Wall clock time and date at job start Tue Mar 31 2020 13:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36930 * 119.99834 * 2 1 4 4 H 1.08000 * 120.00462 * 203.26558 * 3 2 1 5 5 C 1.38814 * 120.00491 * 23.26334 * 3 2 1 6 6 N 1.31626 * 119.99355 * 13.81557 * 5 3 2 7 7 Si 1.86799 * 120.00456 * 193.81587 * 5 3 2 8 8 H 1.48499 * 109.47022 * 60.00006 * 7 5 3 9 9 H 1.48503 * 109.47270 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.47368 * 299.99939 * 7 5 3 11 11 C 1.46494 * 120.00208 * 180.02562 * 2 1 3 12 12 H 1.08993 * 110.88930 * 183.88054 * 11 2 1 13 13 C 1.55156 * 111.03399 * 307.78218 * 11 2 1 14 14 C 1.54339 * 103.02339 * 153.39553 * 13 11 2 15 15 N 1.47030 * 107.26053 * 338.13993 * 14 13 11 16 16 C 1.34777 * 125.64250 * 178.84948 * 15 14 13 17 17 O 1.21283 * 119.99686 * 179.41818 * 16 15 14 18 18 C 1.50697 * 120.00491 * 359.69047 * 16 15 14 19 19 N 1.46497 * 109.47349 * 180.02562 * 18 16 15 20 20 C 1.34773 * 120.00288 * 180.02562 * 19 18 16 21 21 O 1.21617 * 119.99718 * 359.97438 * 20 19 18 22 22 C 1.47375 * 120.00362 * 180.02562 * 20 19 18 23 23 C 1.47022 * 127.19450 * 179.97438 * 22 20 19 24 24 C 1.34178 * 105.95305 * 179.97438 * 23 22 20 25 25 O 1.34215 * 109.12817 * 0.02562 * 24 23 22 26 26 C 1.33657 * 110.90427 * 359.72145 * 25 24 23 27 27 C 1.47421 * 108.70285 * 358.58382 * 15 14 13 28 28 H 1.09001 * 109.46687 * 275.15757 * 1 2 3 29 29 H 1.09002 * 109.47234 * 35.15504 * 1 2 3 30 30 H 1.08997 * 109.47263 * 155.16004 * 1 2 3 31 31 H 0.97006 * 119.99133 * 180.02562 * 6 5 3 32 32 H 1.09002 * 110.72318 * 271.95396 * 13 11 2 33 33 H 1.09000 * 110.72176 * 35.22945 * 13 11 2 34 34 H 1.09000 * 109.99448 * 218.66826 * 14 13 11 35 35 H 1.08997 * 109.77791 * 97.49403 * 14 13 11 36 36 H 1.09003 * 109.47185 * 300.00283 * 18 16 15 37 37 H 1.08995 * 109.46828 * 59.99722 * 18 16 15 38 38 H 0.96999 * 119.99775 * 359.97438 * 19 18 16 39 39 H 1.07999 * 127.02286 * 359.97438 * 23 22 20 40 40 H 1.08007 * 125.43844 * 179.97438 * 24 23 22 41 41 H 1.07995 * 125.80074 * 180.28908 * 26 25 24 42 42 H 1.09006 * 110.36658 * 143.19453 * 27 15 14 43 43 H 1.08993 * 110.36842 * 265.51668 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1638 1.2240 -0.3694 5 6 1.5403 2.3392 0.4748 6 7 0.4248 2.2562 1.1686 7 14 2.3032 4.0089 0.1291 8 1 2.3820 4.2229 -1.3383 9 1 1.4652 5.0720 0.7396 10 1 3.6686 4.0592 0.7107 11 6 2.1975 -1.2687 -0.0006 12 1 3.2717 -1.0972 0.0684 13 6 1.7077 -2.1951 1.1436 14 6 2.0205 -3.6074 0.6056 15 7 2.1185 -3.5050 -0.8579 16 6 2.4021 -4.5192 -1.6990 17 8 2.4470 -4.3209 -2.8946 18 6 2.6574 -5.9009 -1.1543 19 7 2.9413 -6.8175 -2.2613 20 6 3.2011 -8.1161 -2.0113 21 8 3.2004 -8.5269 -0.8666 22 6 3.4872 -9.0381 -3.1249 23 6 3.7897 -10.4740 -3.0346 24 6 3.9780 -10.8912 -4.2958 25 8 3.8198 -9.8525 -5.1310 26 6 3.5211 -8.7386 -4.4554 27 6 1.8489 -2.1106 -1.2533 28 1 -0.3633 0.0924 1.0235 29 1 -0.3634 0.8402 -0.5917 30 1 -0.3633 -0.9326 -0.4317 31 1 -0.0012 3.0622 1.5000 32 1 2.2604 -1.9987 2.0623 33 1 0.6361 -2.0762 1.3041 34 1 1.2193 -4.2952 0.8761 35 1 2.9672 -3.9575 1.0169 36 1 3.5119 -5.8728 -0.4781 37 1 1.7769 -6.2463 -0.6127 38 1 2.9414 -6.4899 -3.1743 39 1 3.8484 -11.0710 -2.1365 40 1 4.2192 -11.9016 -4.5918 41 1 3.3399 -7.7663 -4.8889 42 1 2.4842 -1.8244 -2.0915 43 1 0.7977 -1.9865 -1.5132 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190317936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:36 Heat of formation + Delta-G solvation = -41.752878 kcal Electronic energy + Delta-G solvation = -26206.499399 eV Core-core repulsion = 22253.772743 eV Total energy + Delta-G solvation = -3952.726656 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.48447 -41.41663 -40.32393 -38.94980 -36.59906 -35.63571 -33.88169 -33.51208 -31.55915 -31.02523 -29.90748 -28.35288 -28.02217 -25.34497 -24.27483 -23.69739 -22.40202 -21.28409 -21.00519 -20.54929 -19.45337 -18.95606 -18.07030 -17.66310 -17.24904 -17.13500 -17.04638 -16.75346 -16.19943 -15.98513 -15.60389 -15.28240 -15.06170 -14.85766 -14.43298 -14.32912 -14.28601 -13.88813 -13.82666 -13.56288 -13.37545 -13.33134 -12.95432 -12.80042 -12.49731 -12.40936 -12.15643 -12.12091 -11.84843 -11.45491 -11.34609 -11.14747 -10.88068 -10.64263 -10.34989 -9.76147 -9.73953 -8.79301 -7.84329 -5.33563 0.31195 1.12963 1.40153 1.47337 1.50010 1.53891 1.57001 2.04596 2.24748 2.25492 2.51332 3.23796 3.33084 3.53145 3.60682 3.77064 3.91800 4.00300 4.09116 4.16243 4.27000 4.32099 4.35374 4.43500 4.56320 4.69007 4.75880 4.77918 4.89448 4.98913 5.00597 5.06191 5.16707 5.22629 5.30138 5.34054 5.42372 5.64313 5.71467 5.98106 6.31176 6.34927 6.42496 6.89879 7.04290 7.13303 7.83694 8.27300 9.18105 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.034997 B = 0.002070 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.874735 B =13523.310503 C =13948.826306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.601 5.601 3 C -0.268 4.268 4 H 0.071 0.929 5 C -0.048 4.048 6 N -0.933 5.933 7 Si 0.967 3.033 8 H -0.282 1.282 9 H -0.295 1.295 10 H -0.274 1.274 11 C 0.165 3.835 12 H 0.075 0.925 13 C -0.142 4.142 14 C 0.103 3.897 15 N -0.606 5.606 16 C 0.524 3.476 17 O -0.577 6.577 18 C 0.113 3.887 19 N -0.710 5.710 20 C 0.591 3.409 21 O -0.576 6.576 22 C -0.270 4.270 23 C -0.194 4.194 24 C -0.024 4.024 25 O -0.178 6.178 26 C 0.043 3.957 27 C 0.099 3.901 28 H 0.012 0.988 29 H 0.011 0.989 30 H 0.030 0.970 31 H 0.249 0.751 32 H 0.084 0.916 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.415 0.585 39 H 0.159 0.841 40 H 0.249 0.751 41 H 0.240 0.760 42 H 0.059 0.941 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.679 -24.787 -8.117 26.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.322 5.322 3 C -0.398 4.398 4 H 0.088 0.912 5 C -0.244 4.244 6 N -0.579 5.579 7 Si 0.795 3.205 8 H -0.208 1.208 9 H -0.221 1.221 10 H -0.200 1.200 11 C 0.056 3.944 12 H 0.093 0.907 13 C -0.182 4.182 14 C -0.019 4.019 15 N -0.339 5.339 16 C 0.313 3.687 17 O -0.457 6.457 18 C -0.013 4.013 19 N -0.364 5.364 20 C 0.381 3.619 21 O -0.457 6.457 22 C -0.275 4.275 23 C -0.213 4.213 24 C -0.089 4.089 25 O -0.072 6.072 26 C -0.028 4.028 27 C -0.027 4.027 28 H 0.031 0.969 29 H 0.030 0.970 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.254 0.746 39 H 0.177 0.823 40 H 0.265 0.735 41 H 0.256 0.744 42 H 0.078 0.922 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.634 -24.880 -8.197 26.794 hybrid contribution -0.047 1.634 -0.005 1.635 sum 5.588 -23.246 -8.202 25.275 Atomic orbital electron populations 1.20515 0.82642 0.95711 0.97952 1.43954 1.02022 1.00868 1.85366 1.19474 0.98811 0.86620 1.34945 0.91159 1.25750 0.98679 1.01738 0.98213 1.70210 1.21305 1.27803 1.38564 0.85350 0.77786 0.79645 0.77693 1.20786 1.22105 1.19987 1.21548 0.95927 0.84877 0.92074 0.90681 1.23064 1.02183 0.93453 0.99488 1.22301 1.03685 0.98102 0.77815 1.48398 1.67987 1.08663 1.08841 1.20413 0.76298 0.86321 0.85689 1.90666 1.54383 1.84328 1.16351 1.21044 1.04985 0.85144 0.90176 1.45518 1.71722 1.07860 1.11344 1.17484 0.75488 0.81079 0.87866 1.90770 1.53903 1.77514 1.23474 1.21493 1.16167 0.96179 0.93653 1.22965 1.06146 0.92630 0.99574 1.24672 1.03871 0.93159 0.87193 1.83855 1.67640 1.16995 1.38714 1.25019 0.96792 0.91369 0.89634 1.22676 1.00327 0.80320 0.99334 0.96925 0.96979 0.95113 0.94184 0.89737 0.91500 0.88832 0.88565 0.86866 0.86895 0.74630 0.82330 0.73546 0.74446 0.92246 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.31 7.57 127.77 0.97 9.28 16 2 N -0.60 -28.44 2.96 -695.04 -2.06 -30.49 16 3 C -0.27 -14.21 9.60 84.03 0.81 -13.40 16 4 H 0.07 3.62 7.87 -2.91 -0.02 3.59 16 5 C -0.05 -2.62 5.08 84.86 0.43 -2.19 16 6 N -0.93 -53.53 10.77 21.65 0.23 -53.30 16 7 Si 0.97 44.11 29.58 68.60 2.03 46.14 16 8 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 9 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 11 C 0.16 6.09 3.53 46.38 0.16 6.25 16 12 H 0.07 2.82 7.96 -2.39 -0.02 2.80 16 13 C -0.14 -4.18 6.50 31.79 0.21 -3.97 16 14 C 0.10 2.21 6.49 86.73 0.56 2.78 16 15 N -0.61 -16.23 3.33 -811.76 -2.70 -18.93 16 16 C 0.52 13.60 7.92 87.66 0.69 14.29 16 17 O -0.58 -18.40 15.93 -3.04 -0.05 -18.45 16 18 C 0.11 2.28 5.35 85.63 0.46 2.74 16 19 N -0.71 -14.37 5.52 -470.17 -2.59 -16.97 16 20 C 0.59 13.73 7.81 86.65 0.68 14.40 16 21 O -0.58 -17.22 16.98 -4.09 -0.07 -17.29 16 22 C -0.27 -5.07 6.31 -18.99 -0.12 -5.19 16 23 C -0.19 -3.11 11.01 23.65 0.26 -2.85 16 24 C -0.02 -0.24 12.03 66.89 0.80 0.56 16 25 O -0.18 -2.27 10.52 4.42 0.05 -2.23 16 26 C 0.04 0.56 11.61 67.39 0.78 1.34 16 27 C 0.10 3.33 6.46 86.86 0.56 3.89 16 28 H 0.01 0.64 7.33 -2.39 -0.02 0.62 16 29 H 0.01 0.60 7.38 -2.39 -0.02 0.59 16 30 H 0.03 1.23 6.38 -2.39 -0.02 1.22 16 31 H 0.25 13.97 8.31 -92.70 -0.77 13.20 16 32 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.07 2.14 7.00 -2.39 -0.02 2.12 16 34 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.42 7.51 6.41 -92.71 -0.59 6.92 16 39 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 40 H 0.25 0.27 8.06 -2.91 -0.02 0.25 16 41 H 0.24 1.55 7.47 -2.91 -0.02 1.53 16 42 H 0.06 2.17 8.04 -2.38 -0.02 2.15 16 43 H 0.06 2.13 6.42 -2.39 -0.02 2.11 16 Total: -1.00 -73.10 361.58 2.55 -70.55 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.45 Total: 13.04 kcal Atomic # 6 Polarization: 20.67 SS G_CDS: 7.26 Total: 27.93 kcal Atomic # 7 Polarization: -112.57 SS G_CDS: -7.12 Total: -119.69 kcal Atomic # 8 Polarization: -37.90 SS G_CDS: -0.07 Total: -37.97 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Total: -73.10 2.55 -70.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190317936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.801 kcal (2) G-P(sol) polarization free energy of solvation -73.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds