Wall clock time and date at job start Tue Mar 31 2020 13:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35962 * 116.99608 * 2 1 4 4 C 1.38665 * 120.06271 * 359.97438 * 3 2 1 5 5 C 1.38177 * 119.96737 * 179.97438 * 4 3 2 6 6 C 1.50699 * 119.95529 * 179.97438 * 5 4 3 7 7 C 1.50705 * 109.47061 * 89.99644 * 6 5 4 8 8 O 1.21282 * 120.00040 * 0.02562 * 7 6 5 9 9 N 1.34774 * 119.99875 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99778 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.41443 * 35.14139 * 10 9 7 12 12 C 1.52955 * 109.41109 * 155.00261 * 10 9 7 13 13 C 1.53233 * 109.40144 * 183.70280 * 12 10 9 14 14 C 1.51266 * 108.69594 * 305.27439 * 13 12 10 15 15 C 1.37880 * 120.85369 * 231.42222 * 14 13 12 16 16 N 1.31516 * 119.99330 * 359.97438 * 15 14 13 17 17 Si 1.86796 * 120.00384 * 180.02562 * 15 14 13 18 18 H 1.48495 * 109.47360 * 89.99849 * 17 15 14 19 19 H 1.48505 * 109.47069 * 210.00027 * 17 15 14 20 20 H 1.48505 * 109.47051 * 329.99565 * 17 15 14 21 21 C 1.51663 * 118.04935 * 51.26381 * 14 13 12 22 22 C 1.52965 * 109.41060 * 275.35258 * 10 9 7 23 23 C 1.38270 * 120.09361 * 0.26021 * 5 4 3 24 24 C 1.38255 * 120.12440 * 359.48502 * 23 5 4 25 25 C 1.38330 * 120.03036 * 0.51533 * 24 23 5 26 26 F 1.35102 * 120.04414 * 179.72141 * 25 24 23 27 27 H 1.09002 * 109.47317 * 300.00531 * 1 2 3 28 28 H 1.09002 * 109.46623 * 60.00573 * 1 2 3 29 29 H 1.09005 * 109.46742 * 180.02562 * 1 2 3 30 30 H 1.07996 * 120.01234 * 0.02562 * 4 3 2 31 31 H 1.08998 * 109.46624 * 330.00294 * 6 5 4 32 32 H 1.08996 * 109.47267 * 210.00315 * 6 5 4 33 33 H 0.96995 * 119.99834 * 0.02562 * 9 7 6 34 34 H 1.08998 * 109.48361 * 63.72630 * 12 10 9 35 35 H 1.08999 * 109.49184 * 303.68527 * 12 10 9 36 36 H 1.09002 * 109.62728 * 65.08623 * 13 12 10 37 37 H 1.09001 * 109.62680 * 185.46410 * 13 12 10 38 38 H 0.97006 * 119.99639 * 180.02562 * 16 15 14 39 39 H 1.09001 * 109.55834 * 189.01867 * 21 14 13 40 40 H 1.08999 * 109.74924 * 68.61025 * 21 14 13 41 41 H 1.08997 * 109.48290 * 296.27618 * 22 10 9 42 42 H 1.08998 * 109.48095 * 56.30437 * 22 10 9 43 43 H 1.08006 * 119.93311 * 179.74895 * 23 5 4 44 44 H 1.07999 * 119.98040 * 180.23316 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2115 0.0000 4 6 1.2922 2.3752 -0.0005 5 6 1.9215 3.6053 0.0000 6 6 1.1018 4.8699 -0.0012 7 6 0.8268 5.2916 1.4193 8 8 1.2547 4.6306 2.3418 9 7 0.1053 6.4032 1.6645 10 6 -0.1616 6.8134 3.0454 11 1 0.7000 6.5723 3.6679 12 6 -0.4135 8.3215 3.0880 13 6 -0.6010 8.7653 4.5427 14 6 -1.7022 7.9356 5.1647 15 6 -2.7555 8.5363 5.8210 16 7 -2.8114 9.8471 5.9125 17 14 -4.1022 7.4886 6.5811 18 1 -3.7409 7.1588 7.9832 19 1 -5.3831 8.2398 6.5637 20 1 -4.2534 6.2342 5.8007 21 6 -1.6142 6.4265 5.0416 22 6 -1.3900 6.0674 3.5690 23 6 3.3023 3.6778 -0.0044 24 6 4.0579 2.5200 0.0015 25 6 3.4333 1.2857 0.0009 26 9 4.1714 0.1541 0.0009 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 0.2137 2.3200 -0.0005 31 1 0.1579 4.6905 -0.5160 32 1 1.6514 5.6588 -0.5145 33 1 -0.2373 6.9316 0.9268 34 1 -1.3122 8.5562 2.5177 35 1 0.4389 8.8450 2.6552 36 1 0.3271 8.6144 5.0940 37 1 -0.8764 9.8196 4.5712 38 1 -3.5523 10.2698 6.3745 39 1 -2.5440 5.9771 5.3906 40 1 -0.7816 6.0561 5.6396 41 1 -2.2656 6.3555 2.9872 42 1 -1.2296 4.9933 3.4768 43 1 3.7914 4.6407 -0.0080 44 1 5.1362 2.5793 0.0019 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180426922.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:16 Heat of formation + Delta-G solvation = -132.243100 kcal Electronic energy + Delta-G solvation = -26665.324841 eV Core-core repulsion = 22688.754273 eV Total energy + Delta-G solvation = -3976.570568 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.84339 -41.34113 -40.59237 -38.80200 -38.10226 -35.31201 -33.77857 -33.11673 -31.46789 -31.32088 -29.68077 -28.58901 -27.47958 -24.23808 -23.58253 -23.33740 -22.84217 -21.28090 -21.11804 -19.16171 -18.35298 -18.14011 -17.87005 -17.59705 -17.13440 -16.99969 -16.42780 -16.07158 -16.02712 -15.58198 -15.37925 -15.18164 -15.01475 -14.77025 -14.53591 -14.25186 -14.03492 -13.92561 -13.51099 -13.19531 -13.06269 -12.88336 -12.77369 -12.65570 -12.52683 -12.41048 -12.13749 -12.05147 -11.93562 -11.80626 -11.39936 -11.05228 -10.76455 -10.61365 -10.52835 -9.86052 -9.81782 -9.19193 -8.17164 -6.11488 0.04934 0.26418 1.38319 1.41619 1.49073 1.77691 2.16563 2.25009 2.40740 2.68500 3.11374 3.22007 3.55195 3.73433 3.96895 4.05335 4.15179 4.21626 4.26097 4.27720 4.32859 4.47371 4.52356 4.59195 4.64700 4.69072 4.72600 4.88303 4.95924 4.97364 4.98690 5.09000 5.17638 5.20038 5.25348 5.26969 5.46167 5.56205 5.60317 5.66029 5.73441 5.76725 5.84263 6.25281 6.35316 6.75243 6.94086 7.43487 7.47065 8.93234 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020966 B = 0.002671 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.184303 B =10482.131948 C =11248.478376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.080 3.920 4 C -0.172 4.172 5 C -0.039 4.039 6 C -0.094 4.094 7 C 0.508 3.492 8 O -0.585 6.585 9 N -0.713 5.713 10 C 0.167 3.833 11 H 0.051 0.949 12 C -0.099 4.099 13 C 0.006 3.994 14 C -0.497 4.497 15 C 0.025 3.975 16 N -0.929 5.929 17 Si 0.936 3.064 18 H -0.279 1.279 19 H -0.289 1.289 20 H -0.251 1.251 21 C -0.023 4.023 22 C -0.104 4.104 23 C -0.118 4.118 24 C -0.114 4.114 25 C 0.034 3.966 26 F -0.148 7.148 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.121 0.879 30 H 0.151 0.849 31 H 0.134 0.866 32 H 0.142 0.858 33 H 0.415 0.585 34 H 0.059 0.941 35 H 0.060 0.940 36 H -0.006 1.006 37 H 0.033 0.967 38 H 0.263 0.737 39 H 0.034 0.966 40 H 0.009 0.991 41 H 0.057 0.943 42 H 0.038 0.962 43 H 0.157 0.843 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.871 -12.515 -19.025 23.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.034 3.966 4 C -0.191 4.191 5 C -0.040 4.040 6 C -0.133 4.133 7 C 0.295 3.705 8 O -0.464 6.464 9 N -0.364 5.364 10 C 0.062 3.938 11 H 0.070 0.930 12 C -0.138 4.138 13 C -0.032 4.032 14 C -0.517 4.517 15 C -0.173 4.173 16 N -0.569 5.569 17 Si 0.763 3.237 18 H -0.205 1.205 19 H -0.215 1.215 20 H -0.175 1.175 21 C -0.061 4.061 22 C -0.143 4.143 23 C -0.136 4.136 24 C -0.133 4.133 25 C 0.014 3.986 26 F -0.127 7.127 27 H 0.075 0.925 28 H 0.093 0.907 29 H 0.139 0.861 30 H 0.169 0.831 31 H 0.152 0.848 32 H 0.160 0.840 33 H 0.251 0.749 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.012 0.988 37 H 0.052 0.948 38 H 0.073 0.927 39 H 0.053 0.947 40 H 0.028 0.972 41 H 0.076 0.924 42 H 0.057 0.943 43 H 0.175 0.825 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 7.164 -13.069 -18.315 23.613 hybrid contribution -0.989 -0.160 0.802 1.284 sum 6.174 -13.228 -17.513 22.799 Atomic orbital electron populations 1.23394 0.75970 1.05829 1.02413 1.86088 1.23867 1.26027 1.88881 1.19159 0.91031 0.86169 1.00203 1.21191 1.01022 0.90748 1.06149 1.19444 0.94108 0.93829 0.96595 1.20777 1.03429 0.96310 0.92766 1.21162 0.77123 0.80055 0.92132 1.90733 1.53017 1.54550 1.48141 1.46114 1.54338 1.27098 1.08874 1.20564 0.96568 0.94590 0.82088 0.93040 1.21676 1.00281 0.93054 0.98758 1.19318 0.94232 0.97472 0.92165 1.20665 1.06781 0.90985 1.33236 1.25527 0.99805 0.95677 0.96296 1.69953 1.32812 1.10053 1.44065 0.85869 0.79012 0.79691 0.79116 1.20539 1.21539 1.17526 1.19863 0.97043 0.95238 0.93923 1.21743 0.97527 0.97297 0.97722 1.21130 0.92914 0.98989 1.00541 1.21238 1.02186 0.89527 1.00302 1.17378 0.86434 0.83380 1.11402 1.91440 1.76664 1.49934 1.94670 0.92463 0.90665 0.86070 0.83108 0.84776 0.83996 0.74854 0.92230 0.92091 0.98759 0.94830 0.92742 0.94716 0.97212 0.92421 0.94320 0.82544 0.82030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.38 16 2 O -0.33 -8.02 10.36 -93.12 -0.97 -8.99 16 3 C 0.08 1.98 6.69 22.53 0.15 2.13 16 4 C -0.17 -3.60 8.69 22.36 0.19 -3.40 16 5 C -0.04 -0.75 4.37 -19.87 -0.09 -0.84 16 6 C -0.09 -1.35 5.83 29.10 0.17 -1.18 16 7 C 0.51 12.95 7.78 87.66 0.68 13.63 16 8 O -0.58 -21.27 15.70 -3.04 -0.05 -21.31 16 9 N -0.71 -17.96 5.07 -442.65 -2.25 -20.21 16 10 C 0.17 5.93 2.35 44.96 0.11 6.04 16 11 H 0.05 2.14 7.58 -2.39 -0.02 2.12 16 12 C -0.10 -3.71 5.40 30.66 0.17 -3.54 16 13 C 0.01 0.30 5.95 30.11 0.18 0.48 16 14 C -0.50 -25.75 5.53 -16.05 -0.09 -25.84 16 15 C 0.03 1.37 5.46 84.66 0.46 1.83 16 16 N -0.93 -53.35 12.73 21.45 0.27 -53.07 16 17 Si 0.94 42.65 27.55 68.60 1.89 44.54 16 18 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 19 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 20 H -0.25 -10.75 6.11 99.48 0.61 -10.14 16 21 C -0.02 -1.04 5.61 30.23 0.17 -0.87 16 22 C -0.10 -4.07 5.50 30.66 0.17 -3.90 16 23 C -0.12 -2.17 9.69 22.28 0.22 -1.95 16 24 C -0.11 -2.30 10.02 22.30 0.22 -2.07 16 25 C 0.03 0.85 7.31 22.45 0.16 1.01 16 26 F -0.15 -4.09 17.11 44.97 0.77 -3.32 16 27 H 0.06 0.87 7.66 -2.39 -0.02 0.85 16 28 H 0.07 0.82 7.66 -2.39 -0.02 0.80 16 29 H 0.12 1.25 8.14 -2.38 -0.02 1.23 16 30 H 0.15 2.53 6.30 -2.91 -0.02 2.51 16 31 H 0.13 1.17 8.08 -2.39 -0.02 1.15 16 32 H 0.14 1.09 8.08 -2.39 -0.02 1.07 16 33 H 0.41 7.26 8.60 -92.71 -0.80 6.47 16 34 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 36 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 37 H 0.03 1.79 7.07 -2.39 -0.02 1.77 16 38 H 0.26 14.41 8.31 -92.70 -0.77 13.64 16 39 H 0.03 1.58 4.64 -2.39 -0.01 1.57 16 40 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 41 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.16 2.08 8.06 -2.91 -0.02 2.05 16 44 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -72.25 361.96 3.79 -68.46 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 0.13 Total: 11.01 kcal Atomic # 6 Polarization: -21.10 SS G_CDS: 3.99 Total: -17.11 kcal Atomic # 7 Polarization: -71.31 SS G_CDS: -1.97 Total: -73.28 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -1.01 Total: -30.30 kcal Atomic # 9 Polarization: -4.09 SS G_CDS: 0.77 Total: -3.32 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.89 Total: 44.54 kcal Total: -72.25 3.79 -68.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180426922.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.783 kcal (2) G-P(sol) polarization free energy of solvation -72.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds