Wall clock time and date at job start Tue Mar 31 2020 13:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36943 * 120.00224 * 2 1 4 4 H 1.07993 * 120.00305 * 203.26060 * 3 2 1 5 5 C 1.38813 * 119.99497 * 23.26338 * 3 2 1 6 6 N 1.31618 * 120.00155 * 13.82088 * 5 3 2 7 7 Si 1.86796 * 119.99829 * 193.82262 * 5 3 2 8 8 H 1.48500 * 109.47107 * 0.02562 * 7 5 3 9 9 H 1.48495 * 109.47175 * 119.99753 * 7 5 3 10 10 H 1.48499 * 109.47392 * 240.00157 * 7 5 3 11 11 C 1.46504 * 120.00148 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.88902 * 183.87948 * 11 2 1 13 13 C 1.55396 * 111.06920 * 307.66280 * 11 2 1 14 14 C 1.54328 * 102.82943 * 153.48623 * 13 11 2 15 15 N 1.47023 * 107.39941 * 337.97877 * 14 13 11 16 16 C 1.34771 * 125.64688 * 178.89919 * 15 14 13 17 17 O 1.21278 * 120.00514 * 179.97438 * 16 15 14 18 18 C 1.50704 * 119.99920 * 359.97165 * 16 15 14 19 19 N 1.46504 * 109.47054 * 179.97438 * 18 16 15 20 20 C 1.34777 * 119.99833 * 179.97438 * 19 18 16 21 21 O 1.21691 * 120.00147 * 0.02562 * 20 19 18 22 22 C 1.46657 * 119.99949 * 180.02562 * 20 19 18 23 23 C 1.36544 * 125.99229 * 180.02562 * 22 20 19 24 24 C 1.40366 * 106.71055 * 179.97438 * 23 22 20 25 25 C 1.35130 * 107.11293 * 0.02562 * 24 23 22 26 26 O 1.33932 * 108.76940 * 359.75206 * 25 24 23 27 27 C 1.47423 * 108.70267 * 358.86299 * 15 14 13 28 28 H 1.08991 * 109.47365 * 275.15812 * 1 2 3 29 29 H 1.08999 * 109.46940 * 35.15844 * 1 2 3 30 30 H 1.09003 * 109.47061 * 155.15453 * 1 2 3 31 31 H 0.97000 * 119.99633 * 180.02562 * 6 5 3 32 32 H 1.09007 * 110.69831 * 35.19651 * 13 11 2 33 33 H 1.09001 * 110.85508 * 271.84821 * 13 11 2 34 34 H 1.09003 * 109.88241 * 218.48277 * 14 13 11 35 35 H 1.08999 * 109.88060 * 97.46928 * 14 13 11 36 36 H 1.08993 * 109.47080 * 300.00134 * 18 16 15 37 37 H 1.09007 * 109.47108 * 60.00402 * 18 16 15 38 38 H 0.96997 * 120.00064 * 0.02562 * 19 18 16 39 39 H 1.07999 * 126.63959 * 359.96225 * 23 22 20 40 40 H 1.07995 * 126.43726 * 180.02562 * 24 23 22 41 41 H 1.08000 * 125.61387 * 180.02562 * 25 24 23 42 42 H 1.08999 * 110.36556 * 142.97107 * 27 15 14 43 43 H 1.09009 * 110.36203 * 265.17666 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1638 1.2240 -0.3693 5 6 1.5402 2.3392 0.4748 6 7 0.4248 2.2562 1.1686 7 14 2.3031 4.0088 0.1290 8 1 3.5448 3.8307 -0.6657 9 1 1.3419 4.8433 -0.6358 10 1 2.6287 4.6799 1.4131 11 6 2.1975 -1.2687 -0.0006 12 1 3.2717 -1.0973 0.0684 13 6 1.7095 -2.1961 1.1469 14 6 2.0258 -3.6063 0.6058 15 7 2.1185 -3.5050 -0.8580 16 6 2.4022 -4.5191 -1.6991 17 8 2.4524 -4.3197 -2.8943 18 6 2.6571 -5.9009 -1.1545 19 7 2.9399 -6.8177 -2.2616 20 6 3.2003 -8.1163 -2.0116 21 8 3.2000 -8.5273 -0.8662 22 6 3.4839 -9.0339 -3.1198 23 6 3.7617 -10.3661 -3.0075 24 6 3.9659 -10.8470 -4.3103 25 6 3.8065 -9.8004 -5.1501 26 8 3.5111 -8.7108 -4.4295 27 6 1.8490 -2.1106 -1.2533 28 1 -0.3633 0.0924 1.0234 29 1 -0.3633 0.8402 -0.5918 30 1 -0.3633 -0.9326 -0.4318 31 1 -0.0012 3.0622 1.5001 32 1 0.6383 -2.0767 1.3096 33 1 2.2640 -2.0020 2.0651 34 1 1.2276 -4.2962 0.8799 35 1 2.9741 -3.9559 1.0140 36 1 3.5114 -5.8730 -0.4781 37 1 1.7762 -6.2464 -0.6132 38 1 2.9405 -6.4901 -3.1746 39 1 3.8143 -10.9387 -2.0934 40 1 4.2055 -11.8625 -4.5890 41 1 3.8974 -9.8375 -6.2256 42 1 2.4843 -1.8244 -2.0915 43 1 0.7981 -1.9870 -1.5152 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001193857314.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:29 Heat of formation + Delta-G solvation = -39.705348 kcal Electronic energy + Delta-G solvation = -26262.606785 eV Core-core repulsion = 22309.968917 eV Total energy + Delta-G solvation = -3952.637868 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.65310 -41.43903 -40.39402 -38.97221 -36.61031 -35.77348 -34.03493 -33.54653 -31.67676 -31.17487 -29.92233 -28.35739 -28.02925 -25.30044 -24.10995 -23.63434 -22.69706 -21.47548 -21.01518 -20.63664 -19.62461 -18.96161 -18.05290 -17.70924 -17.44291 -17.29238 -17.12865 -16.74095 -16.21160 -15.94396 -15.55285 -15.08166 -14.95717 -14.81533 -14.38489 -14.29142 -14.12136 -13.93697 -13.88350 -13.58301 -13.54987 -13.38914 -12.95459 -12.85012 -12.51272 -12.40354 -12.15432 -12.07958 -11.84773 -11.64628 -11.44632 -11.17090 -11.05145 -10.66555 -10.48948 -9.76142 -9.67315 -8.79899 -7.85080 -5.34259 -0.00927 1.38156 1.42225 1.42607 1.46008 1.48820 1.58027 1.84576 2.03134 2.24631 2.50473 3.22652 3.31861 3.53000 3.68357 3.90822 3.96066 4.00774 4.10797 4.15590 4.24991 4.28002 4.34915 4.43014 4.61739 4.68756 4.77811 4.89029 4.90389 4.94380 4.97852 5.00279 5.12835 5.22590 5.29999 5.39684 5.42162 5.64299 5.71125 5.81122 6.26166 6.30786 6.40303 6.82464 6.90633 7.12792 7.83056 8.26598 9.17700 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.034975 B = 0.002091 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.377218 B =13386.180853 C =13812.437091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.601 5.601 3 C -0.266 4.266 4 H 0.071 0.929 5 C -0.048 4.048 6 N -0.933 5.933 7 Si 0.966 3.034 8 H -0.268 1.268 9 H -0.293 1.293 10 H -0.291 1.291 11 C 0.165 3.835 12 H 0.075 0.925 13 C -0.141 4.141 14 C 0.102 3.898 15 N -0.605 5.605 16 C 0.522 3.478 17 O -0.579 6.579 18 C 0.112 3.888 19 N -0.707 5.707 20 C 0.607 3.393 21 O -0.551 6.551 22 C -0.115 4.115 23 C -0.118 4.118 24 C -0.233 4.233 25 C 0.009 3.991 26 O -0.176 6.176 27 C 0.098 3.902 28 H 0.013 0.987 29 H 0.011 0.989 30 H 0.030 0.970 31 H 0.249 0.751 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.416 0.584 39 H 0.165 0.835 40 H 0.186 0.814 41 H 0.252 0.748 42 H 0.057 0.943 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.892 -25.769 -7.974 27.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.322 5.322 3 C -0.396 4.396 4 H 0.088 0.912 5 C -0.244 4.244 6 N -0.579 5.579 7 Si 0.795 3.205 8 H -0.192 1.192 9 H -0.220 1.220 10 H -0.218 1.218 11 C 0.056 3.944 12 H 0.093 0.907 13 C -0.181 4.181 14 C -0.020 4.020 15 N -0.338 5.338 16 C 0.311 3.689 17 O -0.460 6.460 18 C -0.015 4.015 19 N -0.360 5.360 20 C 0.395 3.605 21 O -0.431 6.431 22 C -0.167 4.167 23 C -0.139 4.139 24 C -0.252 4.252 25 C -0.060 4.060 26 O -0.072 6.072 27 C -0.027 4.027 28 H 0.031 0.969 29 H 0.030 0.970 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.113 0.887 35 H 0.116 0.884 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.255 0.745 39 H 0.182 0.818 40 H 0.203 0.797 41 H 0.268 0.732 42 H 0.076 0.924 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.760 -25.510 -7.843 27.303 hybrid contribution 0.006 1.442 -0.409 1.499 sum 5.766 -24.068 -8.252 26.089 Atomic orbital electron populations 1.20513 0.82635 0.95701 0.97979 1.43971 1.02039 1.00886 1.85342 1.19543 0.98755 0.86591 1.34738 0.91162 1.25742 0.98680 1.01721 0.98268 1.70214 1.21330 1.27665 1.38702 0.85218 0.77941 0.80200 0.77147 1.19243 1.21998 1.21767 1.21594 0.95937 0.84873 0.92025 0.90679 1.23100 1.02204 0.93419 0.99404 1.22315 1.03845 0.98179 0.77625 1.48392 1.67957 1.08591 1.08882 1.20440 0.76353 0.86458 0.85654 1.90687 1.54354 1.84326 1.16638 1.21152 1.05497 0.85000 0.89827 1.45635 1.70638 1.07973 1.11788 1.16630 0.76472 0.80905 0.86465 1.90864 1.54236 1.77185 1.20825 1.21782 1.16613 0.95988 0.82287 1.22289 0.98482 0.92359 1.00724 1.22247 1.09103 1.02549 0.91265 1.25412 0.98276 0.82675 0.99684 1.84101 1.68509 1.37920 1.16679 1.22679 1.00299 0.80373 0.99353 0.96858 0.97007 0.95128 0.94179 0.91458 0.89613 0.88690 0.88390 0.86179 0.86234 0.74531 0.81775 0.79697 0.73187 0.92433 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.35 7.58 127.77 0.97 9.32 16 2 N -0.60 -28.63 2.96 -694.58 -2.05 -30.68 16 3 C -0.27 -14.17 9.60 84.03 0.81 -13.36 16 4 H 0.07 3.66 7.87 -2.91 -0.02 3.63 16 5 C -0.05 -2.65 5.08 84.86 0.43 -2.22 16 6 N -0.93 -53.72 10.77 21.65 0.23 -53.48 16 7 Si 0.97 44.36 29.58 68.60 2.03 46.39 16 8 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 9 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 10 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 11 C 0.16 6.14 3.53 46.47 0.16 6.30 16 12 H 0.08 2.84 7.96 -2.39 -0.02 2.83 16 13 C -0.14 -4.16 6.53 31.87 0.21 -3.95 16 14 C 0.10 2.19 6.48 86.73 0.56 2.75 16 15 N -0.61 -16.58 3.33 -811.79 -2.70 -19.28 16 16 C 0.52 14.20 7.92 87.66 0.69 14.90 16 17 O -0.58 -19.94 15.92 -3.02 -0.05 -19.98 16 18 C 0.11 2.30 5.35 85.63 0.46 2.76 16 19 N -0.71 -15.93 5.52 -470.83 -2.60 -18.53 16 20 C 0.61 14.49 7.79 86.44 0.67 15.16 16 21 O -0.55 -15.44 16.86 -4.32 -0.07 -15.52 16 22 C -0.12 -2.38 7.13 24.07 0.17 -2.21 16 23 C -0.12 -1.99 10.62 22.39 0.24 -1.75 16 24 C -0.23 -2.52 10.88 22.07 0.24 -2.28 16 25 C 0.01 0.09 12.08 67.10 0.81 0.90 16 26 O -0.18 -3.15 10.40 -5.09 -0.05 -3.20 16 27 C 0.10 3.38 6.47 86.85 0.56 3.94 16 28 H 0.01 0.68 7.33 -2.39 -0.02 0.66 16 29 H 0.01 0.59 7.38 -2.39 -0.02 0.57 16 30 H 0.03 1.24 6.39 -2.39 -0.02 1.22 16 31 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 32 H 0.07 2.15 7.01 -2.38 -0.02 2.13 16 33 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 37 H 0.12 2.11 8.14 -2.38 -0.02 2.09 16 38 H 0.42 9.73 7.19 -92.71 -0.67 9.06 16 39 H 0.16 2.52 8.06 -2.91 -0.02 2.49 16 40 H 0.19 0.85 8.06 -2.91 -0.02 0.82 16 41 H 0.25 0.11 8.06 -2.91 -0.02 0.08 16 42 H 0.06 2.16 8.04 -2.39 -0.02 2.14 16 43 H 0.06 2.17 6.43 -2.38 -0.02 2.15 16 Total: -1.00 -71.85 362.47 2.09 -69.76 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: 0.37 Total: 14.25 kcal Atomic # 6 Polarization: 23.28 SS G_CDS: 6.99 Total: 30.27 kcal Atomic # 7 Polarization: -114.85 SS G_CDS: -7.12 Total: -121.97 kcal Atomic # 8 Polarization: -38.53 SS G_CDS: -0.17 Total: -38.70 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -71.85 2.09 -69.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001193857314.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.052 kcal (2) G-P(sol) polarization free energy of solvation -71.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds