Wall clock time and date at job start Tue Mar 31 2020 13:16:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42895 * 109.47036 * 2 1 4 4 P 1.61004 * 122.99671 * 180.02562 * 3 2 1 5 5 O 1.47991 * 109.47130 * 305.00061 * 4 3 2 6 6 C 1.82308 * 109.46661 * 185.00209 * 4 3 2 7 7 C 1.52996 * 109.46870 * 65.00506 * 6 4 3 8 8 O 1.42905 * 109.47093 * 179.97438 * 7 6 4 9 9 C 1.42896 * 114.00172 * 179.97438 * 8 7 6 10 10 H 1.08994 * 110.64626 * 333.14208 * 9 8 7 11 11 C 1.55159 * 110.71921 * 209.99762 * 9 8 7 12 12 C 1.54909 * 101.58258 * 206.13645 * 11 9 8 13 13 N 1.47424 * 104.82994 * 37.01247 * 12 11 9 14 14 C 1.36945 * 125.64982 * 155.83442 * 13 12 11 15 15 H 1.07996 * 120.00086 * 180.02562 * 14 13 12 16 16 C 1.38811 * 119.99684 * 0.02562 * 14 13 12 17 17 N 1.31614 * 120.00319 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99844 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47339 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47055 * 120.00170 * 18 16 14 21 21 H 1.48500 * 109.47706 * 239.99853 * 18 16 14 22 22 C 1.47016 * 108.70582 * 335.87160 * 13 12 11 23 23 O 1.60999 * 109.47171 * 65.00493 * 4 3 2 24 24 C 1.42901 * 122.99677 * 294.99794 * 23 4 3 25 25 C 1.52994 * 109.46817 * 179.97438 * 24 23 4 26 26 H 1.09001 * 109.47002 * 299.99477 * 1 2 3 27 27 H 1.08993 * 109.46955 * 59.99914 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46801 * 120.00369 * 2 1 3 30 30 H 1.09001 * 109.46998 * 239.99965 * 2 1 3 31 31 H 1.09007 * 109.46773 * 185.00062 * 6 4 3 32 32 H 1.08994 * 109.47358 * 305.00221 * 6 4 3 33 33 H 1.09005 * 109.47007 * 299.98844 * 7 6 4 34 34 H 1.08998 * 109.47797 * 59.99930 * 7 6 4 35 35 H 1.09000 * 111.00728 * 324.21276 * 11 9 8 36 36 H 1.08998 * 111.00388 * 88.06553 * 11 9 8 37 37 H 1.08999 * 110.37199 * 155.84844 * 12 11 9 38 38 H 1.08997 * 110.37240 * 278.17587 * 12 11 9 39 39 H 0.97003 * 120.00616 * 179.97438 * 17 16 14 40 40 H 1.09003 * 109.88302 * 241.64358 * 22 13 12 41 41 H 1.08997 * 109.88406 * 120.47735 * 22 13 12 42 42 H 1.08992 * 109.47147 * 299.99734 * 24 23 4 43 43 H 1.08995 * 109.47075 * 59.99922 * 24 23 4 44 44 H 1.09000 * 109.47463 * 179.97438 * 25 24 23 45 45 H 1.09003 * 109.47578 * 299.99882 * 25 24 23 46 46 H 1.09008 * 109.47510 * 59.99860 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 15 3.5717 1.7238 -0.0006 5 8 4.2390 1.0609 1.1419 6 6 3.7620 3.5307 0.1495 7 6 3.2364 3.9874 1.5118 8 8 3.3861 5.4037 1.6297 9 6 2.9224 5.9357 2.8722 10 1 2.1428 5.3020 3.2946 11 6 2.4099 7.3889 2.6901 12 6 2.6181 7.9724 4.1099 13 7 3.8742 7.3657 4.5867 14 6 4.7015 7.8911 5.5433 15 1 5.6034 7.3675 5.8239 16 6 4.3808 9.0966 6.1521 17 7 3.2814 9.7344 5.8106 18 14 5.5089 9.8129 7.4574 19 1 6.6698 8.9090 7.6586 20 1 5.9911 11.1466 7.0171 21 1 4.7630 9.9529 8.7338 22 6 4.0922 6.1038 3.8647 23 8 4.2430 1.2260 -1.3767 24 6 4.3502 -0.1530 -1.7360 25 6 5.0347 -0.2730 -3.0990 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 4.8161 3.7937 0.0599 32 1 3.1963 4.0226 -0.6418 33 1 2.1823 3.7245 1.6013 34 1 3.8021 3.4956 2.3031 35 1 3.0100 7.9256 1.9553 36 1 1.3555 7.3996 2.4140 37 1 2.7142 9.0571 4.0640 38 1 1.7901 7.6913 4.7607 39 1 3.0570 10.5767 6.2363 40 1 4.1039 5.2713 4.5683 41 1 5.0362 6.1458 3.3214 42 1 4.9398 -0.6792 -0.9854 43 1 3.3545 -0.5929 -1.7898 44 1 5.1170 -1.3248 -3.3730 45 1 4.4447 0.2531 -3.8495 46 1 6.0305 0.1671 -3.0457 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224726180.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:46 Heat of formation + Delta-G solvation = -207.289302 kcal Electronic energy + Delta-G solvation = -25212.577491 eV Core-core repulsion = 21409.065814 eV Total energy + Delta-G solvation = -3803.511676 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 321.158 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.42834 -38.15016 -37.33252 -36.01873 -33.29627 -32.37131 -31.77794 -31.42959 -30.82705 -29.05564 -26.96960 -24.43448 -24.05156 -23.33047 -22.92530 -20.25328 -20.11330 -19.54044 -18.08314 -17.00349 -16.75576 -16.52234 -15.77760 -15.75200 -15.49803 -14.79873 -14.66766 -14.63314 -14.32685 -13.90290 -13.31626 -13.25713 -13.06409 -12.81587 -12.70513 -12.64729 -12.47784 -12.35229 -11.97245 -11.86781 -11.67311 -11.65067 -11.28313 -11.03424 -11.03170 -10.90650 -10.76326 -10.73778 -10.51406 -10.32768 -10.20181 -10.05913 -9.75398 -9.52288 -9.12966 -8.63264 -6.81190 -5.62832 -3.04550 0.83761 3.09125 3.42694 3.47864 3.50941 3.90460 4.12994 4.40943 4.52440 4.53019 4.54842 4.58905 4.61205 4.73733 4.76279 4.91107 5.13112 5.20273 5.25926 5.37087 5.39709 5.42587 5.45734 5.50277 5.52243 5.59753 5.70193 5.71311 5.76608 5.80743 5.88754 6.33100 6.55814 6.58659 6.66041 6.75903 6.85519 7.24808 7.50202 7.60177 7.66108 7.86410 8.37442 9.24385 9.84875 10.49558 11.41656 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.024070 B = 0.002346 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.017228 B =11934.845669 C =12410.414982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.102 3.898 3 O -0.746 6.746 4 P 2.389 2.611 5 O -1.018 7.018 6 C -0.720 4.720 7 C 0.077 3.923 8 O -0.376 6.376 9 C 0.072 3.928 10 H 0.066 0.934 11 C -0.140 4.140 12 C 0.153 3.847 13 N -0.602 5.602 14 C -0.219 4.219 15 H 0.079 0.921 16 C -0.014 4.014 17 N -0.925 5.925 18 Si 0.917 3.083 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.290 1.290 22 C 0.117 3.883 23 O -0.748 6.748 24 C 0.102 3.898 25 C -0.160 4.160 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.123 0.877 32 H 0.104 0.896 33 H 0.054 0.946 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.111 0.889 38 H 0.015 0.985 39 H 0.252 0.748 40 H 0.025 0.975 41 H 0.034 0.966 42 H 0.078 0.922 43 H 0.058 0.942 44 H 0.077 0.923 45 H 0.065 0.935 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.059 -24.388 -19.594 31.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.029 3.971 3 O -0.767 6.767 4 P 2.595 2.405 5 O -1.118 7.118 6 C -0.746 4.746 7 C 0.000 4.000 8 O -0.296 6.296 9 C 0.014 3.986 10 H 0.084 0.916 11 C -0.178 4.178 12 C 0.028 3.972 13 N -0.330 5.330 14 C -0.348 4.348 15 H 0.097 0.903 16 C -0.209 4.209 17 N -0.574 5.574 18 Si 0.748 3.252 19 H -0.205 1.205 20 H -0.217 1.217 21 H -0.217 1.217 22 C -0.010 4.010 23 O -0.769 6.769 24 C 0.029 3.971 25 C -0.217 4.217 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.141 0.859 32 H 0.123 0.877 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.129 0.871 38 H 0.033 0.967 39 H 0.062 0.938 40 H 0.043 0.957 41 H 0.052 0.948 42 H 0.096 0.904 43 H 0.076 0.924 44 H 0.096 0.904 45 H 0.084 0.916 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.969 -23.050 -19.713 30.734 hybrid contribution 0.439 1.037 0.632 1.291 sum -4.529 -22.013 -19.082 29.482 Atomic orbital electron populations 1.21911 0.93151 1.02684 1.03933 1.22426 0.97021 0.76276 1.01331 1.88056 1.55707 1.37777 1.95199 0.89849 0.48122 0.51755 0.50815 1.95139 1.78624 1.79347 1.58708 1.31334 1.10185 1.28449 1.04591 1.21962 0.99315 0.84747 0.93963 1.87941 1.84745 1.19257 1.37617 1.23330 0.95850 0.95684 0.83711 0.91583 1.23187 0.99378 0.93520 1.01740 1.21964 0.87043 1.01362 0.86830 1.44409 1.24172 1.19936 1.44438 1.19168 1.01719 1.02484 1.11389 0.90300 1.24809 0.97941 0.97682 1.00464 1.69787 1.24931 1.17452 1.45196 0.85948 0.79569 0.78793 0.80910 1.20470 1.21743 1.21722 1.21695 0.96035 0.90235 0.93015 1.88032 1.87007 1.35383 1.66477 1.22429 1.00480 0.75189 0.98975 1.21912 1.02017 1.02449 0.95285 0.90994 0.91587 0.90488 0.90409 0.92502 0.85893 0.87707 0.92832 0.91140 0.91243 0.92007 0.87092 0.96719 0.93755 0.95736 0.94830 0.90406 0.92381 0.90439 0.91570 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.81 10.28 37.16 0.38 -0.43 16 2 C 0.10 0.64 6.99 37.16 0.26 0.90 16 3 O -0.75 -6.81 10.19 -11.30 -0.12 -6.92 16 4 P 2.39 26.06 5.36 -42.89 -0.23 25.83 16 5 O -1.02 -15.12 18.54 -9.09 -0.17 -15.29 16 6 C -0.72 -9.84 6.71 37.16 0.25 -9.59 16 7 C 0.08 1.27 5.77 37.16 0.21 1.49 16 8 O -0.38 -7.54 10.07 -35.23 -0.35 -7.89 16 9 C 0.07 1.50 3.45 -24.89 -0.09 1.42 16 10 H 0.07 1.26 7.82 -51.93 -0.41 0.86 16 11 C -0.14 -3.01 6.81 -24.58 -0.17 -3.18 16 12 C 0.15 3.97 5.89 -2.53 -0.01 3.96 16 13 N -0.60 -16.78 3.39 -170.08 -0.58 -17.35 16 14 C -0.22 -6.48 10.27 -15.06 -0.15 -6.64 16 15 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 16 C -0.01 -0.41 5.49 -17.43 -0.10 -0.50 16 17 N -0.92 -27.90 10.09 55.49 0.56 -27.34 16 18 Si 0.92 22.89 29.55 -169.99 -5.02 17.87 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 22 C 0.12 2.80 7.02 -3.06 -0.02 2.78 16 23 O -0.75 -6.54 10.19 -11.30 -0.12 -6.66 16 24 C 0.10 0.60 6.99 37.15 0.26 0.86 16 25 C -0.16 -0.72 10.28 37.15 0.38 -0.34 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.19 5.60 -51.93 -0.29 -0.10 16 31 H 0.12 1.73 8.14 -51.92 -0.42 1.31 16 32 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.05 0.77 8.11 -51.93 -0.42 0.35 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 37 H 0.11 3.18 5.87 -51.93 -0.30 2.87 16 38 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 39 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 40 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.03 0.83 8.06 -51.93 -0.42 0.41 16 42 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 0.18 5.60 -51.93 -0.29 -0.11 16 44 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 45 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 46 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 LS Contribution 383.99 15.07 5.79 5.79 Total: -1.00 -36.93 383.99 -7.05 -43.98 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -8.02 Total: -2.74 kcal Atomic # 6 Polarization: -10.48 SS G_CDS: 1.21 Total: -9.27 kcal Atomic # 7 Polarization: -44.68 SS G_CDS: -0.02 Total: -44.70 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -0.75 Total: -36.76 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Atomic # 15 Polarization: 26.06 SS G_CDS: -0.23 Total: 25.83 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -36.93 -7.05 -43.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224726180.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.307 kcal (2) G-P(sol) polarization free energy of solvation -36.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds