Wall clock time and date at job start Tue Mar 31 2020 13:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.45197 * 109.47295 * 2 1 4 4 C 1.34228 * 117.00065 * 179.97438 * 3 2 1 5 5 O 1.20820 * 120.00222 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99669 * 179.97438 * 4 3 2 7 7 N 1.46907 * 109.46702 * 179.97438 * 6 4 3 8 8 C 1.46900 * 110.99891 * 283.58147 * 7 6 4 9 9 C 1.50703 * 109.46761 * 170.00469 * 8 7 6 10 10 H 1.07997 * 119.99993 * 119.73034 * 9 8 7 11 11 C 1.37881 * 119.99557 * 299.99585 * 9 8 7 12 12 N 1.31512 * 120.00300 * 359.72931 * 11 9 8 13 13 Si 1.86796 * 119.99560 * 179.72951 * 11 9 8 14 14 H 1.48500 * 109.47667 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.47330 * 120.00066 * 13 11 9 16 16 H 1.48500 * 109.47100 * 239.99832 * 13 11 9 17 17 C 1.46900 * 110.99642 * 159.62936 * 7 6 4 18 18 H 1.09004 * 110.72653 * 171.58228 * 17 7 6 19 19 C 1.54344 * 110.82830 * 47.95360 * 17 7 6 20 20 C 1.51373 * 105.17133 * 215.43242 * 19 17 7 21 21 C 1.38512 * 130.37421 * 197.18771 * 20 19 17 22 22 C 1.38115 * 120.26962 * 179.97438 * 21 20 19 23 23 C 1.38208 * 119.96194 * 0.02562 * 22 21 20 24 24 C 1.38328 * 119.90882 * 0.02562 * 23 22 21 25 25 F 1.35103 * 119.92330 * 179.97438 * 24 23 22 26 26 C 1.38177 * 109.75710 * 17.18931 * 20 19 17 27 27 C 1.51361 * 109.77435 * 359.97438 * 26 20 19 28 28 H 1.09003 * 109.47213 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47142 * 300.00684 * 1 2 3 30 30 H 1.09006 * 109.46817 * 60.00687 * 1 2 3 31 31 H 1.08998 * 109.47142 * 239.99316 * 2 1 3 32 32 H 1.09006 * 109.46817 * 119.99312 * 2 1 3 33 33 H 1.08994 * 109.47345 * 60.00345 * 6 4 3 34 34 H 1.09000 * 109.47778 * 299.99736 * 6 4 3 35 35 H 1.08995 * 109.46912 * 50.00143 * 8 7 6 36 36 H 1.09000 * 109.47051 * 290.00179 * 8 7 6 37 37 H 0.96994 * 119.99962 * 180.02562 * 12 11 9 38 38 H 1.09007 * 110.30110 * 334.35742 * 19 17 7 39 39 H 1.08998 * 110.30156 * 96.50340 * 19 17 7 40 40 H 1.08006 * 119.86536 * 0.02562 * 21 20 19 41 41 H 1.08004 * 120.01789 * 180.02562 * 22 21 20 42 42 H 1.08001 * 120.04871 * 179.97438 * 23 22 21 43 43 H 1.08998 * 110.30500 * 223.89571 * 27 26 20 44 44 H 1.09000 * 110.38327 * 101.77835 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5448 0.0005 5 8 4.0808 0.5866 0.0015 6 6 3.9207 2.9374 0.0000 7 7 5.3878 2.8604 0.0014 8 6 5.8954 2.5123 1.3352 9 6 7.3677 2.2026 1.2472 10 1 8.0776 2.7902 1.8102 11 6 7.8086 1.1726 0.4436 12 7 6.9440 0.4569 -0.2419 13 14 9.6341 0.7936 0.3287 14 1 10.3908 1.7364 1.1911 15 1 9.8802 -0.5985 0.7832 16 1 10.0826 0.9411 -1.0793 17 6 5.9812 4.1164 -0.4765 18 1 7.0620 4.1107 -0.3352 19 6 5.3378 5.3300 0.2274 20 6 5.2908 6.4185 -0.8235 21 6 5.1184 7.7864 -0.6913 22 6 5.1099 8.5982 -1.8087 23 6 5.2734 8.0454 -3.0648 24 6 5.4447 6.6795 -3.2002 25 9 5.6040 6.1387 -4.4280 26 6 5.4544 5.8636 -2.0783 27 6 5.6233 4.3643 -1.9572 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.5844 3.4700 0.8895 34 1 3.5853 3.4690 -0.8905 35 1 5.3621 1.6388 1.7102 36 1 5.7405 3.3515 2.0133 37 1 7.2542 -0.2679 -0.8069 38 1 4.3301 5.0830 0.5615 39 1 5.9503 5.6458 1.0720 40 1 4.9909 8.2202 0.2896 41 1 4.9755 9.6645 -1.7009 42 1 5.2665 8.6788 -3.9395 43 1 6.4303 4.0210 -2.6044 44 1 4.6932 3.8557 -2.2111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171809736.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:25 Heat of formation + Delta-G solvation = -100.807097 kcal Electronic energy + Delta-G solvation = -27775.627403 eV Core-core repulsion = 23800.420003 eV Total energy + Delta-G solvation = -3975.207400 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.83598 -41.51529 -40.85648 -38.58423 -37.14908 -35.28279 -33.96268 -32.57167 -31.88197 -29.98840 -29.54692 -28.25900 -26.85108 -24.23542 -24.00691 -22.75243 -22.26319 -22.04847 -20.39345 -18.79214 -18.18456 -18.03426 -17.49074 -17.39957 -16.95493 -16.72476 -16.57413 -16.46029 -15.86020 -15.61992 -15.29524 -14.91608 -14.63793 -14.30956 -14.09640 -13.89985 -13.78820 -13.66645 -13.49375 -13.36271 -13.13763 -12.86898 -12.76628 -12.52050 -12.40474 -12.34246 -12.21488 -12.17422 -11.98405 -11.76900 -11.54137 -11.35542 -11.11050 -10.93030 -10.42165 -9.56613 -9.53887 -8.62404 -7.81352 -6.07154 0.24019 0.28860 1.40679 1.44597 1.52764 1.59105 1.82153 2.50853 2.65364 3.13564 3.33874 3.45416 3.54272 3.82886 3.97134 4.03525 4.04699 4.16944 4.19007 4.24072 4.26699 4.30955 4.40882 4.42218 4.49346 4.60500 4.73377 4.87411 4.88882 4.94668 4.96066 4.96614 5.16385 5.18759 5.21674 5.25378 5.26031 5.43579 5.49938 5.62251 5.66872 5.79397 6.00517 6.21692 6.54546 6.73212 7.07207 7.24533 7.63870 9.14289 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.008292 B = 0.005305 C = 0.003727 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3375.816051 B = 5276.723055 C = 7511.926219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.056 3.944 3 O -0.373 6.373 4 C 0.434 3.566 5 O -0.475 6.475 6 C 0.063 3.937 7 N -0.499 5.499 8 C 0.209 3.791 9 C -0.560 4.560 10 H 0.047 0.953 11 C 0.045 3.955 12 N -0.837 5.837 13 Si 0.928 3.072 14 H -0.268 1.268 15 H -0.287 1.287 16 H -0.287 1.287 17 C 0.110 3.890 18 H 0.078 0.922 19 C -0.112 4.112 20 C -0.065 4.065 21 C -0.116 4.116 22 C -0.083 4.083 23 C -0.155 4.155 24 C 0.083 3.917 25 F -0.155 7.155 26 C -0.146 4.146 27 C -0.068 4.068 28 H 0.098 0.902 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.114 0.886 35 H 0.003 0.997 36 H -0.005 1.005 37 H 0.246 0.754 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.152 0.848 41 H 0.172 0.828 42 H 0.158 0.842 43 H 0.054 0.946 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.492 13.894 -2.220 18.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.018 4.018 3 O -0.292 6.292 4 C 0.274 3.726 5 O -0.357 6.357 6 C -0.066 4.066 7 N -0.222 5.222 8 C 0.084 3.916 9 C -0.599 4.599 10 H 0.065 0.935 11 C -0.162 4.162 12 N -0.470 5.470 13 Si 0.755 3.245 14 H -0.192 1.192 15 H -0.213 1.213 16 H -0.214 1.214 17 C 0.001 3.999 18 H 0.096 0.904 19 C -0.151 4.151 20 C -0.065 4.065 21 C -0.134 4.134 22 C -0.101 4.101 23 C -0.174 4.174 24 C 0.064 3.936 25 F -0.134 7.134 26 C -0.147 4.147 27 C -0.105 4.105 28 H 0.116 0.884 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.098 0.902 34 H 0.131 0.869 35 H 0.021 0.979 36 H 0.013 0.987 37 H 0.055 0.945 38 H 0.112 0.888 39 H 0.100 0.900 40 H 0.170 0.830 41 H 0.190 0.810 42 H 0.175 0.825 43 H 0.073 0.927 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.168 12.952 -2.703 17.315 hybrid contribution 1.174 -0.716 -0.038 1.376 sum -9.994 12.237 -2.741 16.035 Atomic orbital electron populations 1.21777 0.89779 1.04197 1.03754 1.23104 0.97249 0.80084 1.01406 1.86458 1.24687 1.32896 1.85144 1.24284 0.80344 0.93998 0.73999 1.90902 1.59980 1.43087 1.41781 1.21605 0.91658 0.89404 1.03926 1.61802 1.00836 1.29710 1.29888 1.19444 0.94982 0.92788 0.84376 1.21093 0.92666 1.16944 1.29190 0.93459 1.25587 0.99392 0.95930 0.95282 1.70429 1.33204 1.17715 1.25628 0.86009 0.83358 0.77754 0.77390 1.19246 1.21323 1.21381 1.22043 0.99373 0.86301 0.92212 0.90389 1.21846 1.02430 0.93367 0.97450 1.20531 0.97663 0.94807 0.93532 1.21069 1.00337 0.91065 1.00956 1.21303 0.97024 1.01622 0.90102 1.21337 1.03594 0.91558 1.00909 1.17727 1.04865 0.92621 0.78361 1.91438 1.93355 1.86999 1.41641 1.20671 1.04046 0.96306 0.93726 1.20956 1.01502 0.90439 0.97631 0.88385 0.91040 0.91098 0.92713 0.92731 0.90183 0.86873 0.97873 0.98724 0.94520 0.88838 0.90001 0.82987 0.81046 0.82464 0.92698 0.90416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 10.29 71.98 0.74 -1.95 16 2 C 0.06 1.65 6.19 71.98 0.45 2.09 16 3 O -0.37 -13.00 10.22 -51.40 -0.53 -13.53 16 4 C 0.43 18.20 7.62 71.24 0.54 18.74 16 5 O -0.47 -24.60 14.10 21.98 0.31 -24.29 16 6 C 0.06 2.36 4.10 85.56 0.35 2.71 16 7 N -0.50 -22.41 3.37 -874.72 -2.95 -25.36 16 8 C 0.21 10.49 4.46 85.56 0.38 10.87 16 9 C -0.56 -31.04 8.12 25.60 0.21 -30.83 16 10 H 0.05 2.59 7.81 -2.91 -0.02 2.57 16 11 C 0.05 2.55 5.39 84.66 0.46 3.01 16 12 N -0.84 -50.29 11.84 21.45 0.25 -50.04 16 13 Si 0.93 44.88 29.54 68.60 2.03 46.91 16 14 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 15 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 16 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 17 C 0.11 4.32 2.98 45.83 0.14 4.46 16 18 H 0.08 3.56 7.06 -2.39 -0.02 3.54 16 19 C -0.11 -3.40 5.56 30.52 0.17 -3.23 16 20 C -0.06 -1.76 6.14 -19.60 -0.12 -1.88 16 21 C -0.12 -2.34 10.04 22.31 0.22 -2.12 16 22 C -0.08 -1.39 10.04 22.23 0.22 -1.17 16 23 C -0.16 -3.23 10.02 22.28 0.22 -3.01 16 24 C 0.08 2.38 7.30 22.41 0.16 2.55 16 25 F -0.16 -4.91 17.25 44.97 0.78 -4.13 16 26 C -0.15 -4.57 6.12 -19.55 -0.12 -4.69 16 27 C -0.07 -2.49 6.17 30.51 0.19 -2.30 16 28 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 32 H 0.05 1.71 8.13 -2.38 -0.02 1.69 16 33 H 0.08 2.61 6.77 -2.39 -0.02 2.60 16 34 H 0.11 3.76 5.95 -2.39 -0.01 3.75 16 35 H 0.00 0.18 6.78 -2.39 -0.02 0.16 16 36 H -0.01 -0.24 7.60 -2.39 -0.02 -0.25 16 37 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 38 H 0.09 2.61 5.58 -2.38 -0.01 2.60 16 39 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 41 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 42 H 0.16 2.42 8.06 -2.91 -0.02 2.39 16 43 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.08 2.86 6.15 -2.39 -0.01 2.84 16 Total: -1.00 -70.85 361.35 5.12 -65.73 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 1.01 Total: 11.45 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: 4.21 Total: -6.75 kcal Atomic # 7 Polarization: -72.71 SS G_CDS: -2.70 Total: -75.40 kcal Atomic # 8 Polarization: -37.60 SS G_CDS: -0.22 Total: -37.81 kcal Atomic # 9 Polarization: -4.91 SS G_CDS: 0.78 Total: -4.13 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -70.85 5.12 -65.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171809736.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.074 kcal (2) G-P(sol) polarization free energy of solvation -70.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds