Wall clock time and date at job start Tue Mar 31 2020 13:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35946 * 117.00012 * 2 1 4 4 C 1.38725 * 120.03144 * 0.02562 * 3 2 1 5 5 C 1.38130 * 119.97069 * 179.97438 * 4 3 2 6 6 C 1.38473 * 120.02774 * 0.02562 * 5 4 3 7 7 F 1.35099 * 119.96967 * 179.97438 * 6 5 4 8 8 C 1.38433 * 120.06236 * 359.96257 * 6 5 4 9 9 C 1.38167 * 120.03046 * 359.78580 * 8 6 5 10 10 C 1.50704 * 120.01756 * 180.25416 * 9 8 6 11 11 C 1.50693 * 109.47361 * 265.22646 * 10 9 8 12 12 O 1.21277 * 119.99992 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00275 * 179.97438 * 11 10 9 14 14 C 1.46503 * 120.00343 * 180.02562 * 13 11 10 15 15 H 1.08999 * 109.40699 * 324.85718 * 14 13 11 16 16 C 1.52955 * 109.41130 * 84.64796 * 14 13 11 17 17 C 1.53231 * 109.40123 * 183.70455 * 16 14 13 18 18 C 1.51275 * 108.53868 * 305.37437 * 17 16 14 19 19 C 1.37876 * 120.84851 * 231.32781 * 18 17 16 20 20 N 1.31513 * 120.00133 * 180.02562 * 19 18 17 21 21 Si 1.86801 * 120.00261 * 0.02562 * 19 18 17 22 22 H 1.48503 * 109.47267 * 89.99872 * 21 19 18 23 23 H 1.48497 * 109.47333 * 210.00454 * 21 19 18 24 24 H 1.48498 * 109.47034 * 330.00444 * 21 19 18 25 25 C 1.51266 * 118.29934 * 51.34562 * 18 17 16 26 26 C 1.52964 * 109.41195 * 205.00103 * 14 13 11 27 27 H 1.09001 * 109.47103 * 300.00293 * 1 2 3 28 28 H 1.09004 * 109.47054 * 59.99797 * 1 2 3 29 29 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 30 30 H 1.08000 * 120.01589 * 359.94789 * 4 3 2 31 31 H 1.07997 * 119.98618 * 180.02562 * 5 4 3 32 32 H 1.08000 * 119.98756 * 180.02562 * 8 6 5 33 33 H 1.08997 * 109.47029 * 25.23243 * 10 9 8 34 34 H 1.09007 * 109.46713 * 145.22987 * 10 9 8 35 35 H 0.97005 * 119.99932 * 0.02562 * 13 11 10 36 36 H 1.08995 * 109.48560 * 303.68679 * 16 14 13 37 37 H 1.09004 * 109.48251 * 63.72838 * 16 14 13 38 38 H 1.09000 * 109.62985 * 185.66063 * 17 16 14 39 39 H 1.09001 * 109.62741 * 65.08483 * 17 16 14 40 40 H 0.96991 * 120.00251 * 179.97438 * 20 19 18 41 41 H 1.09004 * 109.62713 * 188.93926 * 25 18 17 42 42 H 1.08999 * 109.78236 * 68.46086 * 25 18 17 43 43 H 1.08999 * 109.48302 * 296.27650 * 26 14 13 44 44 H 1.09005 * 109.47779 * 56.30228 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2913 2.3751 0.0005 5 6 1.9197 3.6052 0.0011 6 6 3.3026 3.6769 0.0005 7 9 3.9160 4.8806 0.0005 8 6 4.0572 2.5163 0.0002 9 6 3.4312 1.2846 0.0050 10 6 4.2529 0.0213 0.0104 11 6 4.4283 -0.4700 -1.4033 12 8 3.9351 0.1453 -2.3247 13 7 5.1342 -1.5927 -1.6439 14 6 5.3052 -2.0700 -3.0184 15 1 4.4015 -1.8591 -3.5901 16 6 6.4919 -1.3512 -3.6622 17 6 6.6138 -1.7819 -5.1277 18 6 6.6964 -3.2915 -5.1801 19 6 7.7043 -3.9205 -5.8797 20 7 7.7598 -5.2340 -5.9145 21 14 8.9910 -2.9072 -6.7780 22 1 10.1317 -2.6353 -5.8669 23 1 9.4733 -3.6589 -7.9644 24 1 8.3908 -1.6217 -7.2168 25 6 5.6446 -4.0931 -4.4457 26 6 5.5579 -3.5786 -3.0049 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.2128 2.3195 0.0001 31 1 1.3323 4.5114 0.0019 32 1 5.1356 2.5736 0.0002 33 1 5.2301 0.2254 0.4481 34 1 3.7430 -0.7412 0.5994 35 1 5.5290 -2.0846 -0.9070 36 1 6.3352 -0.2737 -3.6118 37 1 7.4068 -1.6110 -3.1297 38 1 7.5156 -1.3507 -5.5623 39 1 5.7388 -1.4437 -5.6827 40 1 8.4686 -5.6766 -6.4069 41 1 5.9237 -5.1468 -4.4420 42 1 4.6790 -3.9719 -4.9364 43 1 6.4949 -3.7856 -2.4879 44 1 4.7392 -4.0797 -2.4884 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001181694792.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:53 Heat of formation + Delta-G solvation = -132.177078 kcal Electronic energy + Delta-G solvation = -26947.306687 eV Core-core repulsion = 22970.738982 eV Total energy + Delta-G solvation = -3976.567705 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.82150 -41.48792 -40.50499 -38.52419 -38.05643 -35.32050 -34.06142 -33.27417 -31.48881 -30.86588 -29.72081 -28.37582 -27.78129 -24.32132 -23.39551 -23.30391 -22.89118 -21.29131 -21.11684 -19.06001 -18.41498 -18.11898 -17.98856 -17.63661 -16.94459 -16.69699 -16.41866 -16.34570 -15.97522 -15.65463 -15.44544 -15.14165 -14.82515 -14.55358 -14.36155 -14.20791 -13.98320 -13.91559 -13.74731 -13.47483 -13.19530 -12.83329 -12.77326 -12.73679 -12.61369 -12.51287 -11.90997 -11.86041 -11.80737 -11.79873 -11.50057 -11.06969 -10.76919 -10.63715 -10.53902 -10.01908 -9.82955 -9.05072 -8.17895 -6.11812 0.11103 0.21404 1.37208 1.41502 1.49996 1.78904 2.24383 2.33509 2.40607 2.67872 3.10947 3.27866 3.56704 3.72047 3.95131 4.05623 4.12731 4.16892 4.24661 4.36802 4.41547 4.43739 4.48321 4.51503 4.71224 4.71929 4.74681 4.85965 4.89962 4.97216 5.07955 5.09750 5.11634 5.18895 5.23158 5.25826 5.29067 5.54966 5.60070 5.71263 5.73152 5.76415 5.83116 6.35027 6.36461 6.74537 6.93712 7.42835 7.46601 8.92779 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.019136 B = 0.002931 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.895126 B = 9549.375762 C =10512.696213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.327 6.327 3 C 0.123 3.877 4 C -0.182 4.182 5 C -0.112 4.112 6 C 0.038 3.962 7 F -0.150 7.150 8 C -0.111 4.111 9 C -0.086 4.086 10 C -0.086 4.086 11 C 0.512 3.488 12 O -0.584 6.584 13 N -0.715 5.715 14 C 0.168 3.832 15 H 0.050 0.950 16 C -0.105 4.105 17 C -0.016 4.016 18 C -0.499 4.499 19 C 0.026 3.974 20 N -0.928 5.928 21 Si 0.938 3.062 22 H -0.269 1.269 23 H -0.291 1.291 24 H -0.262 1.262 25 C 0.008 3.992 26 C -0.100 4.100 27 H 0.077 0.923 28 H 0.058 0.942 29 H 0.114 0.886 30 H 0.164 0.836 31 H 0.160 0.840 32 H 0.150 0.850 33 H 0.133 0.867 34 H 0.127 0.873 35 H 0.413 0.587 36 H 0.038 0.962 37 H 0.058 0.942 38 H 0.031 0.969 39 H 0.008 0.992 40 H 0.264 0.736 41 H 0.034 0.966 42 H -0.006 1.006 43 H 0.059 0.941 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.211 13.132 18.795 25.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.241 6.241 3 C 0.077 3.923 4 C -0.200 4.200 5 C -0.131 4.131 6 C 0.019 3.981 7 F -0.129 7.129 8 C -0.129 4.129 9 C -0.088 4.088 10 C -0.125 4.125 11 C 0.300 3.700 12 O -0.463 6.463 13 N -0.366 5.366 14 C 0.063 3.937 15 H 0.068 0.932 16 C -0.144 4.144 17 C -0.054 4.054 18 C -0.519 4.519 19 C -0.172 4.172 20 N -0.567 5.567 21 Si 0.765 3.235 22 H -0.195 1.195 23 H -0.217 1.217 24 H -0.186 1.186 25 C -0.030 4.030 26 C -0.138 4.138 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.133 0.867 30 H 0.182 0.818 31 H 0.177 0.823 32 H 0.167 0.833 33 H 0.151 0.849 34 H 0.145 0.855 35 H 0.250 0.750 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.050 0.950 39 H 0.027 0.973 40 H 0.073 0.927 41 H 0.053 0.947 42 H 0.013 0.987 43 H 0.078 0.922 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.366 13.247 18.083 25.601 hybrid contribution 0.850 0.256 -0.753 1.164 sum -11.515 13.503 17.331 24.805 Atomic orbital electron populations 1.23373 0.76378 1.05594 1.02398 1.86072 1.23478 1.26321 1.88205 1.19033 0.91923 0.85325 0.95972 1.21338 1.01678 0.90598 1.06432 1.21186 0.92275 0.99756 0.99876 1.17713 0.91678 0.80329 1.08404 1.91461 1.83565 1.43250 1.94584 1.21001 1.01354 0.90183 1.00401 1.18642 0.90928 0.94567 1.04619 1.20544 1.02995 0.95797 0.93179 1.21080 0.77000 0.80081 0.91887 1.90686 1.50200 1.57594 1.47848 1.46110 1.54298 1.26780 1.09385 1.20557 0.97143 0.94106 0.81859 0.93213 1.21775 0.97843 0.97264 0.97542 1.19722 0.96728 0.95222 0.93728 1.20578 1.10440 0.90814 1.30034 1.25540 0.99361 0.95588 0.96745 1.69944 1.34315 1.09177 1.43291 0.85843 0.79813 0.79244 0.78642 1.19472 1.21713 1.18636 1.19297 0.94253 0.97379 0.92040 1.21687 1.00372 0.92923 0.98805 0.90425 0.92350 0.86745 0.81821 0.82273 0.83258 0.84863 0.85537 0.75035 0.94374 0.92334 0.95028 0.97326 0.92686 0.94713 0.98733 0.92224 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.33 -7.01 9.63 -92.94 -0.90 -7.90 16 3 C 0.12 2.76 6.66 22.49 0.15 2.91 16 4 C -0.18 -3.30 9.04 22.36 0.20 -3.10 16 5 C -0.11 -2.10 10.02 22.30 0.22 -1.88 16 6 C 0.04 0.86 7.30 22.37 0.16 1.03 16 7 F -0.15 -3.59 17.27 44.97 0.78 -2.82 16 8 C -0.11 -2.52 9.66 22.30 0.22 -2.30 16 9 C -0.09 -2.01 4.39 -19.77 -0.09 -2.09 16 10 C -0.09 -1.74 5.55 29.10 0.16 -1.58 16 11 C 0.51 15.41 7.78 87.66 0.68 16.09 16 12 O -0.58 -23.38 15.70 -3.02 -0.05 -23.42 16 13 N -0.71 -20.77 5.07 -442.67 -2.25 -23.02 16 14 C 0.17 6.43 2.35 44.96 0.11 6.54 16 15 H 0.05 2.20 7.58 -2.39 -0.02 2.18 16 16 C -0.11 -4.36 5.50 30.66 0.17 -4.19 16 17 C -0.02 -0.76 5.59 30.11 0.17 -0.59 16 18 C -0.50 -26.51 5.51 -16.17 -0.09 -26.60 16 19 C 0.03 1.44 5.46 84.65 0.46 1.90 16 20 N -0.93 -53.96 12.73 21.45 0.27 -53.69 16 21 Si 0.94 43.65 27.27 68.60 1.87 45.52 16 22 H -0.27 -12.06 7.11 99.48 0.71 -11.36 16 23 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 24 H -0.26 -11.84 6.46 99.48 0.64 -11.19 16 25 C 0.01 0.41 5.97 30.10 0.18 0.59 16 26 C -0.10 -3.93 5.40 30.66 0.17 -3.77 16 27 H 0.08 0.62 7.66 -2.39 -0.02 0.60 16 28 H 0.06 0.72 7.66 -2.38 -0.02 0.70 16 29 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.16 1.92 6.30 -2.91 -0.02 1.90 16 31 H 0.16 2.10 8.06 -2.91 -0.02 2.08 16 32 H 0.15 2.94 8.06 -2.91 -0.02 2.91 16 33 H 0.13 1.84 8.05 -2.39 -0.02 1.83 16 34 H 0.13 2.08 7.69 -2.38 -0.02 2.06 16 35 H 0.41 8.92 8.60 -92.70 -0.80 8.12 16 36 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.06 2.32 8.14 -2.38 -0.02 2.31 16 38 H 0.03 1.48 4.78 -2.39 -0.01 1.47 16 39 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.26 14.60 8.31 -92.72 -0.77 13.83 16 41 H 0.03 1.89 7.07 -2.38 -0.02 1.87 16 42 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 43 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 44 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 Total: -1.00 -71.31 361.14 3.88 -67.43 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.17 Total: 13.60 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: 3.98 Total: -15.70 kcal Atomic # 7 Polarization: -74.74 SS G_CDS: -1.97 Total: -76.71 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -0.94 Total: -31.33 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.78 Total: -2.82 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.87 Total: 45.52 kcal Total: -71.31 3.88 -67.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001181694792.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.750 kcal (2) G-P(sol) polarization free energy of solvation -71.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds