Wall clock time and date at job start Tue Mar 31 2020 13:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35793 * 117.00269 * 2 1 4 4 C 1.39140 * 119.99846 * 180.02562 * 3 2 1 5 5 C 1.39904 * 117.81725 * 180.02562 * 4 3 2 6 6 C 1.47842 * 121.15882 * 179.97438 * 5 4 3 7 7 O 1.21551 * 119.99988 * 179.97438 * 6 5 4 8 8 N 1.34776 * 120.00268 * 0.02562 * 6 5 4 9 9 C 1.46491 * 120.00197 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.35558 * 324.81981 * 9 8 6 11 11 C 1.52951 * 109.41713 * 84.64383 * 9 8 6 12 12 C 1.53228 * 109.40999 * 183.70456 * 11 9 8 13 13 C 1.51276 * 108.53512 * 305.37424 * 12 11 9 14 14 C 1.37871 * 120.84883 * 231.32177 * 13 12 11 15 15 N 1.31521 * 120.00151 * 0.02562 * 14 13 12 16 16 Si 1.86802 * 119.99997 * 180.02562 * 14 13 12 17 17 H 1.48495 * 109.47150 * 90.00201 * 16 14 13 18 18 H 1.48499 * 109.47205 * 210.00298 * 16 14 13 19 19 H 1.48499 * 109.47171 * 329.99863 * 16 14 13 20 20 C 1.51269 * 118.29876 * 51.34590 * 13 12 11 21 21 C 1.52963 * 109.41344 * 204.99903 * 9 8 6 22 22 C 1.40551 * 117.67827 * 0.24860 * 5 4 3 23 23 O 1.35533 * 120.18483 * 179.74780 * 22 5 4 24 24 C 1.42901 * 117.00328 * 179.97438 * 23 22 5 25 25 N 1.32284 * 119.62596 * 359.48993 * 22 5 4 26 26 N 1.28268 * 122.31697 * 0.53133 * 25 22 5 27 27 H 1.08995 * 109.47255 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47201 * 299.99734 * 1 2 3 29 29 H 1.09001 * 109.46797 * 59.99948 * 1 2 3 30 30 H 1.07995 * 121.09207 * 0.04382 * 4 3 2 31 31 H 0.96998 * 119.99487 * 359.97438 * 8 6 5 32 32 H 1.08999 * 109.48657 * 63.72470 * 11 9 8 33 33 H 1.09003 * 109.48507 * 303.68491 * 11 9 8 34 34 H 1.08991 * 109.63157 * 185.65714 * 12 11 9 35 35 H 1.09003 * 109.62578 * 65.08228 * 12 11 9 36 36 H 0.97003 * 119.99821 * 180.02562 * 15 14 13 37 37 H 1.08995 * 109.62532 * 68.36794 * 20 13 12 38 38 H 1.09000 * 109.62052 * 188.74748 * 20 13 12 39 39 H 1.08997 * 109.48191 * 56.31295 * 21 9 8 40 40 H 1.08997 * 109.49004 * 296.28157 * 21 9 8 41 41 H 1.09000 * 109.47749 * 180.02562 * 24 23 22 42 42 H 1.08998 * 109.47210 * 300.00742 * 24 23 22 43 43 H 1.09005 * 109.46831 * 59.99797 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2099 0.0000 4 6 3.4351 1.2826 -0.0005 5 6 4.0224 2.5524 0.0000 6 6 5.4917 2.7156 0.0001 7 8 5.9796 3.8289 0.0001 8 7 6.2904 1.6299 -0.0009 9 6 7.7464 1.7917 -0.0003 10 1 8.0128 2.6677 -0.5917 11 6 8.2364 1.9799 1.4363 12 6 9.7462 2.2413 1.4291 13 6 10.4256 1.1154 0.6812 14 6 11.4860 0.4342 1.2401 15 7 11.9190 0.7602 2.4384 16 14 12.3079 -0.9519 0.2952 17 1 13.4160 -0.4019 -0.5263 18 1 12.8494 -1.9502 1.2519 19 1 11.3118 -1.6055 -0.5912 20 6 9.9120 0.7565 -0.6956 21 6 8.3962 0.5490 -0.6113 22 6 3.1668 3.6675 0.0065 23 8 3.6814 4.9213 0.0125 24 6 2.7499 6.0049 0.0184 25 7 1.8564 3.4863 0.0016 26 7 1.3256 2.3186 0.0010 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 4.0403 0.3882 -0.0017 31 1 5.9011 0.7415 -0.0014 32 1 8.0262 1.0793 2.0131 33 1 7.7227 2.8289 1.8873 34 1 10.1167 2.2762 2.4535 35 1 9.9515 3.1884 0.9301 36 1 12.6653 0.2811 2.8314 37 1 10.1327 1.5662 -1.3911 38 1 10.3915 -0.1607 -1.0375 39 1 7.9957 0.3838 -1.6114 40 1 8.1821 -0.3179 0.0138 41 1 3.2923 6.9504 0.0224 42 1 2.1229 5.9499 -0.8715 43 1 2.1238 5.9410 0.9084 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189079086.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:57 Heat of formation + Delta-G solvation = -77.165908 kcal Electronic energy + Delta-G solvation = -27141.788494 eV Core-core repulsion = 23187.526214 eV Total energy + Delta-G solvation = -3954.262280 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.74520 -40.88420 -40.17236 -38.80713 -38.41275 -35.58485 -34.71522 -33.19732 -32.23816 -31.45071 -29.36769 -28.68095 -28.35047 -26.16134 -25.03229 -23.89894 -23.44754 -21.85333 -21.36574 -20.09529 -19.50725 -19.25550 -18.13038 -17.78414 -17.60813 -16.88100 -16.80184 -16.35294 -16.01384 -15.92572 -15.74048 -15.30105 -15.04426 -14.88018 -14.76769 -14.56566 -14.07215 -13.93663 -13.45295 -13.22821 -13.00570 -12.82382 -12.79942 -12.77710 -12.69455 -12.55358 -12.21485 -11.97272 -11.82234 -11.50891 -11.30015 -11.28311 -10.98191 -10.74947 -10.65211 -10.49421 -9.97549 -9.78073 -8.13192 -6.09513 -0.99599 -0.22957 1.44732 1.46026 1.55080 1.60040 1.61255 1.87128 1.94612 2.36140 2.44612 2.78522 3.04150 3.14844 3.45045 3.56279 3.85611 4.02145 4.16675 4.23647 4.36594 4.36861 4.40436 4.44413 4.51456 4.57791 4.70823 4.74000 4.81421 4.86629 5.00961 5.06516 5.11223 5.24242 5.28708 5.55333 5.60366 5.67608 5.78022 5.83589 5.86635 5.95584 6.35461 6.48018 6.97251 7.11604 7.26965 7.49058 8.98040 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.017972 B = 0.003070 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.583475 B = 9118.142792 C =10214.353963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.298 6.298 3 C 0.231 3.769 4 C -0.042 4.042 5 C -0.123 4.123 6 C 0.560 3.440 7 O -0.546 6.546 8 N -0.699 5.699 9 C 0.167 3.833 10 H 0.061 0.939 11 C -0.103 4.103 12 C 0.009 3.991 13 C -0.499 4.499 14 C 0.018 3.982 15 N -0.936 5.936 16 Si 0.946 3.054 17 H -0.279 1.279 18 H -0.296 1.296 19 H -0.237 1.237 20 C -0.022 4.022 21 C -0.105 4.105 22 C 0.271 3.729 23 O -0.290 6.290 24 C 0.025 3.975 25 N -0.275 5.275 26 N -0.260 5.260 27 H 0.132 0.868 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.203 0.797 31 H 0.414 0.586 32 H 0.052 0.948 33 H 0.027 0.973 34 H 0.023 0.977 35 H -0.010 1.010 36 H 0.262 0.738 37 H 0.019 0.981 38 H 0.047 0.953 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.120 0.880 42 H 0.069 0.931 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.681 -2.548 -7.044 24.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.202 6.202 3 C 0.043 3.957 4 C -0.072 4.072 5 C -0.138 4.138 6 C 0.345 3.655 7 O -0.423 6.423 8 N -0.351 5.351 9 C 0.064 3.936 10 H 0.079 0.921 11 C -0.142 4.142 12 C -0.029 4.029 13 C -0.518 4.518 14 C -0.180 4.180 15 N -0.576 5.576 16 Si 0.772 3.228 17 H -0.205 1.205 18 H -0.222 1.222 19 H -0.160 1.160 20 C -0.060 4.060 21 C -0.143 4.143 22 C 0.083 3.917 23 O -0.192 6.192 24 C -0.069 4.069 25 N -0.134 5.134 26 N -0.118 5.118 27 H 0.150 0.850 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.220 0.780 31 H 0.252 0.748 32 H 0.071 0.929 33 H 0.046 0.954 34 H 0.042 0.958 35 H 0.008 0.992 36 H 0.071 0.929 37 H 0.038 0.962 38 H 0.066 0.934 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.139 0.861 42 H 0.088 0.912 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -24.298 -1.266 -6.921 25.296 hybrid contribution 1.591 -0.911 0.241 1.849 sum -22.707 -2.177 -6.679 23.769 Atomic orbital electron populations 1.23291 0.74895 1.05686 1.02797 1.86294 1.24875 1.21284 1.87763 1.21194 0.90578 0.87383 0.96496 1.21997 0.92899 0.98089 0.94246 1.20355 0.94444 0.92152 1.06846 1.17845 0.85341 0.85062 0.77288 1.90847 1.75915 1.25841 1.49724 1.45965 1.06900 1.08816 1.73426 1.20739 0.77068 0.99478 0.96358 0.92083 1.21771 0.97373 0.99046 0.95982 1.19291 0.91837 0.94618 0.97201 1.20647 1.14058 1.16033 1.01087 1.25724 0.97086 0.99704 0.95479 1.70012 1.27317 1.43102 1.17160 0.85731 0.79050 0.79446 0.78579 1.20522 1.22233 1.16026 1.19804 0.93461 0.97697 0.95034 1.21736 0.96693 0.95825 1.00025 1.21520 0.90004 0.87422 0.92774 1.86540 1.35386 1.11172 1.86096 1.23309 0.93433 0.87114 1.03084 1.72918 1.08333 1.14873 1.17279 1.72500 1.31726 0.93885 1.13674 0.84989 0.92018 0.91867 0.78038 0.74848 0.92918 0.95415 0.95806 0.99155 0.92895 0.96244 0.93439 0.90580 0.91265 0.86146 0.91236 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.40 113.37 1.18 1.47 16 2 O -0.30 -4.77 10.49 -91.23 -0.96 -5.73 16 3 C 0.23 4.59 7.57 84.86 0.64 5.23 16 4 C -0.04 -0.78 9.63 22.89 0.22 -0.56 16 5 C -0.12 -3.17 5.93 -19.77 -0.12 -3.29 16 6 C 0.56 17.63 7.75 86.79 0.67 18.31 16 7 O -0.55 -22.19 14.97 16.39 0.25 -21.94 16 8 N -0.70 -19.47 5.03 -445.57 -2.24 -21.71 16 9 C 0.17 6.03 2.35 44.96 0.11 6.14 16 10 H 0.06 2.51 7.57 -2.39 -0.02 2.49 16 11 C -0.10 -4.42 5.50 30.65 0.17 -4.25 16 12 C 0.01 0.45 5.97 30.11 0.18 0.63 16 13 C -0.50 -25.63 5.51 -16.17 -0.09 -25.72 16 14 C 0.02 0.96 5.46 84.65 0.46 1.43 16 15 N -0.94 -54.94 12.73 21.45 0.27 -54.67 16 16 Si 0.95 41.33 27.53 68.60 1.89 43.22 16 17 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 18 H -0.30 -13.06 7.11 99.48 0.71 -12.36 16 19 H -0.24 -9.19 6.11 99.48 0.61 -8.58 16 20 C -0.02 -0.92 5.59 30.11 0.17 -0.75 16 21 C -0.10 -3.51 5.40 30.66 0.17 -3.34 16 22 C 0.27 7.54 7.59 85.19 0.65 8.19 16 23 O -0.29 -8.52 8.71 -68.10 -0.59 -9.11 16 24 C 0.02 0.49 10.40 113.37 1.18 1.67 16 25 N -0.28 -7.13 10.39 -169.62 -1.76 -8.89 16 26 N -0.26 -6.05 10.36 -170.34 -1.76 -7.82 16 27 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.68 8.11 -2.39 -0.02 0.66 16 29 H 0.06 0.68 8.11 -2.39 -0.02 0.66 16 30 H 0.20 2.19 6.60 -2.91 -0.02 2.17 16 31 H 0.41 7.98 6.78 -92.71 -0.63 7.35 16 32 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.02 1.36 7.07 -2.39 -0.02 1.35 16 35 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 36 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 37 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.05 1.90 4.59 -2.39 -0.01 1.89 16 39 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.07 1.24 8.11 -2.39 -0.02 1.22 16 43 H 0.07 1.23 8.12 -2.38 -0.02 1.21 16 Total: -1.00 -71.76 354.11 0.99 -70.76 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.32 Total: 10.75 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: 5.58 Total: 5.14 kcal Atomic # 7 Polarization: -87.59 SS G_CDS: -5.50 Total: -93.08 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -1.30 Total: -36.78 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 1.89 Total: 43.22 kcal Total: -71.76 0.99 -70.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189079086.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.403 kcal (2) G-P(sol) polarization free energy of solvation -71.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds