Wall clock time and date at job start Tue Mar 31 2020 13:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45197 * 109.47295 * 2 1 4 4 C 1.34228 * 117.00065 * 179.97438 * 3 2 1 5 5 O 1.20820 * 120.00222 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99669 * 179.97438 * 4 3 2 7 7 N 1.46907 * 109.46702 * 179.97438 * 6 4 3 8 8 C 1.46900 * 110.99891 * 283.58147 * 7 6 4 9 9 C 1.50703 * 109.46761 * 170.00469 * 8 7 6 10 10 H 1.07997 * 119.99993 * 119.73034 * 9 8 7 11 11 C 1.37881 * 119.99557 * 299.99585 * 9 8 7 12 12 N 1.31512 * 120.00300 * 359.72931 * 11 9 8 13 13 Si 1.86796 * 119.99560 * 179.72951 * 11 9 8 14 14 H 1.48500 * 109.47667 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47330 * 120.00066 * 13 11 9 16 16 H 1.48500 * 109.47100 * 239.99832 * 13 11 9 17 17 C 1.46900 * 110.99642 * 159.62936 * 7 6 4 18 18 H 1.09004 * 110.72653 * 171.58228 * 17 7 6 19 19 C 1.54344 * 110.82830 * 47.95360 * 17 7 6 20 20 C 1.51373 * 105.17133 * 215.43242 * 19 17 7 21 21 C 1.38512 * 130.37421 * 197.18771 * 20 19 17 22 22 C 1.38115 * 120.26962 * 179.97438 * 21 20 19 23 23 C 1.38208 * 119.96194 * 0.02562 * 22 21 20 24 24 C 1.38328 * 119.90882 * 0.02562 * 23 22 21 25 25 F 1.35103 * 119.92330 * 179.97438 * 24 23 22 26 26 C 1.38177 * 109.75710 * 17.18931 * 20 19 17 27 27 C 1.51361 * 109.77435 * 359.97438 * 26 20 19 28 28 H 1.09003 * 109.47213 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47142 * 300.00684 * 1 2 3 30 30 H 1.09006 * 109.46817 * 60.00687 * 1 2 3 31 31 H 1.08998 * 109.47142 * 239.99316 * 2 1 3 32 32 H 1.09006 * 109.46817 * 119.99312 * 2 1 3 33 33 H 1.08994 * 109.47345 * 60.00345 * 6 4 3 34 34 H 1.09000 * 109.47778 * 299.99736 * 6 4 3 35 35 H 1.08995 * 109.46912 * 50.00143 * 8 7 6 36 36 H 1.09000 * 109.47051 * 290.00179 * 8 7 6 37 37 H 0.96994 * 119.99962 * 180.02562 * 12 11 9 38 38 H 1.09007 * 110.30110 * 334.35742 * 19 17 7 39 39 H 1.08998 * 110.30156 * 96.50340 * 19 17 7 40 40 H 1.08006 * 119.86536 * 0.02562 * 21 20 19 41 41 H 1.08004 * 120.01789 * 180.02562 * 22 21 20 42 42 H 1.08001 * 120.04871 * 179.97438 * 23 22 21 43 43 H 1.08998 * 110.30500 * 223.89571 * 27 26 20 44 44 H 1.09000 * 110.38327 * 101.77835 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 7 5.3878 2.8604 0.0014 8 6 5.8954 2.5123 1.3352 9 6 7.3677 2.2026 1.2472 10 1 8.0776 2.7902 1.8102 11 6 7.8086 1.1726 0.4436 12 7 6.9440 0.4569 -0.2419 13 14 9.6341 0.7936 0.3287 14 1 10.3908 1.7364 1.1911 15 1 9.8802 -0.5985 0.7832 16 1 10.0826 0.9411 -1.0793 17 6 5.9812 4.1164 -0.4765 18 1 7.0620 4.1107 -0.3352 19 6 5.3378 5.3300 0.2274 20 6 5.2908 6.4185 -0.8235 21 6 5.1184 7.7864 -0.6913 22 6 5.1099 8.5982 -1.8087 23 6 5.2734 8.0454 -3.0648 24 6 5.4447 6.6795 -3.2002 25 9 5.6040 6.1387 -4.4280 26 6 5.4544 5.8636 -2.0783 27 6 5.6233 4.3643 -1.9572 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.5844 3.4700 0.8895 34 1 3.5853 3.4690 -0.8905 35 1 5.3621 1.6388 1.7102 36 1 5.7405 3.3515 2.0133 37 1 7.2542 -0.2679 -0.8069 38 1 4.3301 5.0830 0.5615 39 1 5.9503 5.6458 1.0720 40 1 4.9909 8.2202 0.2896 41 1 4.9755 9.6645 -1.7009 42 1 5.2665 8.6788 -3.9395 43 1 6.4303 4.0210 -2.6044 44 1 4.6932 3.8557 -2.2111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171809736.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:25 Heat of formation + Delta-G solvation = -84.450894 kcal Electronic energy + Delta-G solvation = -27774.918145 eV Core-core repulsion = 23800.420003 eV Total energy + Delta-G solvation = -3974.498142 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -48.68442 -40.14589 -39.45158 -37.19619 -35.61605 -33.71530 -32.11152 -31.41806 -30.80015 -28.35715 -28.07829 -27.04878 -25.15824 -22.87608 -22.48100 -21.48952 -21.13421 -20.61126 -18.84672 -17.28467 -16.84315 -16.41210 -16.22832 -15.88512 -15.57813 -15.47128 -15.42250 -14.56359 -14.36901 -14.11725 -14.00823 -13.73615 -13.22943 -12.90328 -12.75807 -12.64322 -12.53628 -12.41874 -12.02351 -11.91866 -11.65275 -11.51678 -11.22176 -11.18463 -10.94266 -10.87743 -10.84571 -10.62279 -10.50831 -10.26671 -9.95806 -9.55859 -9.34733 -9.00689 -8.53373 -8.42500 -8.29086 -6.97840 -5.70926 -3.91138 1.26629 1.30805 3.20429 3.22941 3.37975 3.47006 3.48901 3.66222 4.37645 4.56057 4.56999 4.71648 4.89514 5.13659 5.14910 5.19387 5.22745 5.34507 5.44848 5.49509 5.54480 5.62691 5.67865 5.73211 5.77879 5.91043 5.93409 5.95985 5.98554 6.08724 6.11843 6.16383 6.27923 6.31476 6.37046 6.53851 6.69596 6.90622 6.94294 7.02926 7.15503 7.35318 7.92428 8.15720 8.36795 8.55243 8.81703 9.14534 9.77290 11.27141 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.008292 B = 0.005305 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3375.816051 B = 5276.723055 C = 7511.926219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.064 3.936 3 O -0.381 6.381 4 C 0.432 3.568 5 O -0.424 6.424 6 C 0.059 3.941 7 N -0.475 5.475 8 C 0.196 3.804 9 C -0.550 4.550 10 H 0.051 0.949 11 C 0.089 3.911 12 N -0.809 5.809 13 Si 0.869 3.131 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.286 1.286 17 C 0.111 3.889 18 H 0.112 0.888 19 C -0.126 4.126 20 C -0.055 4.055 21 C -0.123 4.123 22 C -0.098 4.098 23 C -0.163 4.163 24 C 0.107 3.893 25 F -0.143 7.143 26 C -0.124 4.124 27 C -0.076 4.076 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.037 0.963 36 H -0.020 1.020 37 H 0.252 0.748 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.124 0.876 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.079 0.921 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.153 10.707 -2.425 14.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.010 4.010 3 O -0.300 6.300 4 C 0.270 3.730 5 O -0.303 6.303 6 C -0.070 4.070 7 N -0.199 5.199 8 C 0.073 3.927 9 C -0.588 4.588 10 H 0.070 0.930 11 C -0.121 4.121 12 N -0.441 5.441 13 Si 0.697 3.303 14 H -0.200 1.200 15 H -0.213 1.213 16 H -0.212 1.212 17 C 0.001 3.999 18 H 0.130 0.870 19 C -0.165 4.165 20 C -0.056 4.056 21 C -0.141 4.141 22 C -0.116 4.116 23 C -0.182 4.182 24 C 0.087 3.913 25 F -0.121 7.121 26 C -0.125 4.125 27 C -0.113 4.113 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.055 0.945 36 H -0.002 1.002 37 H 0.062 0.938 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.142 0.858 41 H 0.147 0.853 42 H 0.149 0.851 43 H 0.098 0.902 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -9.813 9.735 -2.911 14.126 hybrid contribution 0.826 0.204 0.021 0.851 sum -8.987 9.939 -2.890 13.708 Atomic orbital electron populations 1.21774 0.93557 1.02291 1.02997 1.22778 0.94386 0.81576 1.02248 1.86464 1.26460 1.31219 1.85901 1.23900 0.79743 0.93870 0.75519 1.90915 1.58640 1.41510 1.39216 1.21564 0.93593 0.89873 1.01952 1.62257 0.98766 1.27452 1.31402 1.19763 0.96617 0.93594 0.82741 1.20811 0.91267 1.17098 1.29650 0.93047 1.24991 0.95921 0.95847 0.95361 1.70249 1.31781 1.17281 1.24764 0.86940 0.87554 0.78122 0.77680 1.20030 1.21275 1.21178 1.22225 1.01167 0.85729 0.90763 0.87049 1.22085 1.02373 0.94574 0.97431 1.20592 0.96257 0.93759 0.94972 1.20710 1.02000 0.92396 0.98975 1.20802 0.99690 0.99715 0.91412 1.20953 1.05328 0.92817 0.99065 1.17388 1.03407 0.91357 0.79108 1.91474 1.93063 1.86587 1.40996 1.20845 1.01592 0.97736 0.92347 1.21176 1.02760 0.88222 0.99150 0.90867 0.91866 0.91860 0.91756 0.91791 0.92656 0.88910 0.94508 1.00181 0.93756 0.89853 0.90291 0.85816 0.85292 0.85078 0.90247 0.89841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.29 37.16 0.38 -1.20 16 2 C 0.06 0.95 6.19 37.16 0.23 1.18 16 3 O -0.38 -6.64 10.22 -39.25 -0.40 -7.04 16 4 C 0.43 8.83 7.62 36.01 0.27 9.11 16 5 O -0.42 -10.47 14.10 -18.75 -0.26 -10.73 16 6 C 0.06 1.11 4.10 -4.97 -0.02 1.09 16 7 N -0.48 -10.35 3.37 -227.83 -0.77 -11.12 16 8 C 0.20 4.78 4.46 -4.97 -0.02 4.76 16 9 C -0.55 -14.76 8.12 -34.44 -0.28 -15.04 16 10 H 0.05 1.38 7.81 -52.49 -0.41 0.97 16 11 C 0.09 2.44 5.39 -17.82 -0.10 2.34 16 12 N -0.81 -23.28 11.84 55.43 0.66 -22.62 16 13 Si 0.87 21.15 29.54 -169.99 -5.02 16.13 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 15 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 16 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 17 C 0.11 2.12 2.98 -66.31 -0.20 1.92 16 18 H 0.11 2.41 7.06 -51.93 -0.37 2.05 16 19 C -0.13 -1.97 5.56 -26.85 -0.15 -2.12 16 20 C -0.06 -0.81 6.14 -104.21 -0.64 -1.45 16 21 C -0.12 -1.49 10.04 -39.53 -0.40 -1.89 16 22 C -0.10 -1.07 10.04 -39.64 -0.40 -1.47 16 23 C -0.16 -1.98 10.02 -39.56 -0.40 -2.38 16 24 C 0.11 1.59 7.30 -39.37 -0.29 1.30 16 25 F -0.14 -2.25 17.25 2.25 0.04 -2.21 16 26 C -0.12 -1.96 6.12 -104.14 -0.64 -2.60 16 27 C -0.08 -1.34 6.17 -26.86 -0.17 -1.50 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.98 8.13 -51.93 -0.42 0.56 16 32 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 33 H 0.06 0.94 6.77 -51.93 -0.35 0.59 16 34 H 0.09 1.56 5.95 -51.93 -0.31 1.25 16 35 H 0.04 1.00 6.78 -51.93 -0.35 0.65 16 36 H -0.02 -0.45 7.60 -51.93 -0.39 -0.84 16 37 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.08 1.25 5.58 -51.93 -0.29 0.96 16 39 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 40 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16 41 H 0.13 1.01 8.06 -52.48 -0.42 0.59 16 42 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 44 H 0.08 1.47 6.15 -51.93 -0.32 1.16 16 LS Contribution 361.35 15.07 5.45 5.45 Total: -1.00 -30.85 361.35 -9.27 -40.12 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -6.15 Total: -0.02 kcal Atomic # 6 Polarization: -5.16 SS G_CDS: -2.80 Total: -7.96 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: -0.11 Total: -33.74 kcal Atomic # 8 Polarization: -17.11 SS G_CDS: -0.67 Total: -17.77 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.85 -9.27 -40.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171809736.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.329 kcal (2) G-P(sol) polarization free energy of solvation -30.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds