Wall clock time and date at job start Tue Mar 31 2020 13:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35793 * 117.00269 * 2 1 4 4 C 1.39140 * 119.99846 * 180.02562 * 3 2 1 5 5 C 1.39904 * 117.81725 * 180.02562 * 4 3 2 6 6 C 1.47842 * 121.15882 * 179.97438 * 5 4 3 7 7 O 1.21551 * 119.99988 * 179.97438 * 6 5 4 8 8 N 1.34776 * 120.00268 * 0.02562 * 6 5 4 9 9 C 1.46491 * 120.00197 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.35558 * 324.81981 * 9 8 6 11 11 C 1.52951 * 109.41713 * 84.64383 * 9 8 6 12 12 C 1.53228 * 109.40999 * 183.70456 * 11 9 8 13 13 C 1.51276 * 108.53512 * 305.37424 * 12 11 9 14 14 C 1.37871 * 120.84883 * 231.32177 * 13 12 11 15 15 N 1.31521 * 120.00151 * 0.02562 * 14 13 12 16 16 Si 1.86802 * 119.99997 * 180.02562 * 14 13 12 17 17 H 1.48495 * 109.47150 * 90.00201 * 16 14 13 18 18 H 1.48499 * 109.47205 * 210.00298 * 16 14 13 19 19 H 1.48499 * 109.47171 * 329.99863 * 16 14 13 20 20 C 1.51269 * 118.29876 * 51.34590 * 13 12 11 21 21 C 1.52963 * 109.41344 * 204.99903 * 9 8 6 22 22 C 1.40551 * 117.67827 * 0.24860 * 5 4 3 23 23 O 1.35533 * 120.18483 * 179.74780 * 22 5 4 24 24 C 1.42901 * 117.00328 * 179.97438 * 23 22 5 25 25 N 1.32284 * 119.62596 * 359.48993 * 22 5 4 26 26 N 1.28268 * 122.31697 * 0.53133 * 25 22 5 27 27 H 1.08995 * 109.47255 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47201 * 299.99734 * 1 2 3 29 29 H 1.09001 * 109.46797 * 59.99948 * 1 2 3 30 30 H 1.07995 * 121.09207 * 0.04382 * 4 3 2 31 31 H 0.96998 * 119.99487 * 359.97438 * 8 6 5 32 32 H 1.08999 * 109.48657 * 63.72470 * 11 9 8 33 33 H 1.09003 * 109.48507 * 303.68491 * 11 9 8 34 34 H 1.08991 * 109.63157 * 185.65714 * 12 11 9 35 35 H 1.09003 * 109.62578 * 65.08228 * 12 11 9 36 36 H 0.97003 * 119.99821 * 180.02562 * 15 14 13 37 37 H 1.08995 * 109.62532 * 68.36794 * 20 13 12 38 38 H 1.09000 * 109.62052 * 188.74748 * 20 13 12 39 39 H 1.08997 * 109.48191 * 56.31295 * 21 9 8 40 40 H 1.08997 * 109.49004 * 296.28157 * 21 9 8 41 41 H 1.09000 * 109.47749 * 180.02562 * 24 23 22 42 42 H 1.08998 * 109.47210 * 300.00742 * 24 23 22 43 43 H 1.09005 * 109.46831 * 59.99797 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2099 0.0000 4 6 3.4351 1.2826 -0.0005 5 6 4.0224 2.5524 0.0000 6 6 5.4917 2.7156 0.0001 7 8 5.9796 3.8289 0.0001 8 7 6.2904 1.6299 -0.0009 9 6 7.7464 1.7917 -0.0003 10 1 8.0128 2.6677 -0.5917 11 6 8.2364 1.9799 1.4363 12 6 9.7462 2.2413 1.4291 13 6 10.4256 1.1154 0.6812 14 6 11.4860 0.4342 1.2401 15 7 11.9190 0.7602 2.4384 16 14 12.3079 -0.9519 0.2952 17 1 13.4160 -0.4019 -0.5263 18 1 12.8494 -1.9502 1.2519 19 1 11.3118 -1.6055 -0.5912 20 6 9.9120 0.7565 -0.6956 21 6 8.3962 0.5490 -0.6113 22 6 3.1668 3.6675 0.0065 23 8 3.6814 4.9213 0.0125 24 6 2.7499 6.0049 0.0184 25 7 1.8564 3.4863 0.0016 26 7 1.3256 2.3186 0.0010 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 4.0403 0.3882 -0.0017 31 1 5.9011 0.7415 -0.0014 32 1 8.0262 1.0793 2.0131 33 1 7.7227 2.8289 1.8873 34 1 10.1167 2.2762 2.4535 35 1 9.9515 3.1884 0.9301 36 1 12.6653 0.2811 2.8314 37 1 10.1327 1.5662 -1.3911 38 1 10.3915 -0.1607 -1.0375 39 1 7.9957 0.3838 -1.6114 40 1 8.1821 -0.3179 0.0138 41 1 3.2923 6.9504 0.0224 42 1 2.1229 5.9499 -0.8715 43 1 2.1238 5.9410 0.9084 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189079086.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:58 Heat of formation + Delta-G solvation = -52.319164 kcal Electronic energy + Delta-G solvation = -27140.711058 eV Core-core repulsion = 23187.526214 eV Total energy + Delta-G solvation = -3953.184844 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.78329 -39.67885 -39.17578 -37.93864 -36.78622 -34.17610 -33.38406 -31.50324 -31.32459 -29.66992 -28.11334 -27.77408 -27.27746 -25.13375 -24.06059 -22.26427 -21.71734 -20.52198 -19.74595 -19.13346 -18.56860 -18.15189 -16.88791 -16.77210 -16.01639 -15.97995 -15.54096 -15.18352 -14.79993 -14.61671 -14.46861 -14.31591 -13.99393 -13.70675 -13.16934 -12.88775 -12.48297 -12.33977 -12.26975 -12.12365 -12.07003 -12.03378 -11.65014 -11.38693 -11.09394 -10.85937 -10.78930 -10.46494 -10.35721 -10.22101 -9.95953 -9.67635 -9.51920 -9.14539 -8.90412 -8.84085 -8.50375 -8.35729 -6.11591 -4.03479 -0.01889 0.70573 2.44210 2.73986 2.76260 3.13287 3.25004 3.32172 3.33731 3.43534 3.70972 3.94914 4.35194 4.40817 4.51767 4.76638 4.88995 4.94832 5.04694 5.12010 5.14691 5.16164 5.30064 5.36066 5.46410 5.62489 5.82083 6.10453 6.39863 6.43659 6.62921 6.63639 6.71590 6.75199 6.86360 6.99765 7.05270 7.17645 7.35815 7.61815 7.66596 7.76929 7.84771 8.21638 8.33655 8.37082 8.95176 9.51820 10.97782 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017972 B = 0.003070 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.583475 B = 9118.142792 C =10214.353963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.298 6.298 3 C 0.229 3.771 4 C -0.067 4.067 5 C -0.107 4.107 6 C 0.556 3.444 7 O -0.501 6.501 8 N -0.714 5.714 9 C 0.155 3.845 10 H 0.082 0.918 11 C -0.115 4.115 12 C 0.012 3.988 13 C -0.490 4.490 14 C 0.076 3.924 15 N -0.889 5.889 16 Si 0.887 3.113 17 H -0.278 1.278 18 H -0.290 1.290 19 H -0.264 1.264 20 C -0.017 4.017 21 C -0.113 4.113 22 C 0.282 3.718 23 O -0.262 6.262 24 C 0.030 3.970 25 N -0.269 5.269 26 N -0.252 5.252 27 H 0.102 0.898 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.168 0.832 31 H 0.392 0.608 32 H 0.050 0.950 33 H 0.036 0.964 34 H 0.059 0.941 35 H 0.007 0.993 36 H 0.264 0.736 37 H 0.020 0.980 38 H 0.039 0.961 39 H 0.038 0.962 40 H 0.057 0.943 41 H 0.104 0.896 42 H 0.061 0.939 43 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.565 -0.016 -5.273 22.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.203 6.203 3 C 0.042 3.958 4 C -0.097 4.097 5 C -0.122 4.122 6 C 0.339 3.661 7 O -0.376 6.376 8 N -0.365 5.365 9 C 0.053 3.947 10 H 0.100 0.900 11 C -0.154 4.154 12 C -0.026 4.026 13 C -0.509 4.509 14 C -0.127 4.127 15 N -0.526 5.526 16 Si 0.715 3.285 17 H -0.204 1.204 18 H -0.217 1.217 19 H -0.190 1.190 20 C -0.055 4.055 21 C -0.151 4.151 22 C 0.094 3.906 23 O -0.164 6.164 24 C -0.065 4.065 25 N -0.127 5.127 26 N -0.110 5.110 27 H 0.120 0.880 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.186 0.814 31 H 0.226 0.774 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.025 0.975 36 H 0.074 0.926 37 H 0.038 0.962 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.076 0.924 41 H 0.122 0.878 42 H 0.080 0.920 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.123 1.299 -5.127 22.747 hybrid contribution 1.049 -1.755 -0.347 2.074 sum -21.074 -0.456 -5.474 21.778 Atomic orbital electron populations 1.23003 0.76534 1.03641 1.02806 1.86272 1.23302 1.22504 1.88220 1.21074 0.90303 0.87154 0.97257 1.21708 0.92695 0.98192 0.97095 1.20639 0.96282 0.90940 1.04317 1.17556 0.84259 0.85726 0.78592 1.90864 1.74860 1.24073 1.47770 1.46347 1.08568 1.07776 1.73817 1.21165 0.74948 0.99722 0.98909 0.89985 1.21978 1.00236 0.99437 0.93708 1.19349 0.88939 0.94925 0.99377 1.20052 1.14496 1.16811 0.99498 1.24860 0.96237 0.96914 0.94676 1.69845 1.26340 1.41347 1.15084 0.86684 0.79669 0.82401 0.79705 1.20402 1.21669 1.18968 1.19772 0.90791 0.97450 0.97530 1.21861 0.99467 0.96112 0.97701 1.21354 0.89604 0.87270 0.92355 1.86572 1.33580 1.10239 1.85985 1.23083 0.93430 0.87557 1.02465 1.72902 1.08759 1.14345 1.16723 1.72560 1.31305 0.93626 1.13502 0.88000 0.91909 0.91941 0.81415 0.77353 0.93123 0.94554 0.92277 0.97509 0.92567 0.96183 0.94307 0.94282 0.92418 0.87789 0.92011 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.24 10.40 101.05 1.05 1.29 16 2 O -0.30 -2.90 10.49 -19.09 -0.20 -3.10 16 3 C 0.23 2.60 7.57 -17.06 -0.13 2.47 16 4 C -0.07 -0.73 9.63 -38.62 -0.37 -1.10 16 5 C -0.11 -1.46 5.93 -104.47 -0.62 -2.08 16 6 C 0.56 9.08 7.75 -12.33 -0.10 8.98 16 7 O -0.50 -10.09 14.97 -15.88 -0.24 -10.33 16 8 N -0.71 -10.84 5.03 -54.80 -0.28 -11.12 16 9 C 0.15 2.91 2.35 -67.98 -0.16 2.75 16 10 H 0.08 1.71 7.57 -51.93 -0.39 1.31 16 11 C -0.11 -2.45 5.50 -26.64 -0.15 -2.60 16 12 C 0.01 0.30 5.97 -27.48 -0.16 0.14 16 13 C -0.49 -12.56 5.51 -98.92 -0.55 -13.11 16 14 C 0.08 2.03 5.46 -17.82 -0.10 1.93 16 15 N -0.89 -25.27 12.73 55.43 0.71 -24.56 16 16 Si 0.89 20.42 27.53 -169.99 -4.68 15.74 16 17 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.26 -5.78 6.11 56.52 0.35 -5.43 16 20 C -0.02 -0.39 5.59 -27.48 -0.15 -0.54 16 21 C -0.11 -2.09 5.40 -26.63 -0.14 -2.24 16 22 C 0.28 4.02 7.59 -16.49 -0.13 3.90 16 23 O -0.26 -3.83 8.71 -39.49 -0.34 -4.18 16 24 C 0.03 0.30 10.40 101.05 1.05 1.35 16 25 N -0.27 -3.61 10.39 30.73 0.32 -3.30 16 26 N -0.25 -3.17 10.36 30.47 0.32 -2.85 16 27 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.42 8.11 -51.93 -0.42 0.00 16 29 H 0.06 0.41 8.11 -51.93 -0.42 -0.01 16 30 H 0.17 1.32 6.60 -52.49 -0.35 0.98 16 31 H 0.39 4.61 6.78 -40.82 -0.28 4.33 16 32 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.06 1.62 7.07 -51.93 -0.37 1.25 16 35 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.04 0.85 4.59 -51.93 -0.24 0.61 16 39 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.56 8.11 -51.93 -0.42 0.14 16 43 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 LS Contribution 354.11 15.07 5.34 5.34 Total: -1.00 -31.82 354.11 -5.59 -37.41 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: -5.88 Total: -0.19 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -0.65 Total: 1.14 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 1.06 Total: -41.83 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.78 Total: -17.61 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -4.68 Total: 15.74 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -31.82 -5.59 -37.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189079086.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.911 kcal (2) G-P(sol) polarization free energy of solvation -31.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds