Wall clock time and date at job start Tue Mar 31 2020 13:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.35541 * 116.99699 * 2 1 4 4 C 1.39197 * 120.43992 * 180.02562 * 3 2 1 5 5 C 1.39190 * 118.41311 * 179.97438 * 4 3 2 6 6 O 1.35544 * 120.44484 * 180.02562 * 5 4 3 7 7 C 1.42899 * 117.00197 * 179.97438 * 6 5 4 8 8 N 1.32748 * 119.11176 * 0.02562 * 5 4 3 9 9 C 1.32425 * 120.81121 * 359.97438 * 8 5 4 10 10 C 1.48558 * 119.13001 * 180.02562 * 9 8 5 11 11 O 1.21469 * 119.99733 * 0.02562 * 10 9 8 12 12 N 1.34769 * 119.99857 * 180.27737 * 10 9 8 13 13 C 1.46502 * 119.99819 * 179.72514 * 12 10 9 14 14 H 1.09002 * 109.41488 * 34.99735 * 13 12 10 15 15 C 1.52960 * 109.41351 * 154.85898 * 13 12 10 16 16 C 1.53230 * 109.40606 * 183.70324 * 15 13 12 17 17 C 1.51269 * 108.53642 * 305.37432 * 16 15 13 18 18 C 1.37875 * 120.84866 * 231.32390 * 17 16 15 19 19 N 1.31515 * 120.00349 * 164.54973 * 18 17 16 20 20 Si 1.86802 * 120.00201 * 344.55037 * 18 17 16 21 21 H 1.48507 * 109.46933 * 354.63841 * 20 18 17 22 22 H 1.48501 * 109.47161 * 114.63535 * 20 18 17 23 23 H 1.48500 * 109.47096 * 234.64194 * 20 18 17 24 24 C 1.51268 * 118.30112 * 51.34655 * 17 16 15 25 25 C 1.52963 * 109.41342 * 275.13792 * 13 12 10 26 26 N 1.32418 * 121.74005 * 0.28066 * 9 8 5 27 27 H 1.08994 * 109.47236 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46556 * 299.99537 * 1 2 3 29 29 H 1.08998 * 109.46903 * 59.99871 * 1 2 3 30 30 H 1.08003 * 120.79314 * 359.95725 * 4 3 2 31 31 H 1.08999 * 109.47544 * 179.97438 * 7 6 5 32 32 H 1.08994 * 109.47368 * 300.00267 * 7 6 5 33 33 H 1.09006 * 109.46951 * 60.00254 * 7 6 5 34 34 H 0.96995 * 120.00116 * 359.72250 * 12 10 9 35 35 H 1.09000 * 109.47885 * 303.68176 * 15 13 12 36 36 H 1.08995 * 109.48415 * 63.71016 * 15 13 12 37 37 H 1.09002 * 109.62551 * 65.08513 * 16 15 13 38 38 H 1.08999 * 109.63036 * 185.46307 * 16 15 13 39 39 H 0.96999 * 120.00682 * 180.02562 * 19 18 17 40 40 H 1.08996 * 109.63066 * 68.37058 * 24 17 16 41 41 H 1.09008 * 109.62304 * 188.74962 * 24 17 16 42 42 H 1.08994 * 109.48725 * 296.27553 * 25 13 12 43 43 H 1.09002 * 109.47941 * 56.31686 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0444 1.2077 0.0000 4 6 3.4338 1.2913 -0.0005 5 6 4.0214 2.5531 -0.0011 6 8 5.3707 2.6824 -0.0021 7 6 5.8950 4.0117 -0.0032 8 7 3.2427 3.6282 -0.0005 9 6 1.9237 3.5103 0.0000 10 6 1.0879 4.7384 0.0000 11 8 1.6159 5.8324 -0.0009 12 7 -0.2561 4.6389 0.0062 13 6 -1.0803 5.8500 0.0123 14 1 -0.5907 6.6244 -0.5782 15 6 -2.4489 5.5367 -0.5947 16 6 -3.2776 6.8232 -0.6733 17 6 -3.3343 7.4436 0.7052 18 6 -4.5396 7.8047 1.2689 19 7 -4.6144 8.0536 2.5581 20 14 -6.0666 7.9405 0.2015 21 1 -5.6949 7.7394 -1.2222 22 1 -7.0485 6.9032 0.6079 23 1 -6.6702 9.2868 0.3700 24 6 -2.0348 7.6583 1.4491 25 6 -1.2527 6.3404 1.4509 26 7 1.3301 2.3266 0.0055 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5138 -0.8900 30 1 4.0415 0.3984 -0.0003 31 1 6.9843 3.9727 -0.0035 32 1 5.5497 4.5378 -0.8931 33 1 5.5510 4.5387 0.8869 34 1 -0.6777 3.7653 0.0066 35 1 -2.3172 5.1274 -1.5963 36 1 -2.9658 4.8088 0.0305 37 1 -2.8084 7.5190 -1.3689 38 1 -4.2860 6.5890 -1.0142 39 1 -5.4624 8.3072 2.9548 40 1 -1.4506 8.4313 0.9500 41 1 -2.2458 7.9633 2.4741 42 1 -1.7987 5.5932 2.0268 43 1 -0.2727 6.5011 1.9001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189231192.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:54 Heat of formation + Delta-G solvation = -86.364486 kcal Electronic energy + Delta-G solvation = -27088.519397 eV Core-core repulsion = 23133.858237 eV Total energy + Delta-G solvation = -3954.661160 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.74650 -40.89820 -40.29718 -38.98009 -38.29993 -35.53835 -34.07833 -33.51490 -32.90238 -31.44839 -29.43241 -28.98560 -27.90368 -26.60192 -24.38477 -23.93524 -23.46797 -22.08662 -21.34682 -20.20666 -19.74528 -18.45961 -17.82079 -17.75037 -17.64040 -17.08274 -16.82580 -16.72203 -16.30870 -16.19430 -15.91524 -15.35731 -15.14961 -14.97772 -14.81183 -14.50106 -14.02753 -13.88136 -13.47477 -13.11339 -12.91170 -12.85150 -12.79015 -12.71323 -12.63330 -12.44421 -12.38124 -11.89403 -11.78461 -11.37970 -11.29970 -10.96695 -10.91276 -10.88989 -10.77923 -10.39875 -10.21521 -9.96495 -8.16405 -6.05931 -0.77904 -0.07523 1.27215 1.41596 1.46200 1.47876 1.57294 1.64751 2.08807 2.44860 2.57015 2.74036 3.02811 3.14413 3.60751 3.85761 3.99351 4.14974 4.21936 4.35751 4.36994 4.42908 4.45579 4.46332 4.49137 4.73665 4.75426 4.84848 4.84925 5.00357 5.05224 5.08768 5.22662 5.29735 5.44999 5.51022 5.59685 5.66460 5.74927 5.75190 5.85243 5.95624 6.28389 6.38157 6.68703 6.97141 7.03229 7.49468 8.95402 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018751 B = 0.003041 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.863058 B = 9204.488954 C =10206.766978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.292 6.292 3 C 0.381 3.619 4 C -0.237 4.237 5 C 0.374 3.626 6 O -0.293 6.293 7 C 0.032 3.968 8 N -0.564 5.564 9 C 0.358 3.642 10 C 0.578 3.422 11 O -0.542 6.542 12 N -0.683 5.683 13 C 0.165 3.835 14 H 0.066 0.934 15 C -0.103 4.103 16 C -0.015 4.015 17 C -0.505 4.505 18 C 0.025 3.975 19 N -0.927 5.927 20 Si 0.939 3.061 21 H -0.241 1.241 22 H -0.280 1.280 23 H -0.292 1.292 24 C 0.009 3.991 25 C -0.101 4.101 26 N -0.564 5.564 27 H 0.133 0.867 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.192 0.808 31 H 0.139 0.861 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.418 0.582 35 H 0.074 0.926 36 H 0.065 0.935 37 H 0.019 0.981 38 H 0.045 0.955 39 H 0.263 0.737 40 H -0.004 1.004 41 H 0.024 0.976 42 H 0.048 0.952 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.279 -18.832 -7.332 24.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.196 6.196 3 C 0.197 3.803 4 C -0.261 4.261 5 C 0.190 3.810 6 O -0.197 6.197 7 C -0.062 4.062 8 N -0.299 5.299 9 C 0.086 3.914 10 C 0.360 3.640 11 O -0.417 6.417 12 N -0.334 5.334 13 C 0.062 3.938 14 H 0.084 0.916 15 C -0.141 4.141 16 C -0.053 4.053 17 C -0.524 4.524 18 C -0.174 4.174 19 N -0.566 5.566 20 Si 0.764 3.236 21 H -0.164 1.164 22 H -0.206 1.206 23 H -0.219 1.219 24 C -0.029 4.029 25 C -0.140 4.140 26 N -0.302 5.302 27 H 0.151 0.849 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.209 0.791 31 H 0.157 0.843 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.256 0.744 35 H 0.092 0.908 36 H 0.084 0.916 37 H 0.037 0.963 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.014 0.986 41 H 0.042 0.958 42 H 0.067 0.933 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 14.361 -17.726 -7.192 23.920 hybrid contribution -0.718 -0.085 0.227 0.757 sum 13.643 -17.811 -6.966 23.492 Atomic orbital electron populations 1.23348 0.74390 1.05801 1.03252 1.86272 1.25308 1.21760 1.86214 1.19748 0.88967 0.84882 0.86689 1.21072 0.92786 0.98672 1.13543 1.19847 0.85455 0.88480 0.87221 1.86244 1.13753 1.33288 1.86365 1.23241 1.00762 0.79552 1.02617 1.67832 1.06345 1.34025 1.21743 1.21881 0.86928 0.90604 0.91975 1.17495 0.82672 0.86090 0.77770 1.90790 1.73298 1.27695 1.49899 1.45940 1.04256 1.11543 1.71658 1.20856 0.91040 0.85270 0.96673 0.91604 1.21725 0.93167 0.99391 0.99808 1.19741 0.96800 0.93700 0.95051 1.20564 0.91601 1.39620 1.00646 1.25647 1.01431 0.94915 0.95415 1.70056 1.26848 1.47766 1.11891 0.85827 0.79345 0.77224 0.81185 1.16399 1.20575 1.21914 1.19310 0.94030 0.92408 0.97142 1.21760 0.97339 0.99299 0.95640 1.67949 1.41325 0.98165 1.22740 0.84911 0.91819 0.91408 0.79093 0.84340 0.92373 0.92614 0.74399 0.90773 0.91636 0.96273 0.93656 0.92823 0.98552 0.95770 0.93340 0.95451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.41 113.37 1.18 1.50 16 2 O -0.29 -4.94 10.49 -88.46 -0.93 -5.86 16 3 C 0.38 8.01 7.52 84.79 0.64 8.64 16 4 C -0.24 -4.57 10.09 22.73 0.23 -4.34 16 5 C 0.37 8.82 7.52 84.78 0.64 9.46 16 6 O -0.29 -5.85 10.49 -88.49 -0.93 -6.78 16 7 C 0.03 0.54 10.41 113.37 1.18 1.72 16 8 N -0.56 -16.67 9.06 -302.16 -2.74 -19.41 16 9 C 0.36 10.77 7.60 137.71 1.05 11.82 16 10 C 0.58 20.34 7.82 87.00 0.68 21.02 16 11 O -0.54 -23.13 16.52 -3.62 -0.06 -23.19 16 12 N -0.68 -21.91 5.06 -444.85 -2.25 -24.17 16 13 C 0.17 6.29 2.35 44.97 0.11 6.40 16 14 H 0.07 2.77 7.57 -2.39 -0.02 2.75 16 15 C -0.10 -3.65 5.40 30.66 0.17 -3.48 16 16 C -0.01 -0.63 5.46 30.11 0.16 -0.47 16 17 C -0.51 -26.12 5.44 -16.17 -0.09 -26.21 16 18 C 0.02 1.34 5.43 84.65 0.46 1.80 16 19 N -0.93 -54.03 12.81 21.45 0.27 -53.75 16 20 Si 0.94 41.51 27.63 68.60 1.90 43.41 16 21 H -0.24 -9.74 6.14 99.48 0.61 -9.13 16 22 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 23 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 24 C 0.01 0.48 6.00 30.11 0.18 0.66 16 25 C -0.10 -4.52 5.50 30.66 0.17 -4.35 16 26 N -0.56 -13.97 8.51 -302.16 -2.57 -16.54 16 27 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.85 8.12 -2.39 -0.02 0.83 16 29 H 0.07 0.83 8.12 -2.39 -0.02 0.81 16 30 H 0.19 2.48 8.06 -2.91 -0.02 2.46 16 31 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 1.07 8.12 -2.39 -0.02 1.05 16 33 H 0.06 1.06 8.12 -2.38 -0.02 1.04 16 34 H 0.42 11.10 7.90 -92.71 -0.73 10.37 16 35 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 36 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.04 1.86 5.03 -2.39 -0.01 1.84 16 39 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 40 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 41 H 0.02 1.38 7.11 -2.38 -0.02 1.36 16 42 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -68.21 359.46 -0.34 -68.55 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: 0.22 Total: 13.59 kcal Atomic # 6 Polarization: 17.41 SS G_CDS: 6.75 Total: 24.15 kcal Atomic # 7 Polarization: -106.59 SS G_CDS: -7.29 Total: -113.87 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -1.92 Total: -35.83 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 1.90 Total: 43.41 kcal Total: -68.21 -0.34 -68.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189231192.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.810 kcal (2) G-P(sol) polarization free energy of solvation -68.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds