Wall clock time and date at job start Tue Mar 31 2020 13:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36943 * 120.00224 * 2 1 4 4 H 1.07993 * 120.00305 * 203.26060 * 3 2 1 5 5 C 1.38813 * 119.99497 * 23.26338 * 3 2 1 6 6 N 1.31618 * 120.00155 * 13.82088 * 5 3 2 7 7 Si 1.86796 * 119.99829 * 193.82262 * 5 3 2 8 8 H 1.48500 * 109.47107 * 0.02562 * 7 5 3 9 9 H 1.48495 * 109.47175 * 119.99753 * 7 5 3 10 10 H 1.48499 * 109.47392 * 240.00157 * 7 5 3 11 11 C 1.46504 * 120.00148 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.88902 * 183.87948 * 11 2 1 13 13 C 1.55396 * 111.06920 * 307.66280 * 11 2 1 14 14 C 1.54328 * 102.82943 * 153.48623 * 13 11 2 15 15 N 1.47023 * 107.39941 * 337.97877 * 14 13 11 16 16 C 1.34771 * 125.64688 * 178.89919 * 15 14 13 17 17 O 1.21278 * 120.00514 * 179.97438 * 16 15 14 18 18 C 1.50704 * 119.99920 * 359.97165 * 16 15 14 19 19 N 1.46504 * 109.47054 * 179.97438 * 18 16 15 20 20 C 1.34777 * 119.99833 * 179.97438 * 19 18 16 21 21 O 1.21691 * 120.00147 * 0.02562 * 20 19 18 22 22 C 1.46657 * 119.99949 * 180.02562 * 20 19 18 23 23 C 1.36544 * 125.99229 * 180.02562 * 22 20 19 24 24 C 1.40366 * 106.71055 * 179.97438 * 23 22 20 25 25 C 1.35130 * 107.11293 * 0.02562 * 24 23 22 26 26 O 1.33932 * 108.76940 * 359.75206 * 25 24 23 27 27 C 1.47423 * 108.70267 * 358.86299 * 15 14 13 28 28 H 1.08991 * 109.47365 * 275.15812 * 1 2 3 29 29 H 1.08999 * 109.46940 * 35.15844 * 1 2 3 30 30 H 1.09003 * 109.47061 * 155.15453 * 1 2 3 31 31 H 0.97000 * 119.99633 * 180.02562 * 6 5 3 32 32 H 1.09007 * 110.69831 * 35.19651 * 13 11 2 33 33 H 1.09001 * 110.85508 * 271.84821 * 13 11 2 34 34 H 1.09003 * 109.88241 * 218.48277 * 14 13 11 35 35 H 1.08999 * 109.88060 * 97.46928 * 14 13 11 36 36 H 1.08993 * 109.47080 * 300.00134 * 18 16 15 37 37 H 1.09007 * 109.47108 * 60.00402 * 18 16 15 38 38 H 0.96997 * 120.00064 * 0.02562 * 19 18 16 39 39 H 1.07999 * 126.63959 * 359.96225 * 23 22 20 40 40 H 1.07995 * 126.43726 * 180.02562 * 24 23 22 41 41 H 1.08000 * 125.61387 * 180.02562 * 25 24 23 42 42 H 1.08999 * 110.36556 * 142.97107 * 27 15 14 43 43 H 1.09009 * 110.36203 * 265.17666 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1638 1.2240 -0.3693 5 6 1.5402 2.3392 0.4748 6 7 0.4248 2.2562 1.1686 7 14 2.3031 4.0088 0.1290 8 1 3.5448 3.8307 -0.6657 9 1 1.3419 4.8433 -0.6358 10 1 2.6287 4.6799 1.4131 11 6 2.1975 -1.2687 -0.0006 12 1 3.2717 -1.0973 0.0684 13 6 1.7095 -2.1961 1.1469 14 6 2.0258 -3.6063 0.6058 15 7 2.1185 -3.5050 -0.8580 16 6 2.4022 -4.5191 -1.6991 17 8 2.4524 -4.3197 -2.8943 18 6 2.6571 -5.9009 -1.1545 19 7 2.9399 -6.8177 -2.2616 20 6 3.2003 -8.1163 -2.0116 21 8 3.2000 -8.5273 -0.8662 22 6 3.4839 -9.0339 -3.1198 23 6 3.7617 -10.3661 -3.0075 24 6 3.9659 -10.8470 -4.3103 25 6 3.8065 -9.8004 -5.1501 26 8 3.5111 -8.7108 -4.4295 27 6 1.8490 -2.1106 -1.2533 28 1 -0.3633 0.0924 1.0234 29 1 -0.3633 0.8402 -0.5918 30 1 -0.3633 -0.9326 -0.4318 31 1 -0.0012 3.0622 1.5001 32 1 0.6383 -2.0767 1.3096 33 1 2.2640 -2.0020 2.0651 34 1 1.2276 -4.2962 0.8799 35 1 2.9741 -3.9559 1.0140 36 1 3.5114 -5.8730 -0.4781 37 1 1.7762 -6.2464 -0.6132 38 1 2.9405 -6.4901 -3.1746 39 1 3.8143 -10.9387 -2.0934 40 1 4.2055 -11.8625 -4.5890 41 1 3.8974 -9.8375 -6.2256 42 1 2.4843 -1.8244 -2.0915 43 1 0.7981 -1.9870 -1.5152 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001193857314.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:30 Heat of formation + Delta-G solvation = -17.232834 kcal Electronic energy + Delta-G solvation = -26261.632304 eV Core-core repulsion = 22309.968917 eV Total energy + Delta-G solvation = -3951.663387 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.03135 -40.32173 -39.35241 -37.60578 -34.94119 -34.80392 -33.40573 -31.83490 -30.68444 -29.90901 -28.76378 -27.17010 -26.09218 -23.96167 -22.96472 -22.37402 -22.09449 -20.67368 -19.70387 -19.40624 -18.69925 -17.15077 -17.06897 -16.75185 -16.49897 -16.22111 -16.10037 -15.44687 -15.04171 -14.63533 -14.22551 -13.91675 -13.48222 -13.46340 -13.41430 -13.36094 -13.04147 -13.00060 -12.62822 -12.54152 -12.32170 -11.99668 -11.42337 -10.99997 -10.84227 -10.71175 -10.57302 -10.55229 -10.44683 -10.28667 -10.02485 -9.94178 -9.84249 -9.58309 -9.05009 -8.66503 -8.50697 -6.86625 -5.81878 -3.29727 0.69829 1.97628 2.25791 2.52049 2.68062 2.85134 3.21702 3.33466 3.41594 3.43479 4.28557 4.36323 4.42259 4.51630 4.65029 4.93303 5.03531 5.10312 5.20698 5.24981 5.30293 5.38272 5.46057 5.50056 5.51768 5.67250 5.81631 5.88901 5.92251 5.94481 6.19059 6.30506 6.38641 6.44807 6.55704 6.69724 6.79988 7.13591 7.27430 7.54306 7.63919 7.73649 7.73781 8.05797 8.29797 9.13058 9.75243 10.23502 11.22644 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.034975 B = 0.002091 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.377218 B =13386.180853 C =13812.437091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.158 3.842 2 N -0.584 5.584 3 C -0.261 4.261 4 H 0.071 0.929 5 C 0.005 3.995 6 N -0.903 5.903 7 Si 0.906 3.094 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.173 3.827 12 H 0.079 0.921 13 C -0.151 4.151 14 C 0.096 3.904 15 N -0.606 5.606 16 C 0.520 3.480 17 O -0.545 6.545 18 C 0.104 3.896 19 N -0.706 5.706 20 C 0.606 3.394 21 O -0.522 6.522 22 C -0.078 4.078 23 C -0.119 4.119 24 C -0.227 4.227 25 C -0.004 4.004 26 O -0.161 6.161 27 C 0.085 3.915 28 H 0.035 0.965 29 H 0.042 0.958 30 H 0.002 0.998 31 H 0.253 0.747 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.418 0.582 39 H 0.161 0.839 40 H 0.157 0.843 41 H 0.211 0.789 42 H 0.074 0.926 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.844 -23.400 -7.346 25.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.305 5.305 3 C -0.391 4.391 4 H 0.088 0.912 5 C -0.194 4.194 6 N -0.548 5.548 7 Si 0.736 3.264 8 H -0.202 1.202 9 H -0.215 1.215 10 H -0.217 1.217 11 C 0.062 3.938 12 H 0.097 0.903 13 C -0.191 4.191 14 C -0.027 4.027 15 N -0.339 5.339 16 C 0.307 3.693 17 O -0.423 6.423 18 C -0.023 4.023 19 N -0.360 5.360 20 C 0.392 3.608 21 O -0.400 6.400 22 C -0.130 4.130 23 C -0.139 4.139 24 C -0.246 4.246 25 C -0.074 4.074 26 O -0.056 6.056 27 C -0.039 4.039 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.020 0.980 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.256 0.744 39 H 0.179 0.821 40 H 0.175 0.825 41 H 0.228 0.772 42 H 0.092 0.908 43 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.688 -23.101 -7.221 24.653 hybrid contribution 0.286 0.826 -0.488 1.001 sum 4.974 -22.275 -7.708 24.090 Atomic orbital electron populations 1.20820 0.82432 0.95639 0.99730 1.43821 1.01869 0.99846 1.84915 1.19252 0.98714 0.85242 1.35873 0.91163 1.25038 0.97917 0.98669 0.97755 1.70075 1.20016 1.27352 1.37321 0.86163 0.78597 0.84070 0.77570 1.20218 1.21537 1.21667 1.21457 0.96528 0.85884 0.89907 0.90256 1.23264 1.02996 0.92325 1.00496 1.22187 1.01115 0.99897 0.79478 1.48398 1.67941 1.09813 1.07734 1.19960 0.77451 0.85657 0.86238 1.90699 1.52959 1.83686 1.14995 1.21118 1.04047 0.87258 0.89883 1.45610 1.70708 1.07915 1.11787 1.16468 0.77156 0.80881 0.86291 1.90896 1.52668 1.76724 1.19696 1.21970 1.13473 0.95643 0.81930 1.21991 0.99803 0.92785 0.99342 1.21882 1.09240 1.01057 0.92457 1.24475 1.01033 0.83743 0.98110 1.84110 1.68013 1.36535 1.16971 1.23102 1.01468 0.78605 1.00747 0.94686 0.93959 0.97967 0.93659 0.90366 0.90227 0.91601 0.91375 0.87904 0.87966 0.74364 0.82100 0.82490 0.77229 0.90764 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.67 7.58 59.84 0.45 4.12 16 2 N -0.58 -13.76 2.96 -170.89 -0.51 -14.26 16 3 C -0.26 -6.88 9.60 -15.06 -0.14 -7.02 16 4 H 0.07 1.82 7.87 -52.49 -0.41 1.40 16 5 C 0.01 0.14 5.08 -17.43 -0.09 0.05 16 6 N -0.90 -25.40 10.77 55.49 0.60 -24.81 16 7 Si 0.91 21.29 29.58 -169.99 -5.03 16.26 16 8 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 9 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 11 C 0.17 3.27 3.53 -65.65 -0.23 3.03 16 12 H 0.08 1.52 7.96 -51.93 -0.41 1.10 16 13 C -0.15 -2.34 6.53 -24.76 -0.16 -2.50 16 14 C 0.10 1.19 6.48 -3.06 -0.02 1.17 16 15 N -0.61 -8.85 3.33 -170.52 -0.57 -9.42 16 16 C 0.52 7.48 7.92 -10.99 -0.09 7.39 16 17 O -0.54 -9.50 15.92 5.56 0.09 -9.42 16 18 C 0.10 1.18 5.35 -5.19 -0.03 1.15 16 19 N -0.71 -8.30 5.52 -62.80 -0.35 -8.65 16 20 C 0.61 7.43 7.79 -12.86 -0.10 7.33 16 21 O -0.52 -7.52 16.86 5.20 0.09 -7.43 16 22 C -0.08 -0.84 7.13 -36.80 -0.26 -1.10 16 23 C -0.12 -1.08 10.62 -39.39 -0.42 -1.50 16 24 C -0.23 -1.54 10.88 -39.89 -0.43 -1.97 16 25 C 0.00 -0.02 12.08 29.63 0.36 0.34 16 26 O -0.16 -1.55 10.40 4.98 0.05 -1.50 16 27 C 0.08 1.48 6.47 -2.53 -0.02 1.47 16 28 H 0.03 0.87 7.33 -51.93 -0.38 0.49 16 29 H 0.04 1.07 7.38 -51.93 -0.38 0.69 16 30 H 0.00 0.04 6.39 -51.93 -0.33 -0.29 16 31 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 32 H 0.08 1.30 7.01 -51.93 -0.36 0.94 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.42 4.97 7.19 -40.82 -0.29 4.68 16 39 H 0.16 1.31 8.06 -52.49 -0.42 0.88 16 40 H 0.16 0.64 8.06 -52.49 -0.42 0.22 16 41 H 0.21 0.48 8.06 -52.49 -0.42 0.06 16 42 H 0.07 1.38 8.04 -51.93 -0.42 0.96 16 43 H 0.07 1.30 6.43 -51.92 -0.33 0.96 16 LS Contribution 362.47 15.07 5.46 5.46 Total: -1.00 -32.22 362.47 -7.19 -39.41 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -5.85 Total: 2.40 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: -1.18 Total: 11.95 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: -0.82 Total: -57.14 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: 0.23 Total: -18.35 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.22 -7.19 -39.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193857314.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.178 kcal (2) G-P(sol) polarization free energy of solvation -32.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds