Wall clock time and date at job start Tue Mar 31 2020 13:51:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35541 * 116.99699 * 2 1 4 4 C 1.39197 * 120.43992 * 180.02562 * 3 2 1 5 5 C 1.39190 * 118.41311 * 179.97438 * 4 3 2 6 6 O 1.35544 * 120.44484 * 180.02562 * 5 4 3 7 7 C 1.42899 * 117.00197 * 179.97438 * 6 5 4 8 8 N 1.32748 * 119.11176 * 0.02562 * 5 4 3 9 9 C 1.32425 * 120.81121 * 359.97438 * 8 5 4 10 10 C 1.48558 * 119.13001 * 180.02562 * 9 8 5 11 11 O 1.21469 * 119.99733 * 0.02562 * 10 9 8 12 12 N 1.34769 * 119.99857 * 180.27737 * 10 9 8 13 13 C 1.46502 * 119.99819 * 179.72514 * 12 10 9 14 14 H 1.09002 * 109.41488 * 34.99735 * 13 12 10 15 15 C 1.52960 * 109.41351 * 154.85898 * 13 12 10 16 16 C 1.53230 * 109.40606 * 183.70324 * 15 13 12 17 17 C 1.51269 * 108.53642 * 305.37432 * 16 15 13 18 18 C 1.37875 * 120.84866 * 231.32390 * 17 16 15 19 19 N 1.31515 * 120.00349 * 164.54973 * 18 17 16 20 20 Si 1.86802 * 120.00201 * 344.55037 * 18 17 16 21 21 H 1.48507 * 109.46933 * 354.63841 * 20 18 17 22 22 H 1.48501 * 109.47161 * 114.63535 * 20 18 17 23 23 H 1.48500 * 109.47096 * 234.64194 * 20 18 17 24 24 C 1.51268 * 118.30112 * 51.34655 * 17 16 15 25 25 C 1.52963 * 109.41342 * 275.13792 * 13 12 10 26 26 N 1.32418 * 121.74005 * 0.28066 * 9 8 5 27 27 H 1.08994 * 109.47236 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46556 * 299.99537 * 1 2 3 29 29 H 1.08998 * 109.46903 * 59.99871 * 1 2 3 30 30 H 1.08003 * 120.79314 * 359.95725 * 4 3 2 31 31 H 1.08999 * 109.47544 * 179.97438 * 7 6 5 32 32 H 1.08994 * 109.47368 * 300.00267 * 7 6 5 33 33 H 1.09006 * 109.46951 * 60.00254 * 7 6 5 34 34 H 0.96995 * 120.00116 * 359.72250 * 12 10 9 35 35 H 1.09000 * 109.47885 * 303.68176 * 15 13 12 36 36 H 1.08995 * 109.48415 * 63.71016 * 15 13 12 37 37 H 1.09002 * 109.62551 * 65.08513 * 16 15 13 38 38 H 1.08999 * 109.63036 * 185.46307 * 16 15 13 39 39 H 0.96999 * 120.00682 * 180.02562 * 19 18 17 40 40 H 1.08996 * 109.63066 * 68.37058 * 24 17 16 41 41 H 1.09008 * 109.62304 * 188.74962 * 24 17 16 42 42 H 1.08994 * 109.48725 * 296.27553 * 25 13 12 43 43 H 1.09002 * 109.47941 * 56.31686 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0444 1.2077 0.0000 4 6 3.4338 1.2913 -0.0005 5 6 4.0214 2.5531 -0.0011 6 8 5.3707 2.6824 -0.0021 7 6 5.8950 4.0117 -0.0032 8 7 3.2427 3.6282 -0.0005 9 6 1.9237 3.5103 0.0000 10 6 1.0879 4.7384 0.0000 11 8 1.6159 5.8324 -0.0009 12 7 -0.2561 4.6389 0.0062 13 6 -1.0803 5.8500 0.0123 14 1 -0.5907 6.6244 -0.5782 15 6 -2.4489 5.5367 -0.5947 16 6 -3.2776 6.8232 -0.6733 17 6 -3.3343 7.4436 0.7052 18 6 -4.5396 7.8047 1.2689 19 7 -4.6144 8.0536 2.5581 20 14 -6.0666 7.9405 0.2015 21 1 -5.6949 7.7394 -1.2222 22 1 -7.0485 6.9032 0.6079 23 1 -6.6702 9.2868 0.3700 24 6 -2.0348 7.6583 1.4491 25 6 -1.2527 6.3404 1.4509 26 7 1.3301 2.3266 0.0055 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 4.0415 0.3984 -0.0003 31 1 6.9843 3.9727 -0.0035 32 1 5.5497 4.5378 -0.8931 33 1 5.5510 4.5387 0.8869 34 1 -0.6777 3.7653 0.0066 35 1 -2.3172 5.1274 -1.5963 36 1 -2.9658 4.8088 0.0305 37 1 -2.8084 7.5190 -1.3689 38 1 -4.2860 6.5890 -1.0142 39 1 -5.4624 8.3072 2.9548 40 1 -1.4506 8.4313 0.9500 41 1 -2.2458 7.9633 2.4741 42 1 -1.7987 5.5932 2.0268 43 1 -0.2727 6.5011 1.9001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189231192.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:55 Heat of formation + Delta-G solvation = -62.485266 kcal Electronic energy + Delta-G solvation = -27087.483917 eV Core-core repulsion = 23133.858237 eV Total energy + Delta-G solvation = -3953.625680 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.75466 -39.52371 -39.48764 -37.96894 -36.69454 -33.92165 -32.91323 -32.29203 -31.42969 -29.62994 -28.29783 -27.80049 -27.03201 -25.42745 -23.45102 -22.30910 -21.68663 -20.69776 -19.70290 -19.03507 -18.79727 -17.14071 -16.87431 -16.79324 -16.04889 -16.02901 -15.86090 -15.61334 -15.02844 -14.90185 -14.39680 -14.35607 -13.89938 -13.68033 -13.15921 -12.85878 -12.45754 -12.22950 -12.21538 -12.12894 -12.04136 -11.72136 -11.58645 -11.35357 -11.01739 -10.89168 -10.79093 -10.26749 -9.99494 -9.94882 -9.91816 -9.84562 -9.55069 -9.33500 -9.12782 -8.89660 -8.43003 -8.29737 -6.14015 -3.99626 0.27542 0.87107 2.13391 2.69406 2.82066 2.98805 3.24611 3.35657 3.37757 3.66541 3.69071 4.21674 4.37373 4.57521 4.75761 4.95328 5.02602 5.03015 5.09042 5.10457 5.13363 5.17961 5.37324 5.51328 5.65291 5.86770 6.14672 6.39949 6.44610 6.48716 6.58053 6.69052 6.75517 6.78405 6.80524 7.03976 7.09569 7.18974 7.38412 7.50246 7.64867 7.74247 7.82979 7.89492 8.37629 8.38988 8.96055 9.53184 10.95661 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018751 B = 0.003041 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.863058 B = 9204.488954 C =10206.766978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.295 6.295 3 C 0.387 3.613 4 C -0.255 4.255 5 C 0.385 3.615 6 O -0.295 6.295 7 C 0.035 3.965 8 N -0.543 5.543 9 C 0.372 3.628 10 C 0.577 3.423 11 O -0.502 6.502 12 N -0.696 5.696 13 C 0.153 3.847 14 H 0.082 0.918 15 C -0.111 4.111 16 C -0.011 4.011 17 C -0.495 4.495 18 C 0.080 3.920 19 N -0.881 5.881 20 Si 0.879 3.121 21 H -0.261 1.261 22 H -0.284 1.284 23 H -0.286 1.286 24 C 0.012 3.988 25 C -0.113 4.113 26 N -0.569 5.569 27 H 0.103 0.897 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.162 0.838 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.404 0.596 35 H 0.039 0.961 36 H 0.058 0.942 37 H 0.017 0.983 38 H 0.036 0.964 39 H 0.264 0.736 40 H 0.006 0.994 41 H 0.057 0.943 42 H 0.052 0.948 43 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.972 -15.964 -5.509 21.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.199 6.199 3 C 0.203 3.797 4 C -0.279 4.279 5 C 0.200 3.800 6 O -0.200 6.200 7 C -0.060 4.060 8 N -0.277 5.277 9 C 0.101 3.899 10 C 0.356 3.644 11 O -0.374 6.374 12 N -0.347 5.347 13 C 0.051 3.949 14 H 0.100 0.900 15 C -0.150 4.150 16 C -0.049 4.049 17 C -0.514 4.514 18 C -0.123 4.123 19 N -0.518 5.518 20 Si 0.707 3.293 21 H -0.186 1.186 22 H -0.210 1.210 23 H -0.212 1.212 24 C -0.026 4.026 25 C -0.152 4.152 26 N -0.306 5.306 27 H 0.121 0.879 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.180 0.820 31 H 0.120 0.880 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.239 0.761 35 H 0.057 0.943 36 H 0.077 0.923 37 H 0.035 0.965 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.024 0.976 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 14.048 -14.798 -5.347 21.093 hybrid contribution -0.741 -0.930 -0.386 1.250 sum 13.307 -15.728 -5.734 21.385 Atomic orbital electron populations 1.23082 0.75782 1.03808 1.03456 1.86237 1.23979 1.23107 1.86610 1.19553 0.88508 0.84815 0.86874 1.20758 0.92755 0.98315 1.16107 1.19606 0.84974 0.88449 0.86935 1.86223 1.14751 1.32399 1.86579 1.23063 0.98787 0.80440 1.03686 1.67954 1.06216 1.32346 1.21212 1.22554 0.86956 0.90908 0.89487 1.17203 0.82510 0.85674 0.78975 1.90816 1.72544 1.25866 1.48170 1.46252 1.04578 1.11827 1.72005 1.21223 0.90192 0.84489 0.98999 0.90023 1.21853 0.94512 1.00915 0.97718 1.19705 0.95569 0.92338 0.97301 1.20000 0.91853 1.40416 0.99101 1.24820 0.98218 0.94835 0.94464 1.69917 1.26172 1.45703 1.10022 0.86783 0.83006 0.77728 0.81827 1.18575 1.20996 1.21187 1.19363 0.93112 0.90942 0.99167 1.21958 0.98518 1.01128 0.93602 1.68042 1.41206 0.98367 1.22998 0.87899 0.91366 0.91490 0.82012 0.87955 0.91449 0.91403 0.76088 0.94262 0.92300 0.96470 0.94507 0.92641 0.97591 0.92400 0.92912 0.94705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 10.41 101.05 1.05 1.30 16 2 O -0.30 -2.94 10.49 -18.32 -0.19 -3.13 16 3 C 0.39 4.53 7.52 -16.80 -0.13 4.40 16 4 C -0.26 -2.79 10.09 -38.87 -0.39 -3.18 16 5 C 0.39 4.83 7.52 -16.80 -0.13 4.70 16 6 O -0.30 -3.21 10.49 -18.33 -0.19 -3.40 16 7 C 0.03 0.31 10.41 101.05 1.05 1.36 16 8 N -0.54 -8.15 9.06 -11.24 -0.10 -8.25 16 9 C 0.37 5.73 7.60 -157.13 -1.19 4.54 16 10 C 0.58 10.19 7.82 -12.01 -0.09 10.09 16 11 O -0.50 -10.49 16.52 5.39 0.09 -10.40 16 12 N -0.70 -11.54 5.06 -54.56 -0.28 -11.81 16 13 C 0.15 2.97 2.35 -67.97 -0.16 2.81 16 14 H 0.08 1.72 7.57 -51.93 -0.39 1.33 16 15 C -0.11 -2.12 5.40 -26.63 -0.14 -2.26 16 16 C -0.01 -0.25 5.46 -27.49 -0.15 -0.40 16 17 C -0.49 -12.73 5.44 -98.92 -0.54 -13.27 16 18 C 0.08 2.14 5.43 -17.82 -0.10 2.04 16 19 N -0.88 -24.94 12.81 55.43 0.71 -24.23 16 20 Si 0.88 20.34 27.63 -169.99 -4.70 15.64 16 21 H -0.26 -5.79 6.14 56.52 0.35 -5.45 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 24 C 0.01 0.30 6.00 -27.48 -0.16 0.14 16 25 C -0.11 -2.48 5.50 -26.62 -0.15 -2.62 16 26 N -0.57 -7.52 8.51 -11.24 -0.10 -7.62 16 27 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 29 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 30 H 0.16 1.35 8.06 -52.48 -0.42 0.93 16 31 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.64 8.12 -51.93 -0.42 0.21 16 33 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 34 H 0.40 5.76 7.90 -40.82 -0.32 5.44 16 35 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.04 0.81 5.03 -51.93 -0.26 0.55 16 39 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.01 0.14 8.14 -51.93 -0.42 -0.28 16 41 H 0.06 1.59 7.11 -51.92 -0.37 1.22 16 42 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 359.46 15.07 5.42 5.42 Total: -1.00 -30.68 359.46 -6.60 -37.27 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -6.03 Total: 0.86 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: -1.23 Total: 9.66 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: 0.24 Total: -51.91 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: -0.30 Total: -16.94 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.70 Total: 15.64 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.68 -6.60 -37.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189231192.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.211 kcal (2) G-P(sol) polarization free energy of solvation -30.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds