Wall clock time and date at job start Tue Mar 31 2020 13:35:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35962 * 116.99608 * 2 1 4 4 C 1.38665 * 120.06271 * 359.97438 * 3 2 1 5 5 C 1.38177 * 119.96737 * 179.97438 * 4 3 2 6 6 C 1.50699 * 119.95529 * 179.97438 * 5 4 3 7 7 C 1.50705 * 109.47061 * 89.99644 * 6 5 4 8 8 O 1.21282 * 120.00040 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99875 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99778 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.41443 * 35.14139 * 10 9 7 12 12 C 1.52955 * 109.41109 * 155.00261 * 10 9 7 13 13 C 1.53233 * 109.40144 * 183.70280 * 12 10 9 14 14 C 1.51266 * 108.69594 * 305.27439 * 13 12 10 15 15 C 1.37880 * 120.85369 * 231.42222 * 14 13 12 16 16 N 1.31516 * 119.99330 * 359.97438 * 15 14 13 17 17 Si 1.86796 * 120.00384 * 180.02562 * 15 14 13 18 18 H 1.48495 * 109.47360 * 89.99849 * 17 15 14 19 19 H 1.48505 * 109.47069 * 210.00027 * 17 15 14 20 20 H 1.48505 * 109.47051 * 329.99565 * 17 15 14 21 21 C 1.51663 * 118.04935 * 51.26381 * 14 13 12 22 22 C 1.52965 * 109.41060 * 275.35258 * 10 9 7 23 23 C 1.38270 * 120.09361 * 0.26021 * 5 4 3 24 24 C 1.38255 * 120.12440 * 359.48502 * 23 5 4 25 25 C 1.38330 * 120.03036 * 0.51533 * 24 23 5 26 26 F 1.35102 * 120.04414 * 179.72141 * 25 24 23 27 27 H 1.09002 * 109.47317 * 300.00531 * 1 2 3 28 28 H 1.09002 * 109.46623 * 60.00573 * 1 2 3 29 29 H 1.09005 * 109.46742 * 180.02562 * 1 2 3 30 30 H 1.07996 * 120.01234 * 0.02562 * 4 3 2 31 31 H 1.08998 * 109.46624 * 330.00294 * 6 5 4 32 32 H 1.08996 * 109.47267 * 210.00315 * 6 5 4 33 33 H 0.96995 * 119.99834 * 0.02562 * 9 7 6 34 34 H 1.08998 * 109.48361 * 63.72630 * 12 10 9 35 35 H 1.08999 * 109.49184 * 303.68527 * 12 10 9 36 36 H 1.09002 * 109.62728 * 65.08623 * 13 12 10 37 37 H 1.09001 * 109.62680 * 185.46410 * 13 12 10 38 38 H 0.97006 * 119.99639 * 180.02562 * 16 15 14 39 39 H 1.09001 * 109.55834 * 189.01867 * 21 14 13 40 40 H 1.08999 * 109.74924 * 68.61025 * 21 14 13 41 41 H 1.08997 * 109.48290 * 296.27618 * 22 10 9 42 42 H 1.08998 * 109.48095 * 56.30437 * 22 10 9 43 43 H 1.08006 * 119.93311 * 179.74895 * 23 5 4 44 44 H 1.07999 * 119.98040 * 180.23316 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2922 2.3752 -0.0005 5 6 1.9215 3.6053 0.0000 6 6 1.1018 4.8699 -0.0012 7 6 0.8268 5.2916 1.4193 8 8 1.2547 4.6306 2.3418 9 7 0.1053 6.4032 1.6645 10 6 -0.1616 6.8134 3.0454 11 1 0.7000 6.5723 3.6679 12 6 -0.4135 8.3215 3.0880 13 6 -0.6010 8.7653 4.5427 14 6 -1.7022 7.9356 5.1647 15 6 -2.7555 8.5363 5.8210 16 7 -2.8114 9.8471 5.9125 17 14 -4.1022 7.4886 6.5811 18 1 -3.7409 7.1588 7.9832 19 1 -5.3831 8.2398 6.5637 20 1 -4.2534 6.2342 5.8007 21 6 -1.6142 6.4265 5.0416 22 6 -1.3900 6.0674 3.5690 23 6 3.3023 3.6778 -0.0044 24 6 4.0579 2.5200 0.0015 25 6 3.4333 1.2857 0.0009 26 9 4.1714 0.1541 0.0009 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 0.2137 2.3200 -0.0005 31 1 0.1579 4.6905 -0.5160 32 1 1.6514 5.6588 -0.5145 33 1 -0.2373 6.9316 0.9268 34 1 -1.3122 8.5562 2.5177 35 1 0.4389 8.8450 2.6552 36 1 0.3271 8.6144 5.0940 37 1 -0.8764 9.8196 4.5712 38 1 -3.5523 10.2698 6.3745 39 1 -2.5440 5.9771 5.3906 40 1 -0.7816 6.0561 5.6396 41 1 -2.2656 6.3555 2.9872 42 1 -1.2296 4.9933 3.4768 43 1 3.7914 4.6407 -0.0080 44 1 5.1362 2.5793 0.0019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180426922.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:17 Heat of formation + Delta-G solvation = -112.225655 kcal Electronic energy + Delta-G solvation = -26664.456819 eV Core-core repulsion = 22688.754273 eV Total energy + Delta-G solvation = -3975.702546 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.88906 -40.43570 -39.47695 -37.79178 -36.66627 -33.71980 -32.73472 -31.53218 -30.52326 -29.70324 -28.54931 -27.47077 -26.41170 -22.84300 -22.67675 -21.78722 -21.48630 -20.04478 -19.51876 -18.27020 -17.32182 -17.02361 -16.97965 -16.30760 -15.98848 -15.66640 -15.20869 -15.02364 -14.73398 -14.49653 -14.41721 -14.29193 -13.67914 -13.34845 -13.12419 -12.79471 -12.51130 -12.42321 -12.35817 -12.13871 -11.99517 -11.77879 -11.56267 -11.36380 -11.30397 -11.04215 -10.85526 -10.74314 -10.22165 -10.04303 -9.69671 -9.55052 -9.08415 -8.98980 -8.87539 -8.52284 -8.33426 -8.33051 -6.13551 -4.04549 0.90119 1.08228 2.86208 2.90571 3.21970 3.25639 3.33641 3.34616 3.68019 4.05933 4.34090 4.35690 4.49851 4.75150 4.86877 4.90957 4.96223 5.02991 5.14887 5.18258 5.22863 5.27422 5.35122 5.68141 5.75441 5.78029 5.85839 5.97362 6.15978 6.26140 6.42102 6.43597 6.44510 6.67424 6.73238 6.85510 6.92798 7.04399 7.08033 7.21301 7.40272 7.60445 7.67591 7.72886 7.89138 8.34642 8.51818 8.92236 9.51342 10.95861 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020966 B = 0.002671 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.184303 B =10482.131948 C =11248.478376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.312 6.312 3 C 0.097 3.903 4 C -0.166 4.166 5 C -0.029 4.029 6 C -0.107 4.107 7 C 0.508 3.492 8 O -0.534 6.534 9 N -0.725 5.725 10 C 0.154 3.846 11 H 0.078 0.922 12 C -0.113 4.113 13 C 0.012 3.988 14 C -0.487 4.487 15 C 0.076 3.924 16 N -0.891 5.891 17 Si 0.887 3.113 18 H -0.278 1.278 19 H -0.290 1.290 20 H -0.265 1.265 21 C -0.020 4.020 22 C -0.111 4.111 23 C -0.114 4.114 24 C -0.114 4.114 25 C 0.064 3.936 26 F -0.136 7.136 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.102 0.898 30 H 0.136 0.864 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.394 0.606 34 H 0.054 0.946 35 H 0.035 0.965 36 H 0.006 0.994 37 H 0.060 0.940 38 H 0.264 0.736 39 H 0.035 0.965 40 H 0.019 0.981 41 H 0.050 0.950 42 H 0.035 0.965 43 H 0.134 0.866 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.252 -12.151 -16.780 21.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.225 6.225 3 C 0.051 3.949 4 C -0.185 4.185 5 C -0.030 4.030 6 C -0.147 4.147 7 C 0.293 3.707 8 O -0.411 6.411 9 N -0.374 5.374 10 C 0.051 3.949 11 H 0.096 0.904 12 C -0.152 4.152 13 C -0.026 4.026 14 C -0.506 4.506 15 C -0.126 4.126 16 N -0.529 5.529 17 Si 0.715 3.285 18 H -0.204 1.204 19 H -0.217 1.217 20 H -0.190 1.190 21 C -0.058 4.058 22 C -0.150 4.150 23 C -0.132 4.132 24 C -0.132 4.132 25 C 0.044 3.956 26 F -0.114 7.114 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.154 0.846 31 H 0.120 0.880 32 H 0.124 0.876 33 H 0.227 0.773 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.024 0.976 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.053 0.947 40 H 0.037 0.963 41 H 0.069 0.931 42 H 0.054 0.946 43 H 0.152 0.848 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.553 -12.703 -16.021 21.797 hybrid contribution -1.170 -0.269 0.079 1.203 sum 6.383 -12.972 -15.942 21.522 Atomic orbital electron populations 1.23135 0.77816 1.04247 1.01754 1.86120 1.21826 1.25762 1.88791 1.18914 0.90779 0.85522 0.99733 1.20953 1.00220 0.90914 1.06430 1.19143 0.93561 0.93295 0.96994 1.20745 1.01532 0.96232 0.96150 1.20342 0.78640 0.81202 0.90535 1.90737 1.51211 1.53127 1.46012 1.46427 1.54197 1.26554 1.10270 1.21061 0.98458 0.95554 0.79814 0.90432 1.21922 0.98964 0.92240 1.02070 1.19343 0.95241 0.99042 0.88958 1.20115 1.06835 0.89502 1.34167 1.24818 0.97480 0.94819 0.95520 1.69833 1.31963 1.08595 1.42492 0.86677 0.81345 0.80537 0.79920 1.20361 1.21652 1.18990 1.19856 0.97417 0.96829 0.91684 1.21870 0.96412 0.96937 0.99823 1.20774 0.92798 0.98198 1.01418 1.20943 1.00969 0.90085 1.01250 1.16955 0.85926 0.82997 1.09734 1.91484 1.76383 1.49179 1.94385 0.92132 0.92447 0.87959 0.84600 0.87955 0.87640 0.77278 0.92733 0.94597 0.97581 0.92102 0.92576 0.94699 0.96274 0.93134 0.94609 0.84836 0.84008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.78 10.36 -19.62 -0.20 -3.99 16 3 C 0.10 1.22 6.69 -39.18 -0.26 0.95 16 4 C -0.17 -1.90 8.69 -39.45 -0.34 -2.24 16 5 C -0.03 -0.32 4.37 -104.63 -0.46 -0.78 16 6 C -0.11 -1.01 5.83 -29.03 -0.17 -1.18 16 7 C 0.51 7.32 7.78 -10.98 -0.09 7.23 16 8 O -0.53 -10.18 15.70 5.56 0.09 -10.10 16 9 N -0.72 -10.41 5.07 -53.84 -0.27 -10.68 16 10 C 0.15 2.89 2.35 -67.97 -0.16 2.73 16 11 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 12 C -0.11 -2.22 5.40 -26.63 -0.14 -2.36 16 13 C 0.01 0.29 5.95 -27.49 -0.16 0.13 16 14 C -0.49 -12.59 5.53 -98.73 -0.55 -13.14 16 15 C 0.08 2.05 5.46 -17.82 -0.10 1.95 16 16 N -0.89 -25.13 12.73 55.43 0.71 -24.43 16 17 Si 0.89 20.84 27.55 -169.99 -4.68 16.16 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.26 -6.03 6.11 56.52 0.35 -5.68 16 21 C -0.02 -0.46 5.61 -27.29 -0.15 -0.62 16 22 C -0.11 -2.28 5.50 -26.63 -0.15 -2.43 16 23 C -0.11 -1.20 9.69 -39.56 -0.38 -1.58 16 24 C -0.11 -1.22 10.02 -39.54 -0.40 -1.62 16 25 C 0.06 0.81 7.31 -39.30 -0.29 0.52 16 26 F -0.14 -1.83 17.11 2.25 0.04 -1.80 16 27 H 0.06 0.49 7.66 -51.93 -0.40 0.09 16 28 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 29 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.14 1.31 6.30 -52.49 -0.33 0.98 16 31 H 0.10 0.74 8.08 -51.93 -0.42 0.32 16 32 H 0.11 0.73 8.08 -51.93 -0.42 0.31 16 33 H 0.39 4.38 8.60 -40.82 -0.35 4.03 16 34 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 37 H 0.06 1.60 7.07 -51.93 -0.37 1.23 16 38 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.03 0.81 4.64 -51.93 -0.24 0.57 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 44 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 361.96 15.07 5.45 5.45 Total: -1.00 -32.21 361.96 -7.99 -40.20 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -6.31 Total: 0.41 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -2.80 Total: -11.24 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.43 Total: -35.11 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: -0.12 Total: -14.08 kcal Atomic # 9 Polarization: -1.83 SS G_CDS: 0.04 Total: -1.80 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.68 Total: 16.16 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.21 -7.99 -40.20 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180426922.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.023 kcal (2) G-P(sol) polarization free energy of solvation -32.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds