1.00 25.55 29.66 68.60 2.03 27.58 16 19 H -0.25 -6.05 7.11 99.48 0.71 -5.35 16 20 H -0.26 -6.51 7.11 99.48 0.71 -5.80 16 21 H -0.25 -6.27 7.11 99.48 0.71 -5.57 16 22 C -0.16 -7.29 8.69 22.62 0.20 -7.09 16 23 C -0.06 -2.95 9.61 21.96 0.21 -2.74 16 24 C -0.17 -8.79 6.59 36.78 0.24 -8.54 16 25 N 0.04 2.37 4.75 -45.50 -0.22 2.15 16 26 O -0.36 -21.05 19.70 3.51 0.07 -20.98 16 27 O -0.31 -16.65 17.48 3.52 0.06 -16.59 16 28 H 0.06 1.59 6.72 -2.38 -0.02 1.58 16 29 H 0.07 1.63 8.05 -2.39 -0.02 1.61 16 30 H 0.04 0.83 8.12 -2.39 -0.02 0.81 16 31 H 0.10 1.83 8.09 -2.39 -0.02 1.81 16 32 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.12 2.04 8.14 -2.38 -0.02 2.02 16 35 H 0.03 1.05 7.17 -2.39 -0.02 1.04 16 36 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 37 H 0.08 2.08 7.43 -2.39 -0.02 2.06 16 38 H 0.07 1.90 6.77 -2.39 -0.02 1.88 16 39 H 0.40 17.06 4.93 -92.71 -0.46 16.60 16 40 H 0.14 4.85 6.60 -2.91 -0.02 4.83 16 41 H 0.32 10.55 8.27 -92.71 -0.77 9.78 16 42 H 0.13 5.85 6.26 -2.91 -0.02 5.84 16 43 H 0.11 5.13 8.03 -2.91 -0.02 5.10 16 Total: -1.00 -61.13 354.11 0.47 -60.66 By element: Atomic # 1 Polarization: 48.17 SS G_CDS: 0.59 Total: 48.76 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: 4.74 Total: -13.62 kcal Atomic # 7 Polarization: -68.36 SS G_CDS: -5.42 Total: -73.78 kcal Atomic # 8 Polarization: -48.12 SS G_CDS: -1.48 Total: -49.60 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: 2.03 Total: 27.58 kcal Total: -61.13 0.47 -60.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169660207.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.003 kcal (2) G-P(sol) polarization free energy of solvation -61.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds