Wall clock time and date at job start Tue Mar 31 2020 13:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45205 * 109.47087 * 2 1 4 4 C 1.34228 * 116.99643 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00211 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99801 * 179.97438 * 4 3 2 7 7 H 1.08999 * 110.02164 * 300.70383 * 6 4 3 8 8 C 1.53880 * 110.02963 * 62.09641 * 6 4 3 9 9 C 1.54262 * 106.60218 * 119.33150 * 8 6 4 10 10 C 1.54895 * 104.19577 * 23.60948 * 9 8 6 11 11 C 1.54267 * 110.07212 * 179.28306 * 6 4 3 12 12 H 1.08999 * 110.48891 * 335.76025 * 11 6 4 13 13 N 1.46501 * 110.48512 * 98.41145 * 11 6 4 14 14 C 1.38805 * 119.99681 * 204.99998 * 13 11 6 15 15 C 1.38625 * 120.21783 * 359.71730 * 14 13 11 16 16 C 1.38230 * 120.21697 * 179.74658 * 15 14 13 17 17 C 1.38790 * 120.65821 * 0.55893 * 16 15 14 18 18 C 1.37733 * 120.43196 * 359.70109 * 17 16 15 19 19 F 1.35102 * 120.11810 * 180.02562 * 18 17 16 20 20 C 1.41000 * 119.76406 * 0.02562 * 18 17 16 21 21 C 1.40996 * 120.31746 * 180.02562 * 20 18 17 22 22 H 1.07998 * 119.99962 * 216.74512 * 21 20 18 23 23 C 1.39913 * 120.00291 * 36.74818 * 21 20 18 24 24 N 1.30910 * 119.99680 * 19.68630 * 23 21 20 25 25 Si 1.86794 * 120.00247 * 199.69078 * 23 21 20 26 26 H 1.48502 * 109.46903 * 359.97438 * 25 23 21 27 27 H 1.48492 * 109.47563 * 119.99632 * 25 23 21 28 28 H 1.48497 * 109.47194 * 239.99915 * 25 23 21 29 29 H 1.08998 * 109.47182 * 300.00127 * 1 2 3 30 30 H 1.09006 * 109.47177 * 59.99538 * 1 2 3 31 31 H 1.08993 * 109.47059 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47072 * 240.00388 * 2 1 3 33 33 H 1.08997 * 109.47305 * 120.00385 * 2 1 3 34 34 H 1.08999 * 110.03278 * 238.61932 * 8 6 4 35 35 H 1.09004 * 110.03235 * 359.97438 * 8 6 4 36 36 H 1.09001 * 110.49086 * 142.28641 * 9 8 6 37 37 H 1.09000 * 110.49031 * 264.93483 * 9 8 6 38 38 H 1.08999 * 110.75718 * 80.36865 * 10 9 8 39 39 H 1.08998 * 110.75455 * 203.56089 * 10 9 8 40 40 H 0.96995 * 120.00124 * 24.99692 * 13 11 6 41 41 H 1.08002 * 119.89582 * 0.02760 * 15 14 13 42 42 H 1.07999 * 119.67509 * 180.30164 * 16 15 14 43 43 H 1.08002 * 119.78327 * 179.72366 * 17 16 15 44 44 H 0.97007 * 119.99774 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9207 2.9374 -0.0012 7 1 3.5799 3.4819 -0.8817 8 6 3.4975 3.6834 1.2764 9 6 4.7962 4.0462 2.0257 10 6 5.8815 4.0584 0.9207 11 6 5.4620 2.8728 0.0164 12 1 5.7994 1.9288 0.4442 13 7 5.9978 3.0451 -1.3361 14 6 7.2445 2.5276 -1.6598 15 6 7.9888 1.8522 -0.7051 16 6 9.2280 1.3324 -1.0288 17 6 9.7490 1.4879 -2.3058 18 6 9.0349 2.1588 -3.2737 19 9 9.5479 2.3060 -4.5149 20 6 7.7665 2.6914 -2.9647 21 6 7.0251 3.3798 -3.9468 22 1 6.4305 4.2383 -3.6714 23 6 7.0597 2.9508 -5.2781 24 7 7.4401 1.7310 -5.5630 25 14 6.5631 4.1185 -6.6489 26 1 6.1761 5.4288 -6.0670 27 1 7.7067 4.3070 -7.5771 28 1 5.4111 3.5478 -7.3922 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.9511 4.5898 1.0158 35 1 2.8750 3.0383 1.8966 36 1 4.7090 5.0305 2.4857 37 1 5.0262 3.2916 2.7779 38 1 5.8565 4.9958 0.3650 39 1 6.8700 3.8908 1.3484 40 1 5.4814 3.5206 -2.0055 41 1 7.5973 1.7278 0.2938 42 1 9.7984 0.8035 -0.2796 43 1 10.7207 1.0798 -2.5421 44 1 7.4644 1.4337 -6.4860 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170965241.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:05 Heat of formation + Delta-G solvation = -117.693700 kcal Electronic energy + Delta-G solvation = -27654.935092 eV Core-core repulsion = 23678.995433 eV Total energy + Delta-G solvation = -3975.939659 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -46.78112 -40.67862 -38.55730 -37.12226 -36.29653 -33.45977 -33.34882 -31.89612 -29.73187 -29.49385 -28.21358 -26.42318 -24.91629 -23.78516 -22.10659 -21.19849 -20.78843 -20.20333 -19.43478 -17.65147 -17.26572 -16.87465 -16.57621 -16.02004 -15.76138 -14.97166 -14.65107 -14.40854 -14.08504 -13.92245 -13.81675 -13.57504 -13.34844 -13.27407 -12.99610 -12.65304 -12.31832 -12.12795 -12.01970 -11.73136 -11.61693 -11.46169 -11.29099 -11.18483 -11.08380 -11.03843 -10.84519 -10.76120 -10.58984 -10.56303 -10.36245 -10.12524 -9.99891 -9.44336 -8.93295 -8.83446 -7.07079 -6.65491 -6.31036 -4.16419 2.33838 2.65092 2.82887 2.99086 3.16484 3.20643 3.22117 4.07092 4.25678 4.40702 4.60377 4.76254 4.78611 4.82402 4.87484 5.03972 5.14467 5.38010 5.40519 5.50135 5.51817 5.59744 5.60401 5.63651 5.69229 5.78815 5.86029 5.96330 6.11596 6.16914 6.23924 6.27890 6.43915 6.49475 6.53084 6.62682 7.06581 7.28174 7.42835 7.43655 7.70526 7.86648 7.91712 8.15627 8.41165 8.60124 8.77894 8.97955 9.07530 10.39548 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011477 B = 0.004280 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.972823 B = 6540.336540 C = 7439.882167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.361 6.361 4 C 0.467 3.533 5 O -0.492 6.492 6 C -0.095 4.095 7 H 0.114 0.886 8 C -0.108 4.108 9 C -0.125 4.125 10 C -0.139 4.139 11 C 0.168 3.832 12 H 0.099 0.901 13 N -0.734 5.734 14 C 0.154 3.846 15 C -0.188 4.188 16 C -0.161 4.161 17 C -0.182 4.182 18 C 0.062 3.938 19 F -0.144 7.144 20 C 0.041 3.959 21 C -0.478 4.478 22 H 0.075 0.925 23 C 0.081 3.919 24 N -0.787 5.787 25 Si 0.901 3.099 26 H -0.263 1.263 27 H -0.274 1.274 28 H -0.279 1.279 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.396 0.604 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.384 2.009 11.957 16.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.278 6.278 4 C 0.309 3.691 5 O -0.378 6.378 6 C -0.115 4.115 7 H 0.131 0.869 8 C -0.146 4.146 9 C -0.163 4.163 10 C -0.178 4.178 11 C 0.060 3.940 12 H 0.117 0.883 13 N -0.366 5.366 14 C 0.054 3.946 15 C -0.211 4.211 16 C -0.181 4.181 17 C -0.203 4.203 18 C 0.040 3.960 19 F -0.122 7.122 20 C 0.035 3.965 21 C -0.509 4.509 22 H 0.093 0.907 23 C -0.137 4.137 24 N -0.412 5.412 25 Si 0.726 3.274 26 H -0.187 1.187 27 H -0.199 1.199 28 H -0.205 1.205 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.232 0.768 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.160 1.456 11.864 16.353 hybrid contribution -0.349 0.258 -1.343 1.411 sum -11.509 1.714 10.521 15.688 Atomic orbital electron populations 1.21792 0.92778 1.02828 1.03396 1.23002 0.95182 0.80543 1.02691 1.86491 1.24830 1.32115 1.84406 1.23613 0.80362 0.92767 0.72395 1.90710 1.60136 1.42840 1.44106 1.22024 0.97401 0.90053 1.02025 0.86855 1.22041 0.98304 1.00114 0.94154 1.22351 0.94430 1.01611 0.97899 1.23035 0.98753 0.99591 0.96430 1.21497 0.87930 0.99272 0.85305 0.88348 1.43955 1.18653 1.63941 1.10075 1.17574 0.85534 0.97763 0.93769 1.20097 0.96601 1.06755 0.97681 1.19946 0.96805 1.05909 0.95421 1.20421 1.00145 1.05452 0.94244 1.17456 0.92796 1.06237 0.79523 1.91313 1.86263 1.94089 1.40552 1.17060 0.91383 0.96895 0.91121 1.18896 1.27468 1.12750 0.91753 0.90656 1.25652 0.93724 0.94634 0.99722 1.69817 1.34864 1.15545 1.21008 0.86382 0.78550 0.81437 0.81006 1.18695 1.19882 1.20455 0.91619 0.91468 0.90373 0.91136 0.91379 0.90291 0.91198 0.91137 0.91464 0.90738 0.90717 0.76758 0.88640 0.88618 0.88585 0.91146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.29 37.16 0.38 -0.81 16 2 C 0.06 0.67 6.19 37.16 0.23 0.90 16 3 O -0.36 -4.82 10.17 -39.25 -0.40 -5.22 16 4 C 0.47 7.18 7.01 36.01 0.25 7.43 16 5 O -0.49 -9.30 15.16 -18.75 -0.28 -9.59 16 6 C -0.10 -1.28 3.14 -90.65 -0.28 -1.56 16 7 H 0.11 1.45 7.73 -51.93 -0.40 1.04 16 8 C -0.11 -1.10 6.43 -25.61 -0.16 -1.26 16 9 C -0.12 -1.27 6.83 -25.07 -0.17 -1.44 16 10 C -0.14 -1.82 6.58 -24.73 -0.16 -1.98 16 11 C 0.17 2.67 2.23 -66.27 -0.15 2.52 16 12 H 0.10 1.78 5.16 -51.93 -0.27 1.51 16 13 N -0.73 -14.47 5.24 -50.16 -0.26 -14.73 16 14 C 0.15 3.63 6.68 -83.32 -0.56 3.07 16 15 C -0.19 -4.21 9.20 -39.44 -0.36 -4.57 16 16 C -0.16 -3.62 10.03 -39.38 -0.40 -4.01 16 17 C -0.18 -4.44 9.99 -39.56 -0.40 -4.84 16 18 C 0.06 1.68 6.68 -38.72 -0.26 1.42 16 19 F -0.14 -4.07 14.27 2.25 0.03 -4.04 16 20 C 0.04 1.09 5.41 -106.57 -0.58 0.51 16 21 C -0.48 -12.66 8.12 -37.91 -0.31 -12.97 16 22 H 0.08 1.87 7.15 -52.49 -0.38 1.50 16 23 C 0.08 2.13 4.51 -17.32 -0.08 2.05 16 24 N -0.79 -21.90 11.12 55.55 0.62 -21.28 16 25 Si 0.90 19.71 29.60 -169.99 -5.03 14.68 16 26 H -0.26 -5.58 7.11 56.52 0.40 -5.18 16 27 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 28 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 33 H 0.07 0.74 8.13 -51.93 -0.42 0.31 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.68 7.64 -51.93 -0.40 0.28 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.40 7.76 6.81 -40.82 -0.28 7.48 16 41 H 0.10 1.92 6.19 -52.49 -0.32 1.59 16 42 H 0.10 1.87 8.06 -52.49 -0.42 1.44 16 43 H 0.10 2.14 8.06 -52.49 -0.42 1.72 16 44 H 0.28 7.16 8.30 -40.82 -0.34 6.82 16 LS Contribution 362.68 15.07 5.47 5.47 Total: -1.00 -31.33 362.68 -9.11 -40.44 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -6.25 Total: 9.81 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: -3.00 Total: -15.54 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.35 Total: -36.01 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.68 Total: -14.80 kcal Atomic # 9 Polarization: -4.07 SS G_CDS: 0.03 Total: -4.04 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.68 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.33 -9.11 -40.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170965241.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.254 kcal (2) G-P(sol) polarization free energy of solvation -31.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds