Wall clock time and date at job start Tue Mar 31 2020 13:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36930 * 119.99834 * 2 1 4 4 H 1.08000 * 120.00462 * 203.26558 * 3 2 1 5 5 C 1.38814 * 120.00491 * 23.26334 * 3 2 1 6 6 N 1.31626 * 119.99355 * 13.81557 * 5 3 2 7 7 Si 1.86799 * 120.00456 * 193.81587 * 5 3 2 8 8 H 1.48499 * 109.47022 * 60.00006 * 7 5 3 9 9 H 1.48503 * 109.47270 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47368 * 299.99939 * 7 5 3 11 11 C 1.46494 * 120.00208 * 180.02562 * 2 1 3 12 12 H 1.08993 * 110.88930 * 183.88054 * 11 2 1 13 13 C 1.55156 * 111.03399 * 307.78218 * 11 2 1 14 14 C 1.54339 * 103.02339 * 153.39553 * 13 11 2 15 15 N 1.47030 * 107.26053 * 338.13993 * 14 13 11 16 16 C 1.34777 * 125.64250 * 178.84948 * 15 14 13 17 17 O 1.21283 * 119.99686 * 179.41818 * 16 15 14 18 18 C 1.50697 * 120.00491 * 359.69047 * 16 15 14 19 19 N 1.46497 * 109.47349 * 180.02562 * 18 16 15 20 20 C 1.34773 * 120.00288 * 180.02562 * 19 18 16 21 21 O 1.21617 * 119.99718 * 359.97438 * 20 19 18 22 22 C 1.47375 * 120.00362 * 180.02562 * 20 19 18 23 23 C 1.47022 * 127.19450 * 179.97438 * 22 20 19 24 24 C 1.34178 * 105.95305 * 179.97438 * 23 22 20 25 25 O 1.34215 * 109.12817 * 0.02562 * 24 23 22 26 26 C 1.33657 * 110.90427 * 359.72145 * 25 24 23 27 27 C 1.47421 * 108.70285 * 358.58382 * 15 14 13 28 28 H 1.09001 * 109.46687 * 275.15757 * 1 2 3 29 29 H 1.09002 * 109.47234 * 35.15504 * 1 2 3 30 30 H 1.08997 * 109.47263 * 155.16004 * 1 2 3 31 31 H 0.97006 * 119.99133 * 180.02562 * 6 5 3 32 32 H 1.09002 * 110.72318 * 271.95396 * 13 11 2 33 33 H 1.09000 * 110.72176 * 35.22945 * 13 11 2 34 34 H 1.09000 * 109.99448 * 218.66826 * 14 13 11 35 35 H 1.08997 * 109.77791 * 97.49403 * 14 13 11 36 36 H 1.09003 * 109.47185 * 300.00283 * 18 16 15 37 37 H 1.08995 * 109.46828 * 59.99722 * 18 16 15 38 38 H 0.96999 * 119.99775 * 359.97438 * 19 18 16 39 39 H 1.07999 * 127.02286 * 359.97438 * 23 22 20 40 40 H 1.08007 * 125.43844 * 179.97438 * 24 23 22 41 41 H 1.07995 * 125.80074 * 180.28908 * 26 25 24 42 42 H 1.09006 * 110.36658 * 143.19453 * 27 15 14 43 43 H 1.08993 * 110.36842 * 265.51668 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1638 1.2240 -0.3694 5 6 1.5403 2.3392 0.4748 6 7 0.4248 2.2562 1.1686 7 14 2.3032 4.0089 0.1291 8 1 2.3820 4.2229 -1.3383 9 1 1.4652 5.0720 0.7396 10 1 3.6686 4.0592 0.7107 11 6 2.1975 -1.2687 -0.0006 12 1 3.2717 -1.0972 0.0684 13 6 1.7077 -2.1951 1.1436 14 6 2.0205 -3.6074 0.6056 15 7 2.1185 -3.5050 -0.8579 16 6 2.4021 -4.5192 -1.6990 17 8 2.4470 -4.3209 -2.8946 18 6 2.6574 -5.9009 -1.1543 19 7 2.9413 -6.8175 -2.2613 20 6 3.2011 -8.1161 -2.0113 21 8 3.2004 -8.5269 -0.8666 22 6 3.4872 -9.0381 -3.1249 23 6 3.7897 -10.4740 -3.0346 24 6 3.9780 -10.8912 -4.2958 25 8 3.8198 -9.8525 -5.1310 26 6 3.5211 -8.7386 -4.4554 27 6 1.8489 -2.1106 -1.2533 28 1 -0.3633 0.0924 1.0235 29 1 -0.3634 0.8402 -0.5917 30 1 -0.3633 -0.9326 -0.4317 31 1 -0.0012 3.0622 1.5000 32 1 2.2604 -1.9987 2.0623 33 1 0.6361 -2.0762 1.3041 34 1 1.2193 -4.2952 0.8761 35 1 2.9672 -3.9575 1.0169 36 1 3.5119 -5.8728 -0.4781 37 1 1.7769 -6.2463 -0.6127 38 1 2.9414 -6.4899 -3.1743 39 1 3.8484 -11.0710 -2.1365 40 1 4.2192 -11.9016 -4.5918 41 1 3.3399 -7.7663 -4.8889 42 1 2.4842 -1.8244 -2.0915 43 1 0.7977 -1.9865 -1.5132 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190317936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:37 Heat of formation + Delta-G solvation = -18.537217 kcal Electronic energy + Delta-G solvation = -26205.492692 eV Core-core repulsion = 22253.772743 eV Total energy + Delta-G solvation = -3951.719949 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.90162 -40.30525 -39.28451 -37.60300 -34.92786 -34.66285 -33.21850 -31.82313 -30.51725 -29.90616 -28.75586 -27.16730 -26.09532 -24.09523 -23.09430 -22.37723 -21.83371 -20.46769 -19.63747 -19.40177 -18.62680 -17.15144 -17.05557 -16.55454 -16.37727 -16.19853 -16.03479 -15.47264 -15.26262 -14.65459 -14.50532 -14.10688 -13.54307 -13.46881 -13.44458 -13.27147 -12.99403 -12.77773 -12.60405 -12.54726 -12.31764 -12.00318 -11.42295 -10.99149 -10.83055 -10.57900 -10.55589 -10.38618 -10.33084 -10.19709 -10.03836 -9.94377 -9.85793 -9.46686 -9.18420 -8.66116 -8.51390 -6.86973 -5.81963 -3.29892 0.97920 1.70789 2.48816 2.51366 2.63183 3.07313 3.22485 3.34651 3.40470 3.41774 4.21658 4.29692 4.35186 4.42093 4.70462 4.93031 5.06411 5.07242 5.18886 5.23454 5.28527 5.30914 5.45967 5.50153 5.53105 5.67064 5.82409 5.89070 5.92873 5.99860 6.17891 6.29918 6.39488 6.55114 6.55561 6.69173 6.79591 7.20261 7.26830 7.55109 7.63361 7.72679 7.91117 8.05001 8.29639 9.12780 9.74963 10.23319 11.22506 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.034997 B = 0.002070 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.874735 B =13523.310503 C =13948.826306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.584 5.584 3 C -0.263 4.263 4 H 0.070 0.930 5 C 0.006 3.994 6 N -0.904 5.904 7 Si 0.907 3.093 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.282 1.282 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.151 4.151 14 C 0.097 3.903 15 N -0.605 5.605 16 C 0.520 3.480 17 O -0.548 6.548 18 C 0.106 3.894 19 N -0.714 5.714 20 C 0.590 3.410 21 O -0.537 6.537 22 C -0.236 4.236 23 C -0.164 4.164 24 C -0.042 4.042 25 O -0.174 6.174 26 C 0.026 3.974 27 C 0.085 3.915 28 H 0.035 0.965 29 H 0.042 0.958 30 H 0.002 0.998 31 H 0.254 0.746 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.410 0.590 39 H 0.160 0.840 40 H 0.210 0.790 41 H 0.214 0.786 42 H 0.074 0.926 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.693 -22.831 -7.333 24.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.304 5.304 3 C -0.393 4.393 4 H 0.087 0.913 5 C -0.193 4.193 6 N -0.548 5.548 7 Si 0.737 3.263 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.208 1.208 11 C 0.062 3.938 12 H 0.097 0.903 13 C -0.191 4.191 14 C -0.027 4.027 15 N -0.339 5.339 16 C 0.308 3.692 17 O -0.427 6.427 18 C -0.021 4.021 19 N -0.369 5.369 20 C 0.378 3.622 21 O -0.415 6.415 22 C -0.241 4.241 23 C -0.184 4.184 24 C -0.108 4.108 25 O -0.069 6.069 26 C -0.044 4.044 27 C -0.040 4.040 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.020 0.980 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.247 0.753 39 H 0.178 0.822 40 H 0.226 0.774 41 H 0.230 0.770 42 H 0.092 0.908 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.623 -22.886 -7.397 24.492 hybrid contribution 0.223 1.110 -0.171 1.145 sum 4.846 -21.776 -7.568 23.557 Atomic orbital electron populations 1.20823 0.82431 0.95626 0.99729 1.43802 1.01855 0.99825 1.84936 1.19161 0.98721 0.85282 1.36090 0.91271 1.25040 0.97921 0.98659 0.97704 1.70061 1.19978 1.27582 1.37149 0.86299 0.78434 0.83521 0.78053 1.20972 1.21596 1.20832 1.21409 0.96523 0.85896 0.89935 0.90255 1.23229 1.03005 0.92306 1.00561 1.22198 1.01116 0.99867 0.79484 1.48409 1.67834 1.09821 1.07786 1.20001 0.77320 0.85683 0.86210 1.90675 1.53268 1.83786 1.15002 1.21047 1.03870 0.87114 0.90066 1.45538 1.72186 1.08125 1.11090 1.17208 0.76351 0.80857 0.87832 1.90800 1.51871 1.76876 1.21940 1.21458 1.13708 0.95647 0.93248 1.22787 1.04300 0.92848 0.98422 1.23981 1.06322 0.92246 0.88211 1.83814 1.67923 1.16673 1.38449 1.24582 0.98848 0.90543 0.90447 1.23105 1.01449 0.78637 1.00768 0.94690 0.93955 0.97980 0.93553 0.90228 0.90393 0.91570 0.91371 0.88169 0.88212 0.75268 0.82195 0.77393 0.76979 0.90765 0.91160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.66 7.57 59.85 0.45 4.11 16 2 N -0.58 -13.70 2.96 -171.04 -0.51 -14.21 16 3 C -0.26 -6.90 9.60 -15.06 -0.14 -7.05 16 4 H 0.07 1.77 7.87 -52.49 -0.41 1.36 16 5 C 0.01 0.16 5.08 -17.43 -0.09 0.07 16 6 N -0.90 -25.34 10.77 55.49 0.60 -24.74 16 7 Si 0.91 21.22 29.58 -169.99 -5.03 16.20 16 8 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 9 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 11 C 0.17 3.25 3.53 -65.78 -0.23 3.02 16 12 H 0.08 1.51 7.96 -51.93 -0.41 1.10 16 13 C -0.15 -2.35 6.50 -24.89 -0.16 -2.51 16 14 C 0.10 1.19 6.49 -3.05 -0.02 1.17 16 15 N -0.61 -8.75 3.33 -170.51 -0.57 -9.32 16 16 C 0.52 7.29 7.92 -10.99 -0.09 7.20 16 17 O -0.55 -9.12 15.93 5.55 0.09 -9.03 16 18 C 0.11 1.20 5.35 -5.20 -0.03 1.17 16 19 N -0.71 -7.83 5.52 -62.58 -0.35 -8.18 16 20 C 0.59 7.14 7.81 -12.54 -0.10 7.04 16 21 O -0.54 -8.19 16.98 5.26 0.09 -8.10 16 22 C -0.24 -2.35 6.31 -103.28 -0.65 -3.00 16 23 C -0.16 -1.41 11.01 -37.45 -0.41 -1.82 16 24 C -0.04 -0.27 12.03 29.30 0.35 0.09 16 25 O -0.17 -1.33 10.52 7.64 0.08 -1.25 16 26 C 0.03 0.20 11.61 30.08 0.35 0.55 16 27 C 0.08 1.46 6.46 -2.53 -0.02 1.44 16 28 H 0.03 0.87 7.33 -51.93 -0.38 0.49 16 29 H 0.04 1.07 7.38 -51.93 -0.38 0.68 16 30 H 0.00 0.04 6.38 -51.93 -0.33 -0.30 16 31 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.08 1.30 7.00 -51.93 -0.36 0.93 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.41 4.06 6.41 -40.82 -0.26 3.80 16 39 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 40 H 0.21 0.49 8.06 -52.48 -0.42 0.07 16 41 H 0.21 0.96 7.47 -52.49 -0.39 0.57 16 42 H 0.07 1.36 8.04 -51.93 -0.42 0.94 16 43 H 0.07 1.28 6.42 -51.93 -0.33 0.95 16 LS Contribution 361.58 15.07 5.45 5.45 Total: -1.00 -33.08 361.58 -6.71 -39.79 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -5.78 Total: 1.90 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: -0.79 Total: 11.49 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: -0.82 Total: -56.44 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: 0.26 Total: -18.38 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.20 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.08 -6.71 -39.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190317936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.256 kcal (2) G-P(sol) polarization free energy of solvation -33.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds