Wall clock time and date at job start Tue Mar 31 2020 13:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45205 * 109.47087 * 2 1 4 4 C 1.34228 * 116.99643 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00211 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99801 * 179.97438 * 4 3 2 7 7 H 1.08999 * 110.02164 * 300.70383 * 6 4 3 8 8 C 1.53880 * 110.02963 * 62.09641 * 6 4 3 9 9 C 1.54262 * 106.60218 * 119.33150 * 8 6 4 10 10 C 1.54895 * 104.19577 * 23.60948 * 9 8 6 11 11 C 1.54267 * 110.07212 * 179.28306 * 6 4 3 12 12 H 1.08999 * 110.48891 * 335.76025 * 11 6 4 13 13 N 1.46501 * 110.48512 * 98.41145 * 11 6 4 14 14 C 1.38805 * 119.99681 * 204.99998 * 13 11 6 15 15 C 1.38625 * 120.21783 * 359.71730 * 14 13 11 16 16 C 1.38230 * 120.21697 * 179.74658 * 15 14 13 17 17 C 1.38790 * 120.65821 * 0.55893 * 16 15 14 18 18 C 1.37733 * 120.43196 * 359.70109 * 17 16 15 19 19 F 1.35102 * 120.11810 * 180.02562 * 18 17 16 20 20 C 1.41000 * 119.76406 * 0.02562 * 18 17 16 21 21 C 1.40996 * 120.31746 * 180.02562 * 20 18 17 22 22 H 1.07998 * 119.99962 * 216.74512 * 21 20 18 23 23 C 1.39913 * 120.00291 * 36.74818 * 21 20 18 24 24 N 1.30910 * 119.99680 * 19.68630 * 23 21 20 25 25 Si 1.86794 * 120.00247 * 199.69078 * 23 21 20 26 26 H 1.48502 * 109.46903 * 359.97438 * 25 23 21 27 27 H 1.48492 * 109.47563 * 119.99632 * 25 23 21 28 28 H 1.48497 * 109.47194 * 239.99915 * 25 23 21 29 29 H 1.08998 * 109.47182 * 300.00127 * 1 2 3 30 30 H 1.09006 * 109.47177 * 59.99538 * 1 2 3 31 31 H 1.08993 * 109.47059 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47072 * 240.00388 * 2 1 3 33 33 H 1.08997 * 109.47305 * 120.00385 * 2 1 3 34 34 H 1.08999 * 110.03278 * 238.61932 * 8 6 4 35 35 H 1.09004 * 110.03235 * 359.97438 * 8 6 4 36 36 H 1.09001 * 110.49086 * 142.28641 * 9 8 6 37 37 H 1.09000 * 110.49031 * 264.93483 * 9 8 6 38 38 H 1.08999 * 110.75718 * 80.36865 * 10 9 8 39 39 H 1.08998 * 110.75455 * 203.56089 * 10 9 8 40 40 H 0.96995 * 120.00124 * 24.99692 * 13 11 6 41 41 H 1.08002 * 119.89582 * 0.02760 * 15 14 13 42 42 H 1.07999 * 119.67509 * 180.30164 * 16 15 14 43 43 H 1.08002 * 119.78327 * 179.72366 * 17 16 15 44 44 H 0.97007 * 119.99774 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9207 2.9374 -0.0012 7 1 3.5799 3.4819 -0.8817 8 6 3.4975 3.6834 1.2764 9 6 4.7962 4.0462 2.0257 10 6 5.8815 4.0584 0.9207 11 6 5.4620 2.8728 0.0164 12 1 5.7994 1.9288 0.4442 13 7 5.9978 3.0451 -1.3361 14 6 7.2445 2.5276 -1.6598 15 6 7.9888 1.8522 -0.7051 16 6 9.2280 1.3324 -1.0288 17 6 9.7490 1.4879 -2.3058 18 6 9.0349 2.1588 -3.2737 19 9 9.5479 2.3060 -4.5149 20 6 7.7665 2.6914 -2.9647 21 6 7.0251 3.3798 -3.9468 22 1 6.4305 4.2383 -3.6714 23 6 7.0597 2.9508 -5.2781 24 7 7.4401 1.7310 -5.5630 25 14 6.5631 4.1185 -6.6489 26 1 6.1761 5.4288 -6.0670 27 1 7.7067 4.3070 -7.5771 28 1 5.4111 3.5478 -7.3922 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 2.9511 4.5898 1.0158 35 1 2.8750 3.0383 1.8966 36 1 4.7090 5.0305 2.4857 37 1 5.0262 3.2916 2.7779 38 1 5.8565 4.9958 0.3650 39 1 6.8700 3.8908 1.3484 40 1 5.4814 3.5206 -2.0055 41 1 7.5973 1.7278 0.2938 42 1 9.7984 0.8035 -0.2796 43 1 10.7207 1.0798 -2.5421 44 1 7.4644 1.4337 -6.4860 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170965241.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:04 Heat of formation + Delta-G solvation = -134.288476 kcal Electronic energy + Delta-G solvation = -27655.654695 eV Core-core repulsion = 23678.995433 eV Total energy + Delta-G solvation = -3976.659262 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.87520 -41.86245 -39.98265 -38.60437 -37.50646 -35.38088 -34.90430 -32.74232 -31.58106 -30.53418 -29.80289 -27.87115 -26.77970 -24.74355 -23.30445 -22.85150 -22.20416 -21.47571 -20.77362 -19.30224 -18.79890 -18.24744 -17.79610 -17.51352 -17.13063 -16.74674 -16.01588 -15.99014 -15.65810 -15.59744 -15.31958 -15.07309 -14.72864 -14.46026 -14.27909 -13.85249 -13.66241 -13.39910 -13.31634 -13.09592 -13.00477 -12.96183 -12.83484 -12.60561 -12.53794 -12.31430 -12.25176 -12.02308 -11.84583 -11.72447 -11.68358 -11.55625 -11.34214 -11.19990 -10.85212 -10.53474 -9.04323 -8.59191 -8.08567 -6.15186 0.95310 1.08682 1.13721 1.36916 1.46182 1.51029 1.60381 2.24727 2.76940 2.89207 3.31445 3.58032 3.64254 3.78688 3.96900 4.06196 4.11645 4.25816 4.31654 4.37151 4.37763 4.45129 4.51136 4.56364 4.66772 4.74818 4.80204 4.83619 4.90500 5.03276 5.10119 5.12033 5.18029 5.22131 5.29234 5.34520 5.41481 5.46894 5.58042 5.66523 5.80059 6.03057 6.23805 6.51256 6.69183 6.75722 6.94392 7.14191 7.22289 8.47754 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011477 B = 0.004280 C = 0.003763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2438.972823 B = 6540.336540 C = 7439.882167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.050 3.950 3 O -0.356 6.356 4 C 0.466 3.534 5 O -0.536 6.536 6 C -0.093 4.093 7 H 0.121 0.879 8 C -0.099 4.099 9 C -0.115 4.115 10 C -0.133 4.133 11 C 0.160 3.840 12 H 0.077 0.923 13 N -0.731 5.731 14 C 0.160 3.840 15 C -0.198 4.198 16 C -0.146 4.146 17 C -0.201 4.201 18 C 0.025 3.975 19 F -0.160 7.160 20 C 0.003 3.997 21 C -0.500 4.500 22 H 0.082 0.918 23 C 0.035 3.965 24 N -0.833 5.833 25 Si 0.971 3.029 26 H -0.250 1.250 27 H -0.278 1.278 28 H -0.270 1.270 29 H 0.076 0.924 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.054 0.946 33 H 0.071 0.929 34 H 0.104 0.896 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.395 0.605 41 H 0.119 0.881 42 H 0.132 0.868 43 H 0.110 0.890 44 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.394 3.333 13.998 19.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.023 4.023 3 O -0.273 6.273 4 C 0.310 3.690 5 O -0.425 6.425 6 C -0.113 4.113 7 H 0.139 0.861 8 C -0.137 4.137 9 C -0.153 4.153 10 C -0.172 4.172 11 C 0.054 3.946 12 H 0.095 0.905 13 N -0.362 5.362 14 C 0.057 3.943 15 C -0.221 4.221 16 C -0.166 4.166 17 C -0.221 4.221 18 C 0.004 3.996 19 F -0.139 7.139 20 C -0.003 4.003 21 C -0.530 4.530 22 H 0.100 0.900 23 C -0.179 4.179 24 N -0.460 5.460 25 Si 0.793 3.207 26 H -0.174 1.174 27 H -0.203 1.203 28 H -0.195 1.195 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.117 0.883 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.122 0.878 35 H 0.097 0.903 36 H 0.115 0.885 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.231 0.769 41 H 0.137 0.863 42 H 0.149 0.851 43 H 0.128 0.872 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.225 2.805 13.950 19.426 hybrid contribution 0.245 -0.248 -1.806 1.839 sum -12.979 2.557 12.144 17.958 Atomic orbital electron populations 1.21805 0.89837 1.04382 1.03921 1.23286 0.97460 0.79472 1.02112 1.86496 1.23635 1.33391 1.83740 1.24047 0.80740 0.93054 0.71114 1.90694 1.61165 1.44319 1.46355 1.22079 0.95370 0.89459 1.04390 0.86090 1.22080 0.98619 1.00758 0.92257 1.22338 0.92818 1.03317 0.96830 1.22945 0.99596 0.97930 0.96732 1.21703 0.89795 0.99620 0.83521 0.90506 1.44123 1.17351 1.62913 1.11766 1.17804 0.86838 0.96717 0.92934 1.20419 0.96657 1.06481 0.98591 1.20410 0.96736 1.04199 0.95241 1.20660 1.00899 1.05946 0.94625 1.17959 0.93942 1.08147 0.79601 1.91249 1.86523 1.94406 1.41713 1.17433 0.91791 0.98288 0.92744 1.19149 1.28158 1.13217 0.92508 0.89968 1.26521 0.93502 0.95850 1.02040 1.69907 1.37219 1.17454 1.21428 0.85321 0.78075 0.79624 0.77678 1.17356 1.20330 1.19521 0.90459 0.91503 0.88323 0.92729 0.91103 0.87781 0.90330 0.88482 0.91091 0.90647 0.91359 0.76915 0.86272 0.85052 0.87151 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 10.29 71.98 0.74 -1.22 16 2 C 0.05 1.09 6.19 71.98 0.45 1.53 16 3 O -0.36 -9.06 10.17 -51.40 -0.52 -9.58 16 4 C 0.47 14.02 7.01 71.24 0.50 14.52 16 5 O -0.54 -20.49 15.16 21.97 0.33 -20.16 16 6 C -0.09 -2.34 3.14 -10.81 -0.03 -2.38 16 7 H 0.12 2.88 7.73 -2.39 -0.02 2.86 16 8 C -0.10 -1.67 6.43 31.32 0.20 -1.47 16 9 C -0.12 -1.92 6.83 31.67 0.22 -1.70 16 10 C -0.13 -3.19 6.58 31.89 0.21 -2.98 16 11 C 0.16 4.92 2.23 46.07 0.10 5.03 16 12 H 0.08 2.74 5.16 -2.39 -0.01 2.73 16 13 N -0.73 -28.79 5.24 -312.61 -1.64 -30.42 16 14 C 0.16 7.61 6.68 38.93 0.26 7.87 16 15 C -0.20 -8.74 9.20 22.36 0.21 -8.54 16 16 C -0.15 -6.44 10.03 22.40 0.22 -6.21 16 17 C -0.20 -9.91 9.99 22.28 0.22 -9.69 16 18 C 0.03 1.43 6.68 22.83 0.15 1.58 16 19 F -0.16 -9.50 14.27 44.97 0.64 -8.86 16 20 C 0.00 0.16 5.41 -21.12 -0.11 0.04 16 21 C -0.50 -27.17 8.12 23.35 0.19 -26.98 16 22 H 0.08 4.16 7.15 -2.91 -0.02 4.14 16 23 C 0.03 1.86 4.51 85.24 0.38 2.24 16 24 N -0.83 -48.19 11.12 21.83 0.24 -47.95 16 25 Si 0.97 41.26 29.60 68.60 2.03 43.29 16 26 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 27 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 28 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 29 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.05 1.35 8.13 -2.39 -0.02 1.33 16 33 H 0.07 1.49 8.13 -2.39 -0.02 1.47 16 34 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.08 1.24 7.64 -2.39 -0.02 1.22 16 36 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.40 15.55 6.81 -92.71 -0.63 14.92 16 41 H 0.12 4.64 6.19 -2.91 -0.02 4.62 16 42 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 43 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 44 H 0.28 14.99 8.30 -92.70 -0.77 14.22 16 Total: -1.00 -71.09 362.68 5.39 -65.70 By element: Atomic # 1 Polarization: 35.94 SS G_CDS: 0.39 Total: 36.34 kcal Atomic # 6 Polarization: -32.26 SS G_CDS: 3.91 Total: -28.35 kcal Atomic # 7 Polarization: -76.98 SS G_CDS: -1.39 Total: -78.37 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -0.19 Total: -29.74 kcal Atomic # 9 Polarization: -9.50 SS G_CDS: 0.64 Total: -8.86 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Total: -71.09 5.39 -65.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170965241.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.588 kcal (2) G-P(sol) polarization free energy of solvation -71.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds